Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Dipodomys_20ordii_20[refseq_20GCF_5F000151885.1_202014-12-12]
65,193 sequences; 2,236,368,823 total letters
Query= NC_029255.1
Length=129563
Score E
Sequences producing significant alignments: (Bits) Value
seq111 172 5e-38
seq228 136 3e-27
seq25 105 6e-18
>seq111
Length=9602903
Score = 172 bits (190), Expect = 5e-38
Identities = 202/272 (74%), Gaps = 1/272 (0%)
Strand=Plus/Plus
Query 1255 TTAAG-TGTTTTTTAGAAACGCCACAAGAAGTTGTCATTGTAACATGGCAAAAAGTTAAA 1313
||||| |||| | | ||||| | || |||| | |||| |||||||| ||| ||
Sbjct 6043939 TTAAGATGTTCTCTGCAAACGTCCCAGGAAGCCTTGCTTGTGACATGGCAGAAAAAGAAG 6043998
Query 1314 GCATCAAGCCCAGAAAACATGGCCACTTTTAGTAATGACCACGGGGTTGTTGTTCAGCCA 1373
|| |||||||||||||||| ||||| ||| | || |||||||| || |||||
Sbjct 6043999 GCTGTAAGCCCAGAAAACATGATCACTTACAGTGAGAGCCGTGGGGTTGTGGTCCAGCCT 6044058
Query 1374 GCATACAAAGATAAAATGAACATAACTGAGCTTGGACTACAAAACACAACTATAACCTTC 1433
|| || || |||| | | ||||| |||||||| ||||| | |||||| | || ||||||
Sbjct 6044059 GCCTATAAGGATAGAGTCAACATCACTGAGCTGGGACTCCGGAACACAGCAATCACCTTC 6044118
Query 1434 TGGAACACAACATTGGATGATGAAGGGTGCTACAAGTGTTTATTTAACACTTTTGGATCT 1493
|||||||| || |||||||||| |||||||||| |||| | || |||| || || |||
Sbjct 6044119 TGGAACACGACTCTGGATGATGAGGGGTGCTACATGTGTCTTTTCAACATCTTCGGTTCT 6044178
Query 1494 GGGAAGATGTCAGGAATAGGGTGTCTAACCCT 1525
|| ||| | ||||||| || || || || ||
Sbjct 6044179 GGAAAGGTCTCAGGAACAGCCTGCCTCACACT 6044210
>seq228
Length=2243194
Score = 136 bits (150), Expect = 3e-27
Identities = 331/499 (66%), Gaps = 7/499 (1%)
Strand=Plus/Minus
Query 2170 ATGGGCATTGGAAACAAGGGAAAACTGCCATGGCCTCCTCTTAAAAATGAATTTAAACAT 2229
|||||||| || || || || || || ||||| || || | | |||||| || ||
Sbjct 137599 ATGGGCATCGGCAAAAATGGCGCCCTCCCCTGGCCCCCGCTCAGGAGTGAATTCAAGTAT 137540
Query 2230 TTTCAAAAAATGACATCTTCTTCCACTGACTTA---AAACAGAATGTTGTAATTATGGGA 2286
|| | || |||||| | | || || | | ||||||||| | || ||||||||
Sbjct 137539 TTCCGAAGAATGACCACAACCTCTACAGTAGAAGGTAAACAGAATCTGGTGATTATGGGT 137480
Query 2287 AGAAAGACATGGTTTTCACTTCCCATTAAAAGCA--GGCCTTTGAACAACAGAATAAATC 2344
|| || || ||||| || |||| | | ||| | | ||||| || ||||||| |||
Sbjct 137479 AGGAAAACCTGGTTCTCCATTCC--TGAGAAGAATCGACCTTTAAAGGACAGAATTAATA 137422
Query 2345 TGGTTCTCAGTAGACACCTTAAAGAGCCACCACGTGGGGCTCACTTTGTTGCAAAAAGTA 2404
| ||||| |||||| | || || || || |||| || ||||| ||| | || ||||||
Sbjct 137421 TAGTTCTTAGTAGAGAACTCAAGGAACCCCCACAAGGAGCTCATTTTCTGGCCAAAAGTT 137362
Query 2405 TAGATCACGCTCTGGAAATTATAATAGGACCAGAATTAAAAGACAGGGTGGATAAGATTT 2464
||||| | || | || |||| |||||||||||| | | || || | | |||
Sbjct 137361 TAGATGAAGCCTTAAAACTTATTGAGCAACCAGAATTAAACAATAAAGTAGACATGGTTT 137302
Query 2465 GGATAATTGGTGGAAGATCTGTCTATGAGGAGAGCATTACAAGATCTTGCAAACAGATGC 2524
||||| | || || | ||| ||| |||| ||| | | || | | | |
Sbjct 137301 GGATAGCAAGAGGCAGTTTTGTTTATAAGGAAGCCATGAGTCAGCCAGGCCATCTTAAAC 137242
Query 2525 TGTTTTTAACAAGGATTCTGCAAAAATTTGAATGTGATACATACTTCCCAGAAATTAATC 2584
| ||| | ||| || | | || |||||||| |||| |||| |||||||| ||| ||
Sbjct 137241 TATTTGTGACACGGGTCATACAGGAATTTGAAAGTGACACATTTTTCCCAGATATTGATT 137182
Query 2585 TTACCAAATACAAACAACTTACTGAATTTCCAGGTGTTCCCTCTGCCGTGCAAGAAGAAA 2644
| ||||| |||| || | |||| |||||||| | ||| || || || ||||
Sbjct 137181 TGGAAAAATATAAACTTCTCCCAGAATACCCAGGTGTGCTTTCTAAGGTCCAGGAGGAAA 137122
Query 2645 ATGGAATTAGATACAAATT 2663
| | |||| ||||||||
Sbjct 137121 AGGCCATTAAGTACAAATT 137103
>seq25
Length=23434732
Score = 105 bits (116), Expect = 6e-18
Identities = 120/161 (75%), Gaps = 0/161 (0%)
Strand=Plus/Minus
Query 118534 AGCCCTGTCAGGTGAGCAATCATGTATGTCAACAAACTGTAGCTGGCTACATTAAAAGGA 118593
|| ||||| | ||| ||||||||||| || | || ||||||||| | || || ||
Sbjct 21720715 AGGCCTGTGATGTGTGCAATCATGTAGGTGAGCAGGGCGTAGCTGGCAATGTTGAAGGGC 21720656
Query 118594 ACACCCAGACCCATGTCTGCTGATCTCTGGTACAATTGGCAAGAGAGCTCCCCGTTTGCA 118653
|||||||| ||||||||| | || |||||||||| ||||| || |||||||| || |
Sbjct 21720655 ACACCCAGGCCCATGTCTCCAGACCTCTGGTACAGCTGGCAGGACAGCTCCCCATTCACC 21720596
Query 118654 ACATAAAACTGACTTATGATGTGACATGGAGGCAGAACCAT 118694
||||| ||||| | | | || || |||||||| ||||
Sbjct 21720595 ACATAGAACTGGCAGAGGGCATGGCAGGGAGGCAGCGCCAT 21720555
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 414147481732852
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |