Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dipodomys_20ordii_20[refseq_20GCF_5F000151885.1_202014-12-12] 65,193 sequences; 2,236,368,823 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq66 170 4e-37 seq147 168 2e-36 seq91 156 1e-32 seq84 143 6e-29 seq36 136 9e-27 seq74 123 6e-23 seq1 123 6e-23 seq148 118 2e-21 seq61 100 7e-16 seq48 100 7e-16 seq2 96.9 8e-15 >seq66 Length=5789316 Score = 170 bits (188), Expect = 4e-37 Identities = 165/212 (78%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || ||||| ||||||||||| || |||||||| || || | ||||| | |||||| Sbjct 2649879 AGCACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTACGGCCATCT 2649820 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||||||||||||| || ||||| || | || |||||||| |||| |||||||||||| Sbjct 2649819 TCCAGCTGCTTGCCCGCAAAGATCAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTGTCC 2649760 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| || || || |||||||||||| | || ||||| || ||||| ||| Sbjct 2649759 TGGATCTTAGCCTTGACATTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTC 2649700 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || || ||||| || || | |||||| Sbjct 2649699 TTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 2649668 Score = 159 bits (176), Expect = 8e-34 Identities = 163/213 (77%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || ||||| ||||||||||| || |||||||| || || | ||||| | |||||| Sbjct 2649651 AGCACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTACGGCCATCT 2649592 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 ||||||||||||||||| ||||| | | || || ||||| || | || ||||||||| Sbjct 2649591 TCCAGCTGCTTGCCTGCAAAGATCAACCTCTGCTGATCAGGTGGTATGCCCTCCTTGTCC 2649532 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| || || || |||||||||||| | || ||||| | ||||| ||| Sbjct 2649531 TGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCCACCTCCAAGGTGATGGTC 2649472 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCATT 211115 || || || || ||||| ||||| | ||||||| Sbjct 2649471 TTGCCAGTCAGGGTCTTCACAAAGATCTGCATT 2649439 >seq147 Length=2532799 Score = 168 bits (186), Expect = 2e-36 Identities = 165/213 (77%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| ||||| || |||||||| || |||||||| || || | ||| || | |||||| Sbjct 2383932 AGGACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATCT 2383873 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 ||||||||||||||||||||||| || | || ||||||||||| | || || || ||| Sbjct 2383872 TCCAGCTGCTTGCCTGCGAAGATCAGCCTCTGCTGGTCAGGAGGGATGCCCTCTTTATCC 2383813 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| ||||| || || ||||| ||| | |||||||| |||||||| ||| Sbjct 2383812 TGGATCTTGGCCTTCACATTCTCAATGGTATCACTGGGCTCAACCTCTAGAGTGATGGTC 2383753 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCATT 211115 || || || | ||||| || || | ||||||| Sbjct 2383752 TTGCCAGTCAAGGTCTTCACGAAGATCTGCATT 2383720 Score = 152 bits (168), Expect = 1e-31 Identities = 161/212 (76%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || ||||| || ||||||||||| |||||||| || || | ||| || | |||||| Sbjct 2384160 AGAACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATCT 2384101 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 ||||||||||||||||||||||| || | || ||||| ||||| | || || || ||| Sbjct 2384100 TCCAGCTGCTTGCCTGCGAAGATCAGCCTCTGCTGGTCGGGAGGGATGCCCTCTTTATCC 2384041 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| ||||| || || ||||| ||| | || ||||| || || || ||| Sbjct 2384040 TGGATCTTGGCCTTCACATTCTCAATGGTATCACTGGGCTCCACCTCCAGGGTAATGGTC 2383981 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || || ||||| || || | |||||| Sbjct 2383980 TTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 2383949 >seq91 Length=4965619 Score = 156 bits (172), Expect = 1e-32 Identities = 167/221 (76%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 210894 CGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTC 210953 |||||||| | || || |||||||||||||| ||||||||||| || || | | || Sbjct 1585555 CGAAGTCTCAATACTAGATGAAGAGTGGACTCCTTTTGGATGTTGTAGTCAGATAAAGTT 1585614 Query 210954 CTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCT 