Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dipodomys_20ordii_20[refseq_20GCF_5F000151885.1_202014-12-12] 65,193 sequences; 2,236,368,823 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq25 168 6e-37 seq102 138 1e-27 >seq25 Length=23434732 Score = 168 bits (186), Expect = 6e-37 Identities = 134/161 (83%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 34565 GATCTCCCTCTGATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTCGCGAAT 34624 ||||| |||||||||||||| || || ||||| |||||||||| ||||| || | |||| Sbjct 21720543 GATCTTCCTCTGATGGCGCTGCCTCCCTGCCATGCCCTCTGCCAGTTCTATGTGGTGAAT 21720602 Query 34625 GGGGAGCTGTCCTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTC 34684 |||||||||||||||||||| || || | || ||||||||||| | || ||||| ||| Sbjct 21720603 GGGGAGCTGTCCTGCCAGCTGTACCAGAGGTCTGGAGACATGGGCCTGGGTGTGCCCTTC 21720662 Query 34685 AACATTGCTAGTTACGCTCTGCTCACGTACATGATCGCTCA 34725 |||||||| || ||||| |||||||| |||||||| || || Sbjct 21720663 AACATTGCCAGCTACGCCCTGCTCACCTACATGATTGCACA 21720703 Score = 168 bits (186), Expect = 6e-37 Identities = 134/161 (83%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 6620 TGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAACCCC 6679 || || |||||||| |||||||| ||||| || ||||||||||| ||||| || | ||| Sbjct 21720703 TGTGCAATCATGTAGGTGAGCAGGGCGTAGCTGGCAATGTTGAAGGGCACACCCAGGCCC 21720644 Query 6680 ATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGCGACGTAGAATTGG 6739 |||||||| || | || || |||||||||||||||||||||||| | || ||||| ||| Sbjct 21720643 ATGTCTCCAGACCTCTGGTACAGCTGGCAGGACAGCTCCCCATTCACCACATAGAACTGG 21720584 Query 6740 CAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATC 6780 ||||||| ||||| || || |||||||||||||| ||||| Sbjct 21720583 CAGAGGGCATGGCAGGGAGGCAGCGCCATCAGAGGAAGATC 21720543 Score = 89.7 bits (98), Expect = 5e-13 Identities = 112/154 (73%), Gaps = 0/154 (0%) Strand=Plus/Plus Query 34293 CCACGAACACCAAGGAGCTCTCGTCCCGGGGGGTGAAGATCTGGGACGCTCACGGGTCTC 34352 |||| ||| |||| || || || ||| ||| ||||| |||||||| || | || || | Sbjct 21715860 CCACAAACGCCAAAGAACTGTCTTCCAAGGGAGTGAAAATCTGGGATGCCAATGGATCCC 21715919 Query 34353 GAGACTTTCTGGACAAGCGGGGGTTCCCATCTCGGGAGGAGGGCGACTTGGGCCCGGTCT 34412 |||| ||| |||||| | ||| || | | || | || || ||| ||||||| || | Sbjct 21715920 GAGATTTTTTGGACAGCCTGGGATTTTCTGCCCGAAAAGAAGGGGACCTGGGCCCAGTTT 21715979 Query 34413 ACGGGTTCCAGTGGAGACACTTTGGGGCGGAGTA 34446 | || ||||||||||| || ||||| || || || Sbjct 21715980 ATGGCTTCCAGTGGAGGCATTTTGGAGCAGACTA 21716013 Score = 89.7 bits (98), Expect = 5e-13 Identities = 112/154 (73%), Gaps = 0/154 (0%) Strand=Plus/Minus Query 6899 TACTCCGCCCCAAAGTGTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCC 6958 || || || ||||| || ||||||||||| || || || ||||||| ||| || || | Sbjct 21716013 TAGTCTGCTCCAAAATGCCTCCACTGGAAGCCATAAACTGGGCCCAGGTCCCCTTCTTTT 21715954 Query 6959 CGAGATGGGAACCCCCGCTTGTCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTTC 7018 || | | || ||| | |||||| ||| ||||| || || | || |||||||| ||| Sbjct 21715953 