Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Dipodomys_20ordii_20[refseq_20GCF_5F000151885.1_202014-12-12]
65,193 sequences; 2,236,368,823 total letters
Query= NC_029692.1
Length=362276
Score E
Sequences producing significant alignments: (Bits) Value
seq66 170 4e-37
seq147 168 2e-36
seq91 156 1e-32
seq84 143 6e-29
seq36 136 9e-27
seq74 123 6e-23
seq1 123 6e-23
seq148 118 2e-21
seq61 100 7e-16
seq48 100 7e-16
seq2 96.9 8e-15
>seq66
Length=5789316
Score = 170 bits (188), Expect = 4e-37
Identities = 165/212 (78%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962
|| || ||||| ||||||||||| || |||||||| || || | ||||| | ||||||
Sbjct 2649879 AGCACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTACGGCCATCT 2649820
Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022
|||||||||||||| || ||||| || | || |||||||| |||| ||||||||||||
Sbjct 2649819 TCCAGCTGCTTGCCCGCAAAGATCAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTGTCC 2649760
Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082
|||||||| || || || |||||||||||| | || ||||| || ||||| |||
Sbjct 2649759 TGGATCTTAGCCTTGACATTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTC 2649700
Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114
|| || || || ||||| || || | ||||||
Sbjct 2649699 TTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 2649668
Score = 159 bits (176), Expect = 8e-34
Identities = 163/213 (77%), Gaps = 0/213 (0%)
Strand=Plus/Minus
Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962
|| || ||||| ||||||||||| || |||||||| || || | ||||| | ||||||
Sbjct 2649651 AGCACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTACGGCCATCT 2649592
Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022
||||||||||||||||| ||||| | | || || ||||| || | || |||||||||
Sbjct 2649591 TCCAGCTGCTTGCCTGCAAAGATCAACCTCTGCTGATCAGGTGGTATGCCCTCCTTGTCC 2649532
Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082
|||||||| || || || |||||||||||| | || ||||| | ||||| |||
Sbjct 2649531 TGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCCACCTCCAAGGTGATGGTC 2649472
Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCATT 211115
|| || || || ||||| ||||| | |||||||
Sbjct 2649471 TTGCCAGTCAGGGTCTTCACAAAGATCTGCATT 2649439
>seq147
Length=2532799
Score = 168 bits (186), Expect = 2e-36
Identities = 165/213 (77%), Gaps = 0/213 (0%)
Strand=Plus/Minus
Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962
||||| ||||| || |||||||| || |||||||| || || | ||| || | ||||||
Sbjct 2383932 AGGACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATCT 2383873
Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022
||||||||||||||||||||||| || | || ||||||||||| | || || || |||
Sbjct 2383872 TCCAGCTGCTTGCCTGCGAAGATCAGCCTCTGCTGGTCAGGAGGGATGCCCTCTTTATCC 2383813
Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082
|||||||| ||||| || || ||||| ||| | |||||||| |||||||| |||
Sbjct 2383812 TGGATCTTGGCCTTCACATTCTCAATGGTATCACTGGGCTCAACCTCTAGAGTGATGGTC 2383753
Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCATT 211115
|| || || | ||||| || || | |||||||
Sbjct 2383752 TTGCCAGTCAAGGTCTTCACGAAGATCTGCATT 2383720
Score = 152 bits (168), Expect = 1e-31
