Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Dipodomys_20ordii_20[refseq_20GCF_5F000151885.1_202014-12-12]
65,193 sequences; 2,236,368,823 total letters
Query= NC_029898.1
Length=37545
Score E
Sequences producing significant alignments: (Bits) Value
seq4931 468 1e-127
>seq4931
Length=27746
Score = 468 bits (518), Expect = 1e-127
Identities = 1267/1916 (66%), Gaps = 61/1916 (3%)
Strand=Plus/Plus
Query 19033 CCAAATAGACCTAACTACATTGGCTTCAGAGACAATTTTATTGGGCTAATGTATTACAAC 19092
||||| || || || || || || || || || || ||||| ||| |||||| ||| |||
Sbjct 16145 CCAAACAGGCCAAATTATATAGGTTTTAGGGATAACTTTATCGGGTTAATGTTTTATAAC 16204
Query 19093 AGCAATGGCAATCTTGGTGTTTTGGCTGGGCAAGCTTCCCAATTGAATGCTGTTGTTGAT 19152
|| ||| ||||| | ||||| || || || ||| | || || | |||||||| | ||
Sbjct 16205 AGTAATAGCAATTTGGGTGTATTAGCCGGTCAATCGTCACAGCTTAATGCTGTCATCGAC 16264
Query 19153 TTGCAAGACAGAAACACAGAACTGTCATATCAATTAATGCTTGACAGTTTAACTGACAGA 19212
| ||||||||||| |||||| |||||||||| | ||| | || | |||| || |||
Sbjct 16265 CTTCAAGACAGAAATACAGAATTGTCATATCAGCTTATGTTAGATAATTTACACGATAGA 16324
Query 19213 TCCAGATACTTTAGTGTTTGGAACCAGGCTGTAGACAGTTACGATATTGATGTTAGAGTT 19272
| |||| | || | ||||| || || || || || ||| || || || |
Sbjct 16325 ACTCGATATTACAGCTTGTGGAATCAAGCCGTGGATTCATATGATCCAGAGGTCCGAATC 16384
Query 19273 ATTGATAACGTAGGTGTGGAAGACGAGATGCCAAATTACTGTTTTCCAATACCAGGTTTC 19332
|| || || | || || |||||||| | |||||||| || ||||| || | || |
Sbjct 16385 ATAGACAATATTGGAGTAGAAGACGAACTTCCAAATTATTGCTTTCCGTTATCTGGAT-- 16442
Query 19333 AGTAAGCCAGCTAAACAAGTTACAGCTGTAAAATATGAAAAC--ACGTGGCAGACAGATG 19390
|| || | | | ||| ||||| || | |||| || | || || ||
Sbjct 16443 -GTTCTCCTATTGATTA---TACTGCTGTTAA---TCAAAATGGACAAG-CAATCA-ATA 16493
Query 19391 ATACTTA---TGTACAAAGTCCGCTAATTGATGTGGGCAATCTGGA-TGCGATGGAAATC 19446
| | | | || || || | || | || ||| | || ||| |||||||||
Sbjct 16494 ACAATAACCCTGCGCAGGTTC---TTATAGGCAAAGGAAATGTTGAATGC-ATGGAAATC 16549
Query 19447 AACCTCACGGCCAACCTTTGGAGGGGTTTCCTGTATTCCAACGTAGCCCTCTACCTGCCA 19506
||| | |||||||||| |||| | ||| |||||||| || | || || || |||||
Sbjct 16550 AACATAGCGGCCAACCTGTGGAAGAATTTTCTGTATTCTAATATCGCGCTGTATCTGCCC 16609
Query 19507 GACAAATACAAGTTCACCCCACCCAACATCAAGCTGCCTAACAATACCAACACCTAT--G 19564
|| || | || ||| || | || | |||| | || || | |||| |
Sbjct 16610 GATAACTTTAAAACCACTCCCGCAAATGTGGTATTGCCGCAGGAT--CAGCGGCTATATG 16667
Query 19565 ATTACATGAATGGCCGCATTCCCTTTAACGGGCTGGTTGATACTTATGTAAACATTGGGG 19624
|||||||||| |||||||| || ||||| || |||| | ||||| ||
Sbjct 16668 CTTACATGAATTCTCGCATTCCAGCCGGGGGTCTGGTAGAGGATTATATCAACATAGGAA 16727
