Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dipodomys_20ordii_20[refseq_20GCF_5F000151885.1_202014-12-12] 65,193 sequences; 2,236,368,823 total letters Query= NC_029898.1 Length=37545 Score E Sequences producing significant alignments: (Bits) Value seq4931 468 1e-127 >seq4931 Length=27746 Score = 468 bits (518), Expect = 1e-127 Identities = 1267/1916 (66%), Gaps = 61/1916 (3%) Strand=Plus/Plus Query 19033 CCAAATAGACCTAACTACATTGGCTTCAGAGACAATTTTATTGGGCTAATGTATTACAAC 19092 ||||| || || || || || || || || || || ||||| ||| |||||| ||| ||| Sbjct 16145 CCAAACAGGCCAAATTATATAGGTTTTAGGGATAACTTTATCGGGTTAATGTTTTATAAC 16204 Query 19093 AGCAATGGCAATCTTGGTGTTTTGGCTGGGCAAGCTTCCCAATTGAATGCTGTTGTTGAT 19152 || ||| ||||| | ||||| || || || ||| | || || | |||||||| | || Sbjct 16205 AGTAATAGCAATTTGGGTGTATTAGCCGGTCAATCGTCACAGCTTAATGCTGTCATCGAC 16264 Query 19153 TTGCAAGACAGAAACACAGAACTGTCATATCAATTAATGCTTGACAGTTTAACTGACAGA 19212 | ||||||||||| |||||| |||||||||| | ||| | || | |||| || ||| Sbjct 16265 CTTCAAGACAGAAATACAGAATTGTCATATCAGCTTATGTTAGATAATTTACACGATAGA 16324 Query 19213 TCCAGATACTTTAGTGTTTGGAACCAGGCTGTAGACAGTTACGATATTGATGTTAGAGTT 19272 | |||| | || | ||||| || || || || || ||| || || || | Sbjct 16325 ACTCGATATTACAGCTTGTGGAATCAAGCCGTGGATTCATATGATCCAGAGGTCCGAATC 16384 Query 19273 ATTGATAACGTAGGTGTGGAAGACGAGATGCCAAATTACTGTTTTCCAATACCAGGTTTC 19332 || || || | || || |||||||| | |||||||| || ||||| || | || | Sbjct 16385 ATAGACAATATTGGAGTAGAAGACGAACTTCCAAATTATTGCTTTCCGTTATCTGGAT-- 16442 Query 19333 AGTAAGCCAGCTAAACAAGTTACAGCTGTAAAATATGAAAAC--ACGTGGCAGACAGATG 19390 || || | | | ||| ||||| || | |||| || | || || || Sbjct 16443 -GTTCTCCTATTGATTA---TACTGCTGTTAA---TCAAAATGGACAAG-CAATCA-ATA 16493 Query 19391 ATACTTA---TGTACAAAGTCCGCTAATTGATGTGGGCAATCTGGA-TGCGATGGAAATC 19446 | | | | || || || | || | || ||| | || ||| ||||||||| Sbjct 16494 ACAATAACCCTGCGCAGGTTC---TTATAGGCAAAGGAAATGTTGAATGC-ATGGAAATC 16549 Query 19447 AACCTCACGGCCAACCTTTGGAGGGGTTTCCTGTATTCCAACGTAGCCCTCTACCTGCCA 19506 ||| | |||||||||| |||| | ||| |||||||| || | || || || ||||| Sbjct 16550 AACATAGCGGCCAACCTGTGGAAGAATTTTCTGTATTCTAATATCGCGCTGTATCTGCCC 16609 Query 19507 GACAAATACAAGTTCACCCCACCCAACATCAAGCTGCCTAACAATACCAACACCTAT--G 19564 || || | || ||| || | || | |||| | || || | |||| | Sbjct 16610 