Identities = 161/212 (76%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962
|| || ||||| || ||||||||||| |||||||| || || | ||| || | ||||||
Sbjct 2384160 AGAACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATCT 2384101
Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022
||||||||||||||||||||||| || | || ||||| ||||| | || || || |||
Sbjct 2384100 TCCAGCTGCTTGCCTGCGAAGATCAGCCTCTGCTGGTCGGGAGGGATGCCCTCTTTATCC 2384041
Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082
|||||||| ||||| || || ||||| ||| | || ||||| || || || |||
Sbjct 2384040 TGGATCTTGGCCTTCACATTCTCAATGGTATCACTGGGCTCCACCTCCAGGGTAATGGTC 2383981
Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114
|| || || || ||||| || || | ||||||
Sbjct 2383980 TTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 2383949
>seq91
Length=4965619
Score = 156 bits (172), Expect = 1e-32
Identities = 167/221 (76%), Gaps = 0/221 (0%)
Strand=Plus/Plus
Query 210894 CGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTC 210953
|||||||| | || || |||||||||||||| ||||||||||| || || | | ||
Sbjct 1585555 CGAAGTCTCAATACTAGATGAAGAGTGGACTCCTTTTGGATGTTGTAGTCAGATAAAGTT 1585614
Query 210954 CTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCT 211013
|||||||||||||||||| || || ||||| || | ||| || ||||| | | ||||
Sbjct 1585615 TGTCCATCTTCCAGCTGCTTACCAGCAAAGATCAGTCTTTGCTGATCAGGTAGCATTCCT 1585674
Query 211014 TCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGA 211073
||||| ||||||||||| || || ||||| || || || ||| |||||||| |||
Sbjct 1585675 TCCTTATCCTGGATCTTGGCCTTTACATTTTCCATAGTATCCGAGGGTTCAACCTTGAGT 1585734
Query 211074 GTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114
||||| || || ||||| || || || | || | ||||||
Sbjct 1585735 GTGATGGTTTTCCCCGTAAGGGTTTTAATGAAAATCTGCAT 1585775
>seq84
Length=7487594
Score = 143 bits (158), Expect = 6e-29
Identities = 154/204 (75%), Gaps = 0/204 (0%)
Strand=Plus/Plus
Query 210896 AAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCT 210955
|||||| | || || |||||||||||||| ||||| ||||| |||| | | || |
Sbjct 757426 AAGTCTCAATACTAGATGAAGAGTGGACTCCTTTTGAATGTTGCAATCAGATAAAGTACA 757485
Query 210956 TCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTC 211015
||||||| |||||||||| || || ||| | || | ||| || |||||||||| ||||||
Sbjct 757486 TCCATCTCCCAGCTGCTTACCAGCAAAGTTTAGTCTTTGCTGATCAGGAGGAATTCCTTC 757545
Query 211016 CTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGT 211075
||| ||||||||||| || || ||||| || || || ||| |||||| | ||| |
Sbjct 757546 CTTATCCTGGATCTTGGCCTTTACATTTTCTATAGTATCCGAGGGTTCAACATTGAGTAT 757605
Query 211076 GATCGTCTTTCCCGTGAGAGTCTT 211099
||| || || ||||| || || ||
Sbjct 757606 GATGGTTTTCCCCGTAAGGGTTTT 757629
>seq36
Length=17049061
Score = 136 bits (150), Expect = 9e-27
Identities = 152/203 (75%), Gaps = 0/203 (0%)
Strand=Plus/Plus
Query 210913 GAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCT 210972
|||| || |||||||| |||||||| || || | ||| || |||||||||| |||||
Sbjct 7362834 GAAGGGTAGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGTGGCCATCTTCCACCTGCT 7362893
Query 210973 TGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTT 211032
||||||||||||| || | || ||||||||||||| || || || |||||||||||
