Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dipodomys_20ordii_20[refseq_20GCF_5F000151885.1_202014-12-12] 65,193 sequences; 2,236,368,823 total letters Query= NC_029255.1 Length=129563 Score E Sequences producing significant alignments: (Bits) Value seq111 172 5e-38 seq228 136 3e-27 seq25 105 6e-18 >seq111 Length=9602903 Score = 172 bits (190), Expect = 5e-38 Identities = 202/272 (74%), Gaps = 1/272 (0%) Strand=Plus/Plus Query 1255 TTAAG-TGTTTTTTAGAAACGCCACAAGAAGTTGTCATTGTAACATGGCAAAAAGTTAAA 1313 ||||| |||| | | ||||| | || |||| | |||| |||||||| ||| || Sbjct 6043939 TTAAGATGTTCTCTGCAAACGTCCCAGGAAGCCTTGCTTGTGACATGGCAGAAAAAGAAG 6043998 Query 1314 GCATCAAGCCCAGAAAACATGGCCACTTTTAGTAATGACCACGGGGTTGTTGTTCAGCCA 1373 || |||||||||||||||| ||||| ||| | || |||||||| || ||||| Sbjct 6043999 GCTGTAAGCCCAGAAAACATGATCACTTACAGTGAGAGCCGTGGGGTTGTGGTCCAGCCT 6044058 Query 1374 GCATACAAAGATAAAATGAACATAACTGAGCTTGGACTACAAAACACAACTATAACCTTC 1433 || || || |||| | | ||||| |||||||| ||||| | |||||| | || |||||| Sbjct 6044059 GCCTATAAGGATAGAGTCAACATCACTGAGCTGGGACTCCGGAACACAGCAATCACCTTC 6044118 Query 1434 TGGAACACAACATTGGATGATGAAGGGTGCTACAAGTGTTTATTTAACACTTTTGGATCT 1493 |||||||| || |||||||||| |||||||||| |||| | || |||| || || ||| Sbjct 6044119 TGGAACACGACTCTGGATGATGAGGGGTGCTACATGTGTCTTTTCAACATCTTCGGTTCT 6044178 Query 1494 GGGAAGATGTCAGGAATAGGGTGTCTAACCCT 1525 || ||| | ||||||| || || || || || Sbjct 6044179 GGAAAGGTCTCAGGAACAGCCTGCCTCACACT 6044210 >seq228 Length=2243194 Score = 136 bits (150), Expect = 3e-27 Identities = 331/499 (66%), Gaps = 7/499 (1%) Strand=Plus/Minus Query 2170 ATGGGCATTGGAAACAAGGGAAAACTGCCATGGCCTCCTCTTAAAAATGAATTTAAACAT 2229 |||||||| || || || || || || ||||| || || | | |||||| || || Sbjct 137599 ATGGGCATCGGCAAAAATGGCGCCCTCCCCTGGCCCCCGCTCAGGAGTGAATTCAAGTAT 137540 Query 2230 TTTCAAAAAATGACATCTTCTTCCACTGACTTA---AAACAGAATGTTGTAATTATGGGA 2286 || | || |||||| | | || || | | ||||||||| | || |||||||| Sbjct 137539 TTCCGAAGAATGACCACAACCTCTACAGTAGAAGGTAAACAGAATCTGGTGATTATGGGT 137480 Query 2287 AGAAAGACATGGTTTTCACTTCCCATTAAAAGCA--GGCCTTTGAACAACAGAATAAATC 2344 || || || ||||| || |||| | | ||| | | ||||| || ||||||| ||| Sbjct 137479 AGGAAAACCTGGTTCTCCATTCC--TGAGAAGAATCGACCTTTAAAGGACAGAATTAATA 137422 Query 2345 TGGTTCTCAGTAGACACCTTAAAGAGCCACCACGTGGGGCTCACTTTGTTGCAAAAAGTA 2404 | ||||| |||||| | || || || || |||| || ||||| ||| | || |||||| Sbjct 137421 TAGTTCTTAGTAGAGAACTCAAGGAACCCCCACAAGGAGCTCATTTTCTGGCCAAAAGTT 137362 Query 2405 TAGATCACGCTCTGGAAATTATAATAGGACCAGAATTAAAAGACAGGGTGGATAAGATTT 2464 ||||| | || | || |||| |||||||||||| | | || || | | ||| Sbjct 137361 TAGATGAAGCCTTAAAACTTATTGAGCAACCAGAATTAAACAATAAAGTAGACATGGTTT 137302 Query 2465 GGATAATTGGTGGAAGATCTGTCTATGAGGAGAGCATTACAAGATCTTGCAAACAGATGC 2524 ||||| | || || | ||| ||| |||| ||| | | || | | | | Sbjct 137301 GGATAGCAAGAGGCAGTTTTGTTTATAAGGAAGCCATGAGTCAGCCAGGCCATCTTAAAC 137242 Query 2525 TGTTTTTAACAAGGATTCTGCAAAAATTTGAATGTGATACATACTTCCCAGAAATTAATC 2584 | ||| | ||| || | | || |||||||| |||| |||| |||||||| ||| || Sbjct 137241 TATTTGTGACACGGGTCATACAGGAATTTGAAAGTGACACATTTTTCCCAGATATTGATT 137182 Query 2585 TTACCAAATACAAACAACTTACTGAATTTCCAGGTGTTCCCTCTGCCGTGCAAGAAGAAA 2644 | ||||| |||| || | |||| |||||||| | ||| || || || |||| Sbjct 137181 TGGAAAAATATAAACTTCTCCCAGAATACCCAGGTGTGCTTTCTAAGGTCCAGGAGGAAA 137122 Query 2645 ATGGAATTAGATACAAATT 2663 | | |||| |||||||| Sbjct 137121 AGGCCATTAAGTACAAATT 137103 >seq25 Length=23434732 Score = 105 bits (116), Expect = 6e-18 Identities = 120/161 (75%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 118534 AGCCCTGTCAGGTGAGCAATCATGTATGTCAACAAACTGTAGCTGGCTACATTAAAAGGA 118593 || ||||| | ||| ||||||||||| || | || ||||||||| | || || || Sbjct 21720715 AGGCCTGTGATGTGTGCAATCATGTAGGTGAGCAGGGCGTAGCTGGCAATGTTGAAGGGC 21720656 Query 118594 ACACCCAGACCCATGTCTGCTGATCTCTGGTACAATTGGCAAGAGAGCTCCCCGTTTGCA 118653 |||||||| ||||||||| | || |||||||||| ||||| || |||||||| || | Sbjct 21720655 ACACCCAGGCCCATGTCTCCAGACCTCTGGTACAGCTGGCAGGACAGCTCCCCATTCACC 21720596 Query 118654 ACATAAAACTGACTTATGATGTGACATGGAGGCAGAACCAT 118694 ||||| ||||| | | | || || |||||||| |||| Sbjct 21720595 ACATAGAACTGGCAGAGGGCATGGCAGGGAGGCAGCGCCAT 21720555 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414147481732852