GATAACTTTAAAACCACTCCCGCAAATGTGGTATTGCCGCAGGAT--CAGCGGCTATATG 16667 Query 19565 ATTACATGAATGGCCGCATTCCCTTTAACGGGCTGGTTGATACTTATGTAAACATTGGGG 19624 |||||||||| |||||||| || ||||| || |||| | ||||| || Sbjct 16668 CTTACATGAATTCTCGCATTCCAGCCGGGGGTCTGGTAGAGGATTATATCAACATAGGAA 16727 Query 19625 CGAGGTGGTCCCTGGACGCCATGGACAACGTCAATCCCTTCAACCACCATCGCAATGCCG 19684 | |||||||| | || | ||||||| || ||||| || || || || | ||| | | Sbjct 16728 CCAGGTGGTCAATAGATGTGATGGACACGGTTAATCCATTTAATCATCACAGAAATACTG 16787 Query 19685 GTTTGCGCTATCGGTCTCAGTTGCTGGGTAATGGTCGCTATGCAGAGTTTCACATTCAGG 19744 ||||| | || |||||||| | | || |||||||||||||| ||||| ||||||| Sbjct 16788 GTTTGAGGTACAGGTCTCAGCTATTAGGAAATGGTCGCTATGCTTCCTTTCATATTCAGG 16847 Query 19745 TGCCGCAGAAATTCTTTGCTATCAAGAATCTTCTGCTGCTGCCTGGAACCTACACTTACG 19804 | ||||| || || ||||| | || | | | || ||||| || ||| | |||| ||||| Sbjct 16848 TTCCGCAAAAGTTTTTTGCACTTAAAAGTTTGCTTCTGCTACCGGGATCGTACAGTTACG 16907 Query 19805 AGTGGTCTTTCAGGAAGGATGTGAACATGATTCTGCAGAGCTCTCTGGGTAACGACCTGC 19864 | |||||||| || || ||||| ||||||||| ||||||| |||| || || || ||| Sbjct 16908 AATGGTCTTTTAGAAAAGATGTAAACATGATTTTGCAGAGTACTCTTGGCAATGATCTGA 16967 Query 19865 GTGTCGATGGGGC-----TAATATTGTGATCAAGAGTGTGAACTTGTATGCCAGCTTTTT 19919 | | || || || ||| ||| ||| || | | | | | ||| | || || Sbjct 16968 GGGAGGACGGAGCGTCAGTAACATT-TGAC----AGCATTAGCCTATTTGCTACTTTCTT 17022 Query 19920 CCCTATGTCCCACAACACCGCTTCCACCCTGGAAGCCATGCTGCGTAACGATACCAATGA 19979 || ||||| || ||||| ||||| || |||||| | ||||| || || || || || Sbjct 17023 TCCGATGTCTCATAACACTGCTTCTACTCTGGAAACTATGCTTCGCAATGAGGTTAACGA 17082 Query 19980 TCAGTCTTTCACCGACTACCT---CAGCGCTGCCAACATGTTGTTCCCCATCCCCGCCAA 20036 |||||| ||| |||||| || ||||| | |||||| | | | || || | | Sbjct 17083 TCAGTCCTTCGGCGACTATCTTTCCAGCGTT---AACATGCTTTATGCTATTCCTCCGCA 17139 Query 20037 TGCCACTCAGGTTCCCATTTCAATCCCTGCACGGAACTGGGCCGCCTTCAGAGGCTGGAG 20096 | || || || || || || || ||| |||| ||||| ||||| ||||| ||| Sbjct 17140 TCAAACAACAGTGCCTATCTCTATTCCAGCAAGGAATTGGGCGGCCTTTAGAGGTTGGGC 17199 Query 20097 CTTTACCCGCCTGAAGCAGCATGAGACCCCAGCTTTGGGTTCGCCCTTTGATCCCTACTT 20156 ||||| | || || || || || || ||| | | || || | ||||| || ||||| Sbjct 17200 ATTTACTAGACTAAAACAACAGGAAACACCAACCATTGGCTCTGCATTTGACCCATACTT 17259 Query 20157 TACCTATTCCGGCTCAATTCCCTATTTGGATGGAACTTTCTACCTGAATCATACTTTCAG 20216 || || || |||||||| || |||| ||||| || || || | ||| ||| |||| Sbjct 17260 TAGGTACTCGGGCTCAATCCCGTATTGGGATGCGACCTTTTATTTATCTCACACTATCAG 17319 Query 20217 GAGAGTTTCCATTCAGTTTGATTCATCTGTGAGCTGGCCGGGTAATGACAGGCTGTTGAG 20276 | || |||| ||||||||||| || || || ||||| || |||||||| || || | Sbjct 17320 AAAGGTGGCCATACAGTTTGATTCTTCAGTAAGTTGGCCTGGAAATGACAGACTTTTAAT 17379 Query 20277 TCCCAATGAGTTTGAAATCAAGCGCGCTGTAGATGGGGAGGGTTATAGCATTGCTCAGAG 20336 || ||||| ||| | || || | | || || | ||| || |||| || ||||||| Sbjct 17380 ACCTAATGAATTTCACATAAAAAGAGAGGTGGACGCGGAAGGCTATAACACCTCTCAGAG 17439 Query 20337 TAACATGACCAAAGATTGGTTCCTGATCCAGATGCTGGCGCATTATAATATTGGCTACCA 20396 | || || || ||||||| |||| || ||||| || || || ||||| || ||||| Sbjct 17440 CATAATTACTAAGGATTGGTATATGATTCAAATGCTCGCTCACTACAATATCGGATACCA 17499 Query 20397 GGGATACCATCTGCCCGATGCTTACAAGGACAGGCTGTATTCCTTCCTACATAATTTCAT 20456 || | || || ||| | ||| || || || |||||||||| || ||||| Sbjct 17500 AGGTTTTCACCTACCCACAGATTATAAAGATAGATTGTATTCCTTTTTAAGAAATTTTGA 17559 Query 20457 CCCCATGACCCGCCAGGTAATTGACGAGACCAATGTCAACACCG---GCTACCAGGCCGT 20513 |||||| | || | ||| || | || || || | || || |||| Sbjct 17560 ACCCATGTGTAGACA---AGTTGTGGATCC---TGGTAAGACGGAAAAATATCAACCCGT 17613 Query 20514 TTCCATCCTCA--ACCAGCATAACAACAGCGGGTTTGTTGGCTA-CATGAATCCAGTGGC 20570 | | || | | | |||||||| || || ||| | | ||| | || ||| Sbjct 17614 TGC--TCTTAAATATCAGCATAATAATTCAGGTTTTAAAAACCATTATGGACCCTTTGG- 17670 Query 20571 CACCCGGGAGGGGCACCCCTACCCGGCTAACTGGCCCTACCCGCTCATCGGACCCAATGC 20630 || | || || || || || ||||||||| | ||||||||||||| | || Sbjct 17671 ---GCGACAAGGCCATCCTTATCCCTGTAACTGGCCTTTCCCGCTCATCGGAGAACAGGC 17727 Query 20631 CTACGCCACCGTCACCCAGCGCAAGTTCCTCTGCGATCGGGTGCTCTGGCGCATACCCTT 20690 ||| | || ||| | || || | || || | || ||| | || || || Sbjct 17728 AGGTAAAACCATTACTCAGAGAAAATTTTTATGTGACAGAACACTGTGGAGGATTCCGTT 17787 Query 20691 CTCCTCCAACTTCATGTCCATGGGCACGCTCACCGACCTGGGCCAGAACCTGCTGTACGC 20750 |||||||||||| ||||||||||| || || || || ||||| || || |||| || || Sbjct 17788 CTCCTCCAACTTTATGTCCATGGGAACACTAACAGATCTGGGACAAAATTTGCTATATGC 17847 Query 20751 TAATGCCGCACACGCGCTCGACATGATCTTCGAAGTCGACCCCATTGACGAGCCCACCCT 20810 ||| | || || || | ||||||| ||||||| || | || || || || || Sbjct 17848 AAATTCAGCTCATGCTTTAGACATGACAGTCGAAGTAGATTCAATGGAGGAACCAACTTA 17907 Query 20811 GCTCTATG-TTCTCTTCGAAGTCTTTGACGTCTGCCGCGTGCACCAGCCTCACCGGGGCG 