Query 19625 CGAGGTGGTCCCTGGACGCCATGGACAACGTCAATCCCTTCAACCACCATCGCAATGCCG 19684
| |||||||| | || | ||||||| || ||||| || || || || | ||| | |
Sbjct 16728 CCAGGTGGTCAATAGATGTGATGGACACGGTTAATCCATTTAATCATCACAGAAATACTG 16787
Query 19685 GTTTGCGCTATCGGTCTCAGTTGCTGGGTAATGGTCGCTATGCAGAGTTTCACATTCAGG 19744
||||| | || |||||||| | | || |||||||||||||| ||||| |||||||
Sbjct 16788 GTTTGAGGTACAGGTCTCAGCTATTAGGAAATGGTCGCTATGCTTCCTTTCATATTCAGG 16847
Query 19745 TGCCGCAGAAATTCTTTGCTATCAAGAATCTTCTGCTGCTGCCTGGAACCTACACTTACG 19804
| ||||| || || ||||| | || | | | || ||||| || ||| | |||| |||||
Sbjct 16848 TTCCGCAAAAGTTTTTTGCACTTAAAAGTTTGCTTCTGCTACCGGGATCGTACAGTTACG 16907
Query 19805 AGTGGTCTTTCAGGAAGGATGTGAACATGATTCTGCAGAGCTCTCTGGGTAACGACCTGC 19864
| |||||||| || || ||||| ||||||||| ||||||| |||| || || || |||
Sbjct 16908 AATGGTCTTTTAGAAAAGATGTAAACATGATTTTGCAGAGTACTCTTGGCAATGATCTGA 16967
Query 19865 GTGTCGATGGGGC-----TAATATTGTGATCAAGAGTGTGAACTTGTATGCCAGCTTTTT 19919
| | || || || ||| ||| ||| || | | | | | ||| | || ||
Sbjct 16968 GGGAGGACGGAGCGTCAGTAACATT-TGAC----AGCATTAGCCTATTTGCTACTTTCTT 17022
Query 19920 CCCTATGTCCCACAACACCGCTTCCACCCTGGAAGCCATGCTGCGTAACGATACCAATGA 19979
|| ||||| || ||||| ||||| || |||||| | ||||| || || || || ||
Sbjct 17023 TCCGATGTCTCATAACACTGCTTCTACTCTGGAAACTATGCTTCGCAATGAGGTTAACGA 17082
Query 19980 TCAGTCTTTCACCGACTACCT---CAGCGCTGCCAACATGTTGTTCCCCATCCCCGCCAA 20036
|||||| ||| |||||| || ||||| | |||||| | | | || || | |
Sbjct 17083 TCAGTCCTTCGGCGACTATCTTTCCAGCGTT---AACATGCTTTATGCTATTCCTCCGCA 17139
Query 20037 TGCCACTCAGGTTCCCATTTCAATCCCTGCACGGAACTGGGCCGCCTTCAGAGGCTGGAG 20096
| || || || || || || || ||| |||| ||||| ||||| ||||| |||
Sbjct 17140 TCAAACAACAGTGCCTATCTCTATTCCAGCAAGGAATTGGGCGGCCTTTAGAGGTTGGGC 17199
Query 20097 CTTTACCCGCCTGAAGCAGCATGAGACCCCAGCTTTGGGTTCGCCCTTTGATCCCTACTT 20156
||||| | || || || || || || ||| | | || || | ||||| || |||||
Sbjct 17200 ATTTACTAGACTAAAACAACAGGAAACACCAACCATTGGCTCTGCATTTGACCCATACTT 17259
Query 20157 TACCTATTCCGGCTCAATTCCCTATTTGGATGGAACTTTCTACCTGAATCATACTTTCAG 20216
|| || || |||||||| || |||| ||||| || || || | ||| ||| ||||
Sbjct 17260 TAGGTACTCGGGCTCAATCCCGTATTGGGATGCGACCTTTTATTTATCTCACACTATCAG 17319
Query 20217 GAGAGTTTCCATTCAGTTTGATTCATCTGTGAGCTGGCCGGGTAATGACAGGCTGTTGAG 20276
| || |||| ||||||||||| || || || ||||| || |||||||| || || |
Sbjct 17320 AAAGGTGGCCATACAGTTTGATTCTTCAGTAAGTTGGCCTGGAAATGACAGACTTTTAAT 17379
Query 20277 TCCCAATGAGTTTGAAATCAAGCGCGCTGTAGATGGGGAGGGTTATAGCATTGCTCAGAG 20336
|| ||||| ||| | || || | | || || | ||| || |||| || |||||||