Sbjct 7362894 TGCCTGCGAAGATCAGCCTCTGCTGGTCAGGAGGAATGCCCTCTTTATCCTGGATCTTGG 7362953
Query 211033 GTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGA 211092
||||| || || ||||| ||| | || ||||| || | || ||||| || || |
Sbjct 7362954 CCTTCACTTTCTCAATGGTATCAATGGGCTCCACCTCCAGGATAATGGTCTTGCCGGTCA 7363013
Query 211093 GAGTCTTTACAAACACCTGCATT 211115
| ||||| | || | |||||||
Sbjct 7363014 GGGTCTTCATGAAGATCTGCATT 7363036
Score = 118 bits (130), Expect = 2e-21
Identities = 134/177 (76%), Gaps = 2/177 (1%)
Strand=Plus/Plus
Query 210909 AGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGC 210968
|||| |||||| ||||| ||||| ||||| || || | | ||| ||||||||||||||
Sbjct 13827138 AGGTAAAGAGTAGACTCCTTTTGAATGTTGTAGTCAGATAAGGTA-TTCCATCTTCCAGC 13827196
Query 210969 TGC-TTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGAT 211027
||| || || || ||||| || | |||||| ||||| ||| ||| || || | ||||||
Sbjct 13827197 TGCTTTCCCGGCAAAGATCAGTCTTTGTTGACCAGGAAGAATTCCATCTTTCTTCTGGAT 13827256
Query 211028 CTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTT 211084
||| || || ||||| ||||| || || || ||||| ||| ||||| |||||
Sbjct 13827257 CTTGGCCTTTACATTTTCTATGGTATCCAAGACTTTAACCTTGAGGGTGATGGTCTT 13827313
>seq74
Length=6199102
Score = 123 bits (136), Expect = 6e-23
Identities = 135/178 (76%), Gaps = 1/178 (1%)
Strand=Plus/Plus
Query 210910 GGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCT 210969
|||||||||||||||| ||||| ||| | || || | || | | | |||||||||||||
Sbjct 2523003 GGTGAAGAGTGGACTCCTTTTGAATGCTGTAGTCAGTAAAG-TACATCCATCTTCCAGCC 2523061
Query 210970 GCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCT 211029
|||| ||||| ||||| |||| ||| || |||| ||||| ||||||||| || ||||||
Sbjct 2523062 GCTTACCTGCAAAGATCAGGCTTTGCTGATCAGAAGGAATTCCTTCCTTAGCCCGGATCT 2523121
Query 211030 TTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCC 211087
| | || ||||| || || || || ||||| || || ||||| ||||| ||
Sbjct 2523122 TGGCCATTACATTTTCTATAGTATCCAAGGGCTCAACTTCCAGTGTGATGGTCTTCCC 2523179
>seq1
Length=68039765
Score = 123 bits (136), Expect = 6e-23
Identities = 160/220 (73%), Gaps = 1/220 (0%)
Strand=Plus/Minus
Query 210895 GAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCC 210954
||| ||||| || || |||||||||||||| ||||| ||||| || || | ||| |
Sbjct 38753666 GAAATCTTAACACTAGATGAAGAGTGGACTCCTTTTGCATGTTGTAGTCAGATCAGGTAC 38753607
Query 210955 TTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTT 211014
||||| |||||||||||| || | ||||| || | ||| || |||||||||| |||||
Sbjct 38753606 GTCCATTTTCCAGCTGCTTACCATCAAAGATCAGTCTTTGCTGATCAGGAGGAATTCCTT 38753547
Query 211015 CCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAG 211074
|||| ||||| ||||| || || |||| | || || || ||| |||| ||
Sbjct 38753546 CCTTATCCTGAATCTTGACCTTTACATTTTGTGTAGTATCTCAGGGTTCCGCCTCAAGCA 38753487
Query 211075 TGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114
|| ||| ||||| | || || || ||||| | ||||||
Sbjct 38753486 TGGCGGTC-TTCCCCTAAGGGTTTTGACAAAAATCTGCAT 38753448
>seq148
Length=5416653
Score = 118 bits (130), Expect = 2e-21
Identities = 123/160 (77%), Gaps = 1/160 (1%)
Strand=Plus/Plus
Query 210956 TCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTC 211015
||||| |||||||||||| || || ||||| || | ||| || ||||| |||| ||||||