20869 ||| ||| | || || ||||| |||||| | ||| | ||||| |||||||| || || | Sbjct 17908 TCTC-ATGATGCTATTTGAAGTATTTGACATGTGCAGAGTGCATCAGCCTCAACGAGGTG 17966 Query 20870 TTATCGAAACCGTCTACCTCCGAACCCCCTTCAGCGCGGGTAACGCCACCACATAA 20925 | || ||| | || || |||||||||| || ||||||||| | |||||| Sbjct 17967 TCATAGAAGTTATTTATCTAAGAACCCCCTTTTCGGCAGGTAACGCCGCAACATAA 18022 Score = 170 bits (188), Expect = 5e-38 Identities = 477/727 (66%), Gaps = 4/727 (1%) Strand=Plus/Plus Query 4127 TACATCCATTGCATACTATCATTCTCGGGGCAGGTGTTGTAGATGATCCAGTCATAGTGG 4186 ||||||||||| ||| | | | ||| |||| |||| | |||||| ||||| Sbjct 3595 TACATCCATTGTTGACTTTGACACGTAGGGGTGGTGGTGTACACGATCCAATCATAAGAT 3654 Query 4187 GAGTTTTGGGAGTAGTAGTTAAAGATATCTTTCAAGAGGAGGGAGATGGCAAGGGGGAGA 4246 |||| | ||| | |||| |||||||||||| || | |||| ||| || | ||| || Sbjct 3655 GAGTGTAAGGAATGGTAGGCAAAGATATCTTTTAATAATAGGGTGATTGCTAAGGGTAGG 3714 Query 4247 CCCTTGGTGTAAGTGTTAACAAAGCGGGTGAGCTGGGTGGGTTGCATGCGGGGGCTGATG 4306 || || || ||||| |||| ||| | | | ||||| | ||||||||| |||||| | Sbjct 3715 CCTTTAGTATAAGTATTAATAAATCTGTTTAGCTGAGCGGGTTGCATTTTGGGGCTCAGT 3774 Query 4307 AGGTGGAGTTTGGCCTGGATCTTGAGGTTGGAGATGTTACCTCCCTGGTCCTTGCGGGGG 4366 | || ||| || || || || || |||| || || || | || || || ||| Sbjct 3775 ATATGATATTTAGCTTGAATTTTTAGTGTGGATATATTTCCACTTAAATCTTTTCGCGGG 3834 Query 4367 TTCATATTATGCAAGACCACCATGACACAGTAGCCAGTACACTTGGGGAACTTGTCATGC 4426 ||||||||||| || ||||| | | | |||| || | ||| ||| | || ||| Sbjct 3835 TTCATATTATGTAATACCACAAACAGATAGTACCCGCTGCACGAGGGATATTTTTCAAAT 3894 Query 4427 AACTTTGAGGGGAAGGCATGGAAGAATTTAGCCACCCCCTTGTGTCTGCCCAGCTCTTCC 4486 | ||||| || || || || || ||||| || | ||| | || | | |||| Sbjct 3895 AGTTTTGAAGGAAACGCGTGAAAAAATTTTGCAATAGGGCTGTTCCCTCCTAAATTTTCC 3954 Query 4487 ATGCACTCATCCATGATAATGGCAATGGGCCCCTTGGAGGCGGCTTGGGCAAAGACATTT 4546 || |||||||| ||||||||||| ||||| || | ||| || || |||| ||| Sbjct 3955 ATACACTCATCAATGATAATGGCTATGGGTCCGGTTTTGGCCGCCTGTACAAATTTATTA 4014 Query 4547 TGGGGGTGGGTGACATCATAATTATAGTCTTGCAAGAGCTCATCATAGGACATTTTTACA 4606 | || || | ||||||||| | || | ||||| || | || || | || | Sbjct 4015 TTTGGATGCCCTAAATCATAATTTTCTTCGTTTAAGAGATCCTTGTACGATAGTTGCGCG 4074 Query 4607 AATTTGGGCATGAGGGTTCCGCTCTGGGGGACGATGGTGTCA-TCGGGCCCGGGTTGGTA 4665 ||| || | | || || |||| || || || || || ||| ||| || Sbjct 4075 