211013 |||||||||||||||||| || || ||||| || | ||| || ||||| | | |||| Sbjct 1585615 TGTCCATCTTCCAGCTGCTTACCAGCAAAGATCAGTCTTTGCTGATCAGGTAGCATTCCT 1585674 Query 211014 TCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGA 211073 ||||| ||||||||||| || || ||||| || || || ||| |||||||| ||| Sbjct 1585675 TCCTTATCCTGGATCTTGGCCTTTACATTTTCCATAGTATCCGAGGGTTCAACCTTGAGT 1585734 Query 211074 GTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||| || || ||||| || || || | || | |||||| Sbjct 1585735 GTGATGGTTTTCCCCGTAAGGGTTTTAATGAAAATCTGCAT 1585775 >seq84 Length=7487594 Score = 143 bits (158), Expect = 6e-29 Identities = 154/204 (75%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 210896 AAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCT 210955 |||||| | || || |||||||||||||| ||||| ||||| |||| | | || | Sbjct 757426 AAGTCTCAATACTAGATGAAGAGTGGACTCCTTTTGAATGTTGCAATCAGATAAAGTACA 757485 Query 210956 TCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTC 211015 ||||||| |||||||||| || || ||| | || | ||| || |||||||||| |||||| Sbjct 757486 TCCATCTCCCAGCTGCTTACCAGCAAAGTTTAGTCTTTGCTGATCAGGAGGAATTCCTTC 757545 Query 211016 CTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGT 211075 ||| ||||||||||| || || ||||| || || || ||| |||||| | ||| | Sbjct 757546 CTTATCCTGGATCTTGGCCTTTACATTTTCTATAGTATCCGAGGGTTCAACATTGAGTAT 757605 Query 211076 GATCGTCTTTCCCGTGAGAGTCTT 211099 ||| || || ||||| || || || Sbjct 757606 GATGGTTTTCCCCGTAAGGGTTTT 757629 >seq36 Length=17049061 Score = 136 bits (150), Expect = 9e-27 Identities = 152/203 (75%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 210913 GAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCT 210972 |||| || |||||||| |||||||| || || | ||| || |||||||||| ||||| Sbjct 7362834 GAAGGGTAGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGTGGCCATCTTCCACCTGCT 7362893 Query 210973 TGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTT 211032 ||||||||||||| || | || ||||||||||||| || || || ||||||||||| Sbjct 7362894 TGCCTGCGAAGATCAGCCTCTGCTGGTCAGGAGGAATGCCCTCTTTATCCTGGATCTTGG 7362953 Query 211033 GTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGA 211092 ||||| || || ||||| ||| | || ||||| || | || ||||| || || | Sbjct 7362954 CCTTCACTTTCTCAATGGTATCAATGGGCTCCACCTCCAGGATAATGGTCTTGCCGGTCA 7363013 Query 211093 GAGTCTTTACAAACACCTGCATT 211115 | ||||| | || | ||||||| Sbjct 7363014 GGGTCTTCATGAAGATCTGCATT 7363036 Score = 118 bits (130), Expect = 2e-21 Identities = 134/177 (76%), Gaps = 2/177 (1%) Strand=Plus/Plus Query 210909 AGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGC 210968 |||| |||||| ||||| ||||| ||||| || || | | ||| |||||||||||||| Sbjct 13827138 AGGTAAAGAGTAGACTCCTTTTGAATGTTGTAGTCAGATAAGGTA-TTCCATCTTCCAGC 13827196 Query 210969 TGC-TTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGAT 211027 ||| || || || ||||| || | |||||| ||||| ||| ||| || || | |||||| Sbjct 13827197 TGCTTTCCCGGCAAAGATCAGTCTTTGTTGACCAGGAAGAATTCCATCTTTCTTCTGGAT 13827256 Query 211028 CTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTT 211084 ||| || || ||||| ||||| || || || ||||| ||| ||||| ||||| Sbjct 13827257 CTTGGCCTTTACATTTTCTATGGTATCCAAGACTTTAACCTTGAGGGTGATGGTCTT 13827313 >seq74 Length=6199102 Score = 123 bits (136), Expect = 6e-23 Identities = 135/178 (76%), Gaps = 1/178 (1%) Strand=Plus/Plus Query 210910 GGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCT 210969 |||||||||||||||| ||||| ||| | || || | || | | | ||||||||||||| Sbjct 2523003 GGTGAAGAGTGGACTCCTTTTGAATGCTGTAGTCAGTAAAG-TACATCCATCTTCCAGCC 2523061 Query 210970 GCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCT 211029 |||| ||||| ||||| |||| ||| || |||| ||||| ||||||||| || |||||| Sbjct 2523062 GCTTACCTGCAAAGATCAGGCTTTGCTGATCAGAAGGAATTCCTTCCTTAGCCCGGATCT 2523121 Query 211030 TTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCC 211087 | | || ||||| || || || || ||||| || || ||||| ||||| || Sbjct 2523122 TGGCCATTACATTTTCTATAGTATCCAAGGGCTCAACTTCCAGTGTGATGGTCTTCCC 2523179 >seq1 Length=68039765 Score = 123 bits (136), Expect = 6e-23 Identities = 160/220 (73%), Gaps = 1/220 (0%) Strand=Plus/Minus Query 210895 GAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCC 210954 ||| ||||| || || |||||||||||||| ||||| ||||| || || | ||| | Sbjct 38753666 GAAATCTTAACACTAGATGAAGAGTGGACTCCTTTTGCATGTTGTAGTCAGATCAGGTAC 38753607 Query 210955 TTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTT 211014 ||||| |||||||||||| || | ||||| || | ||| || |||||||||| ||||| Sbjct 38753606 GTCCATTTTCCAGCTGCTTACCATCAAAGATCAGTCTTTGCTGATCAGGAGGAATTCCTT 38753547 Query 211015 CCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAG 211074 |||| ||||| ||||| || || |||| | || || || ||| |||| || Sbjct 38753546 CCTTATCCTGAATCTTGACCTTTACATTTTGTGTAGTATCTCAGGGTTCCGCCTCAAGCA 38753487 Query 211075 TGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || ||| ||||| | || || || ||||| | |||||| Sbjct 38753486 TGGCGGTC-TTCCCCTAAGGGTTTTGACAAAAATCTGCAT 38753448 >seq148 Length=5416653 Score = 118 bits (130), Expect = 2e-21 Identities = 123/160 (77%), Gaps = 1/160 (1%) Strand=Plus/Plus Query 210956 TCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTC 211015 ||||| |||||||||||| || || ||||| || | ||| || ||||| |||| |||||| Sbjct 991105 TCCATATTCCAGCTGCTTACCAGCAAAGATCAGTCTTTGCTGATCAGGTGGAATTCCTTC 991164 Query 211016 CTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG-AG 211074 ||| ||||||||||| || || ||||| || || || ||| |||||| ||||| Sbjct 991165 CTTATCCTGGATCTTGGCCTTTACATTTTCTATAGTATCTGAGGGTTCAACTTCGAGTTA 991224 Query 211075 TGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 |||| || || ||||| || || || ||||| | |||||| Sbjct 991225 TGATGGTTTTCCCCGTAAGGGTTTTGACAAAAATCTGCAT 991264 >seq61 Length=10587387 Score = 100 bits (110), Expect = 7e-16 Identities = 105/137 (77%), Gaps = 2/137 (1%) Strand=Plus/Plus Query 210894 CGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTC 210953 |||||||| | | || |||| ||||| ||| ||||| ||||| || || | | || Sbjct 1945081 CGAAGTCTCAATTCTAGATGAAAAGTGGGCTCCTTTTGAATGTTGTAGTCAGATAAAGTA 1945140 Query 210954 CTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCT 211013 | |||||||||||||||||| || || ||| | | | || || |||||||||| |||| Sbjct 1945141 CATCCATCTTCCAGCTGCTTACCAGCAAAGGTCA--CTCTGCTGATCAGGAGGAATTCCT 1945198 Query 211014 TCCTTGTCCTGGATCTT 211030 ||||| ||||||||||| Sbjct 1945199 TCCTTATCCTGGATCTT 1945215 >seq48 Length=16082888 Score = 100 bits (110), Expect = 7e-16 Identities = 152/215 (71%), Gaps = 5/215 (2%) Strand=Plus/Minus Query 210900 CTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCA 210959 || ||||| ||||| | ||| |||| | |||| || || | ||| ||| | | | Sbjct 15914371 CTCAGGACCAGGTGCATAGTAGACTGT----GGATATTGTAGTT-GCACAGGTGCAGCTA 15914317 Query 210960 TCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTG 211019 |||||||| ||||| ||| || || || | || ||||||| || | || |||||| Sbjct 15914316 CCTTCCAGCAGCTTGTCTGTAAACATCAGCCTCTGCTGGTCAGCGGGGATACCCTCCTTG 15914257 Query 211020 TCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATC 211079 ||||||||||| || || || | |||||||||| | || ||||| || ||||| Sbjct 15914256 TCCTGGATCTTGGCCTTGACATTCTAGATGGTGTCACTGGGCTCCACCTCCAGGGTGATG 15914197 Query 211080 GTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||| | || || ||||| ||||| | |||||| Sbjct 15914196 GTCTTGCTAGTCAGGGTCTTCACAAAGATCTGCAT 15914162 >seq2 Length=36660411 Score = 96.9 bits (106), Expect = 8e-15 Identities = 147/207 (71%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 210909 AGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGC 210968 || |||||| ||||||| |||| || || || | | | | ||||||||||||| Sbjct 30261523 AGATGAAGAATGGACTCCTTTTTAATATTGTAGGTAGATAAACTACATCCATCTTCCAGC 30261464 Query 210969 TGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATC 211028 ||||| || || | ||||| | ||||| |||||||| | ||||||||| ||||||||| Sbjct 30261463 TGCTTACCAGCAACCATAAGTCTTTGTTAATCAGGAGGCATTCCTTCCTTATCCTGGATC 30261404 Query 211029 TT-TTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCC 211087 || | | || ||||| | || || || ||||||| ||| | ||| || || || Sbjct 30261403 TTGGCCTATTACATTTTCTGTAGTATCCAAGGGTTCAACCACGA-ATGGATGGTATTCCC 30261345 Query 211088 CGTGAGAGTCTTTACAAACACCTGCAT 211114 | | || || || || || | |||||| Sbjct 30261344 CATAAGGGTTTTGACGAAAATCTGCAT 30261318 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1158183777359445