CGGGCAGAAAATCCCAGGCTGTCCAAAAAATCTCGGGATCCATTGGCATCCCAGATTTTC 21715894 Query 7019 ACCCCCCGGGACGAGAGCTCCTTGGTGTTCGTGG 7052 || ||| ||| || || || |||| ||| |||| Sbjct 21715893 ACTCCCTTGGAAGACAGTTCTTTGGCGTTTGTGG 21715860 >seq102 Length=6955989 Score = 138 bits (152), Expect = 1e-27 Identities = 232/334 (69%), Gaps = 5/334 (1%) Strand=Plus/Plus Query 6546 GCTCGATGTGGTTCAGGTAGATATGCGCATCCCCCAACGTATGCACCAGCTCCCCAGGAA 6605 |||| ||||| |||||||| |||| ||| | ||| | || || || | ||||| || Sbjct 2434941 GCTCAATGTGATTCAGGTAAGTATGTGCAACTCCCGAAGTGTGTACAAAGTCCCCTGGCT 2435000 Query 6606 CCAACCCCACGACATGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACG 6665 ||| |||| || || || |||||||| |||| ||| || | ||| ||| ||||||| | Sbjct 2435001 GCAAGCCCAGGATGTGTGCAATCATGTAGGTGACCAGGGCATCACTGGCAGTGTTGAAGG 2435060 Query 6666 GCACCCCTAACCCCATGTCTCCCG----ATCGTTGATAGAGCTGGCAGGACAGCTCCCCA 6721 || || | ||| || ||||| ||| | | || || || |||||||| |||| Sbjct 2435061 ACATGCCCAGGCCCGTGCCTCCCACCCAATCTTCGGTACAGTTGTCAGGACAGACCCCCT 2435120 Query 6722 TTCGCGACGTAGAATTGGCAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATCC 6781 | | || | ||| ||||||||| ||| | || ||| | ||||||| ||||| Sbjct 2435121 TCTACCACATGGAACTGGCAGAGGACATGGTGGGAAGGCAGCATCCTCAGAGGAAGATCT 2435180 Query 6782 TTCGGGTTCCACGCGCACATCACGATCCTTCTGTCATCAGGGTTCCGCTTCA-AGGTGTC 6840 || || ||||| |||||||| | | || | |||||||||||| || | || | Sbjct 2435181 TTTGGATTCCAGGCGCACATGATGTTCTGTTGGTCATCAGGGTTGGTTTTGATGGGATTT 2435240 Query 6841 GATCACGTACTGCAGCTGGTCCGCTCCCTGTCCC 6874 |||||| | ||||||||||| |||| || ||| Sbjct 2435241 GATCACTTTTTGCAGCTGGTCTACTCCTTGACCC 2435274 Score = 138 bits (152), Expect = 1e-27 Identities = 232/334 (69%), Gaps = 5/334 (1%) Strand=Plus/Minus Query 34471 GGGACAGGGAGCGGACCAGCTGCAGTACGTGATCGACACCT-TGAAGCGGAACCCTGATG 34529 ||| || |||| ||||||||||| | |||||| | || | || |||||||||| Sbjct 2435274 GGGTCAAGGAGTAGACCAGCTGCAAAAAGTGATCAAATCCCATCAAAACCAACCCTGATG 2435215 Query 34530 ACAGAAGGATCGTGATGTGCGCGTGGAACCCGAAGGATCTCCCTCTGATGGCGCTCCCCC 34589 || | || | | |||||||| ||||| || || ||||| ||||||| | ||| || Sbjct 2435214 ACCAACAGAACATCATGTGCGCCTGGAATCCAAAAGATCTTCCTCTGAGGATGCTGCCTT 2435155 Query 34590 CGTGCCACACCCTCTGCCAATTCTACGTCGCGAATGGGGAGCTGTCCTGCCAGCTCTATC 34649 | ||| ||||||||| ||| | || | | |||| |||||||| || || || | Sbjct 2435154 CCCACCATGTCCTCTGCCAGTTCCATGTGGTAGAAGGGGGTCTGTCCTGACAACTGTACC 2435095 Query 34650 AACGAT----CGGGAGACATGGGGTTAGGGGTGCCGTTCAACATTGCTAGTTACGCTCTG 34705 | ||| ||||| || ||| | || || | ||||||| ||| ||| | || ||| Sbjct 2435094 GAAGATTGGGTGGGAGGCACGGGCCTGGGCATGTCCTTCAACACTGCCAGTGATGCCCTG 2435035 Query 34706 CTCACGTACATGATCGCTCATGTCGTGGGGTTGGTTCCTGGGGAGCTGGTGCATACGTTG 34765 |||| |||||||| || || || |||| ||| || ||||| | || || || | | Sbjct 2435034 GTCACCTACATGATTGCACACATCCTGGGCTTGCAGCCAGGGGACTTTGTACACACTTCG 2434975 Query 34766 GGGGATGCGCATATCTACCTGAACCACATCGAGC 34799 || | ||| |||| |||||||| ||||| |||| Sbjct 2434974 GGAGTTGCACATACTTACCTGAATCACATTGAGC 2434941 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 447897105366960