Sbjct 17380 ACCTAATGAATTTCACATAAAAAGAGAGGTGGACGCGGAAGGCTATAACACCTCTCAGAG 17439
Query 20337 TAACATGACCAAAGATTGGTTCCTGATCCAGATGCTGGCGCATTATAATATTGGCTACCA 20396
| || || || ||||||| |||| || ||||| || || || ||||| || |||||
Sbjct 17440 CATAATTACTAAGGATTGGTATATGATTCAAATGCTCGCTCACTACAATATCGGATACCA 17499
Query 20397 GGGATACCATCTGCCCGATGCTTACAAGGACAGGCTGTATTCCTTCCTACATAATTTCAT 20456
|| | || || ||| | ||| || || || |||||||||| || |||||
Sbjct 17500 AGGTTTTCACCTACCCACAGATTATAAAGATAGATTGTATTCCTTTTTAAGAAATTTTGA 17559
Query 20457 CCCCATGACCCGCCAGGTAATTGACGAGACCAATGTCAACACCG---GCTACCAGGCCGT 20513
|||||| | || | ||| || | || || || | || || ||||
Sbjct 17560 ACCCATGTGTAGACA---AGTTGTGGATCC---TGGTAAGACGGAAAAATATCAACCCGT 17613
Query 20514 TTCCATCCTCA--ACCAGCATAACAACAGCGGGTTTGTTGGCTA-CATGAATCCAGTGGC 20570
| | || | | | |||||||| || || ||| | | ||| | || |||
Sbjct 17614 TGC--TCTTAAATATCAGCATAATAATTCAGGTTTTAAAAACCATTATGGACCCTTTGG- 17670
Query 20571 CACCCGGGAGGGGCACCCCTACCCGGCTAACTGGCCCTACCCGCTCATCGGACCCAATGC 20630
|| | || || || || || ||||||||| | ||||||||||||| | ||
Sbjct 17671 ---GCGACAAGGCCATCCTTATCCCTGTAACTGGCCTTTCCCGCTCATCGGAGAACAGGC 17727
Query 20631 CTACGCCACCGTCACCCAGCGCAAGTTCCTCTGCGATCGGGTGCTCTGGCGCATACCCTT 20690
||| | || ||| | || || | || || | || ||| | || || ||
Sbjct 17728 AGGTAAAACCATTACTCAGAGAAAATTTTTATGTGACAGAACACTGTGGAGGATTCCGTT 17787
Query 20691 CTCCTCCAACTTCATGTCCATGGGCACGCTCACCGACCTGGGCCAGAACCTGCTGTACGC 20750
|||||||||||| ||||||||||| || || || || ||||| || || |||| || ||
Sbjct 17788 CTCCTCCAACTTTATGTCCATGGGAACACTAACAGATCTGGGACAAAATTTGCTATATGC 17847
Query 20751 TAATGCCGCACACGCGCTCGACATGATCTTCGAAGTCGACCCCATTGACGAGCCCACCCT 20810
||| | || || || | ||||||| ||||||| || | || || || || ||
Sbjct 17848 AAATTCAGCTCATGCTTTAGACATGACAGTCGAAGTAGATTCAATGGAGGAACCAACTTA 17907
Query 20811 GCTCTATG-TTCTCTTCGAAGTCTTTGACGTCTGCCGCGTGCACCAGCCTCACCGGGGCG 20869
||| ||| | || || ||||| |||||| | ||| | ||||| |||||||| || || |
Sbjct 17908 TCTC-ATGATGCTATTTGAAGTATTTGACATGTGCAGAGTGCATCAGCCTCAACGAGGTG 17966
Query 20870 TTATCGAAACCGTCTACCTCCGAACCCCCTTCAGCGCGGGTAACGCCACCACATAA 20925
| || ||| | || || |||||||||| || ||||||||| | ||||||
Sbjct 17967 TCATAGAAGTTATTTATCTAAGAACCCCCTTTTCGGCAGGTAACGCCGCAACATAA 18022
Score = 170 bits (188), Expect = 5e-38
Identities = 477/727 (66%), Gaps = 4/727 (1%)
Strand=Plus/Plus
Query 4127 TACATCCATTGCATACTATCATTCTCGGGGCAGGTGTTGTAGATGATCCAGTCATAGTGG 4186
||||||||||| ||| | | | ||| |||| |||| | |||||| |||||
Sbjct 3595 TACATCCATTGTTGACTTTGACACGTAGGGGTGGTGGTGTACACGATCCAATCATAAGAT 3654