AATCGAGGAGTTAATGTACCAGTCTGAGGCACAATTTCACCATTCTTTCCCATGTT-ATA 4133 Query 4666 GTTTCCCTCACAGATCTGGGTCTCCCAAGACATGATCTCTTGAGGGGGGATCATGTCCAC 4725 ||||||||| || || | | ||| ||||| || || || |||||||||||||| | Sbjct 4134 GTTTCCCTCTATAATTTGTGCTTTCCATGACATAATTTCCTGTGGGGGGATCATGTCTGC 4193 Query 4726 CTGGGGGGCGATAAAGAAGACGGTCTCGGGGGCTGG-TGTGATGAGGTGGGCAGACATGA 4784 | |||| | |||||| | ||||| ||||| || | | || | ||| | ||||| | Sbjct 4194 ATAAGGGGTTACAAAGAATATAGTCTCCGGGGCGGGATTTAATAATTTGGAC-GACATAA 4252 Query 4785 GGTTGCGAAGCAACTGGGACTTGCCCGAGCCGGTGGGCCCGTAGATGACCCCGATGACGG 4844 | || | | || ||||| || || || || || || || |||||||| || || | Sbjct 4253 GATTTCTCAATAATTGGGATTTTCCACTACCAGTTGGACCATATATGACCCCAATCACCG 4312 Query 4845 GCTGGGT 4851 | || || Sbjct 4313 GTTGAGT 4319 Score = 165 bits (182), Expect = 2e-36 Identities = 259/371 (70%), Gaps = 0/371 (0%) Strand=Plus/Plus Query 18163 CCGAAGATGGCCACCCCTTCGATGCTGCCGCAATGGTCCTACATGCACATCGCCGGTCAG 18222 |||||||||||||| || |||||||| ||||||||||| ||| | || ||||| || || Sbjct 15308 CCGAAGATGGCCACTCCCTCGATGCTCCCGCAATGGTCTTACTTACATATCGCAGGACAA 15367 Query 18223 GATGCGTCAGAGTACCTGTCGCCCGGCTTGGTGCAGTTCGCCCGGGCCACGGAAACGTAC 18282 ||||| ||||| || | || || | ||| || || || | || || ||||||||| Sbjct 15368 GATGCTTCAGAATATTTATCTCCTGCGTTGTGTCAATTTGCAAGCGCAACCGAAACGTAC 15427 Query 18283 TTTGCCCTGGGCAACAAGTTTAGGAACCCCACGGTGGCTCCCACTCACGATGTGACCACA 18342 ||| |||| || | || ||||| || || ||||| || || || |||||||| || || Sbjct 15428 TTTTCCCTAAGCGATAAATTTAGAAATCCGACGGTTGCGCCGACACACGATGTAACTACG 15487 Query 18343 GAACGTTCTCAGCGACTGCAGTTGCGCTTCGTGCCCATCAACCAGGAGGACACGCAGTAC 18402 ||| | || ||| |||| || || | || || || | | || || || ||||| Sbjct 15488 GAAAGATCGCAGAGACTACAATTAAGATTTGTTCCAGCGGAAAAAGAAGATACACAGTAT 15547 Query 18403 ACTTACAAGACCCGCTTTCAGCTGGCCGTGGGTGACAACCGGGTGCTGGACATGGCCAGC 18462 |||| || |||| ||||| || |||| ||||| ||| | | | || ||| || Sbjct 15548 ACTTTTAAAGCCCGATTTCAACTCACCGTCGGTGATAACAGAATATTAGATTTGGGTAGT 15607 Query 18463 ACGTACTTTGACATCCGCGGGATCATTGACCGCGGCCCCAGCTTCAAACCCTACAGCGGC 18522 | || ||||| || || | || ||| | || ||| || ||||| ||||| ||| Sbjct 15608 AGTTATTTTGATATAAAGGGAAAGATAGACAGAGGTCCCTCTTTTAAACCTTACAGTGGC 15667 Query 18523 ACGGCTTACAA 18533 || || ||||| Sbjct 15668 ACAGCATACAA 15678 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 119929482633662