Sbjct 991105 TCCATATTCCAGCTGCTTACCAGCAAAGATCAGTCTTTGCTGATCAGGTGGAATTCCTTC 991164
Query 211016 CTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG-AG 211074
||| ||||||||||| || || ||||| || || || ||| |||||| |||||
Sbjct 991165 CTTATCCTGGATCTTGGCCTTTACATTTTCTATAGTATCTGAGGGTTCAACTTCGAGTTA 991224
Query 211075 TGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114
|||| || || ||||| || || || ||||| | ||||||
Sbjct 991225 TGATGGTTTTCCCCGTAAGGGTTTTGACAAAAATCTGCAT 991264
>seq61
Length=10587387
Score = 100 bits (110), Expect = 7e-16
Identities = 105/137 (77%), Gaps = 2/137 (1%)
Strand=Plus/Plus
Query 210894 CGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTC 210953
|||||||| | | || |||| ||||| ||| ||||| ||||| || || | | ||
Sbjct 1945081 CGAAGTCTCAATTCTAGATGAAAAGTGGGCTCCTTTTGAATGTTGTAGTCAGATAAAGTA 1945140
Query 210954 CTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCT 211013
| |||||||||||||||||| || || ||| | | | || || |||||||||| ||||
Sbjct 1945141 CATCCATCTTCCAGCTGCTTACCAGCAAAGGTCA--CTCTGCTGATCAGGAGGAATTCCT 1945198
Query 211014 TCCTTGTCCTGGATCTT 211030
||||| |||||||||||
Sbjct 1945199 TCCTTATCCTGGATCTT 1945215
>seq48
Length=16082888
Score = 100 bits (110), Expect = 7e-16
Identities = 152/215 (71%), Gaps = 5/215 (2%)
Strand=Plus/Minus
Query 210900 CTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCA 210959
|| ||||| ||||| | ||| |||| | |||| || || | ||| ||| | | |
Sbjct 15914371 CTCAGGACCAGGTGCATAGTAGACTGT----GGATATTGTAGTT-GCACAGGTGCAGCTA 15914317
Query 210960 TCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTG 211019
|||||||| ||||| ||| || || || | || ||||||| || | || ||||||
Sbjct 15914316 CCTTCCAGCAGCTTGTCTGTAAACATCAGCCTCTGCTGGTCAGCGGGGATACCCTCCTTG 15914257
Query 211020 TCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATC 211079
||||||||||| || || || | |||||||||| | || ||||| || |||||
Sbjct 15914256 TCCTGGATCTTGGCCTTGACATTCTAGATGGTGTCACTGGGCTCCACCTCCAGGGTGATG 15914197
Query 211080 GTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114
||||| | || || ||||| ||||| | ||||||
Sbjct 15914196 GTCTTGCTAGTCAGGGTCTTCACAAAGATCTGCAT 15914162
>seq2
Length=36660411
Score = 96.9 bits (106), Expect = 8e-15
Identities = 147/207 (71%), Gaps = 2/207 (1%)
Strand=Plus/Minus
Query 210909 AGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGC 210968
|| |||||| ||||||| |||| || || || | | | | |||||||||||||
Sbjct 30261523 AGATGAAGAATGGACTCCTTTTTAATATTGTAGGTAGATAAACTACATCCATCTTCCAGC 30261464
Query 210969 TGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATC 211028
||||| || || | ||||| | ||||| |||||||| | ||||||||| |||||||||
Sbjct 30261463 TGCTTACCAGCAACCATAAGTCTTTGTTAATCAGGAGGCATTCCTTCCTTATCCTGGATC 30261404
Query 211029 TT-TTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCC 211087
|| | | || ||||| | || || || ||||||| ||| | ||| || || ||
Sbjct 30261403 TTGGCCTATTACATTTTCTGTAGTATCCAAGGGTTCAACCACGA-ATGGATGGTATTCCC 30261345
Query 211088 CGTGAGAGTCTTTACAAACACCTGCAT 211114
| | || || || || || | ||||||
Sbjct 30261344 CATAAGGGTTTTGACGAAAATCTGCAT 30261318
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1158183777359445
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