Query 4187 GAGTTTTGGGAGTAGTAGTTAAAGATATCTTTCAAGAGGAGGGAGATGGCAAGGGGGAGA 4246
|||| | ||| | |||| |||||||||||| || | |||| ||| || | ||| ||
Sbjct 3655 GAGTGTAAGGAATGGTAGGCAAAGATATCTTTTAATAATAGGGTGATTGCTAAGGGTAGG 3714
Query 4247 CCCTTGGTGTAAGTGTTAACAAAGCGGGTGAGCTGGGTGGGTTGCATGCGGGGGCTGATG 4306
|| || || ||||| |||| ||| | | | ||||| | ||||||||| |||||| |
Sbjct 3715 CCTTTAGTATAAGTATTAATAAATCTGTTTAGCTGAGCGGGTTGCATTTTGGGGCTCAGT 3774
Query 4307 AGGTGGAGTTTGGCCTGGATCTTGAGGTTGGAGATGTTACCTCCCTGGTCCTTGCGGGGG 4366
| || ||| || || || || || |||| || || || | || || || |||
Sbjct 3775 ATATGATATTTAGCTTGAATTTTTAGTGTGGATATATTTCCACTTAAATCTTTTCGCGGG 3834
Query 4367 TTCATATTATGCAAGACCACCATGACACAGTAGCCAGTACACTTGGGGAACTTGTCATGC 4426
||||||||||| || ||||| | | | |||| || | ||| ||| | || |||
Sbjct 3835 TTCATATTATGTAATACCACAAACAGATAGTACCCGCTGCACGAGGGATATTTTTCAAAT 3894
Query 4427 AACTTTGAGGGGAAGGCATGGAAGAATTTAGCCACCCCCTTGTGTCTGCCCAGCTCTTCC 4486
| ||||| || || || || || ||||| || | ||| | || | | ||||
Sbjct 3895 AGTTTTGAAGGAAACGCGTGAAAAAATTTTGCAATAGGGCTGTTCCCTCCTAAATTTTCC 3954
Query 4487 ATGCACTCATCCATGATAATGGCAATGGGCCCCTTGGAGGCGGCTTGGGCAAAGACATTT 4546
|| |||||||| ||||||||||| ||||| || | ||| || || |||| |||
Sbjct 3955 ATACACTCATCAATGATAATGGCTATGGGTCCGGTTTTGGCCGCCTGTACAAATTTATTA 4014
Query 4547 TGGGGGTGGGTGACATCATAATTATAGTCTTGCAAGAGCTCATCATAGGACATTTTTACA 4606
| || || | ||||||||| | || | ||||| || | || || | || |
Sbjct 4015 TTTGGATGCCCTAAATCATAATTTTCTTCGTTTAAGAGATCCTTGTACGATAGTTGCGCG 4074
Query 4607 AATTTGGGCATGAGGGTTCCGCTCTGGGGGACGATGGTGTCA-TCGGGCCCGGGTTGGTA 4665
||| || | | || || |||| || || || || || ||| ||| ||
Sbjct 4075 AATCGAGGAGTTAATGTACCAGTCTGAGGCACAATTTCACCATTCTTTCCCATGTT-ATA 4133
Query 4666 GTTTCCCTCACAGATCTGGGTCTCCCAAGACATGATCTCTTGAGGGGGGATCATGTCCAC 4725
||||||||| || || | | ||| ||||| || || || |||||||||||||| |
Sbjct 4134 GTTTCCCTCTATAATTTGTGCTTTCCATGACATAATTTCCTGTGGGGGGATCATGTCTGC 4193
Query 4726 CTGGGGGGCGATAAAGAAGACGGTCTCGGGGGCTGG-TGTGATGAGGTGGGCAGACATGA 4784
| |||| | |||||| | ||||| ||||| || | | || | ||| | ||||| |
Sbjct 4194 ATAAGGGGTTACAAAGAATATAGTCTCCGGGGCGGGATTTAATAATTTGGAC-GACATAA 4252
Query 4785 GGTTGCGAAGCAACTGGGACTTGCCCGAGCCGGTGGGCCCGTAGATGACCCCGATGACGG 4844
| || | | || ||||| || || || || || || || |||||||| || || |
Sbjct 4253 GATTTCTCAATAATTGGGATTTTCCACTACCAGTTGGACCATATATGACCCCAATCACCG 4312
Query 4845 GCTGGGT 4851
| || ||
Sbjct 4313 GTTGAGT 4319
Score = 165 bits (182), Expect = 2e-36
Identities = 259/371 (70%), Gaps = 0/371 (0%)
Strand=Plus/Plus
Query 18163 CCGAAGATGGCCACCCCTTCGATGCTGCCGCAATGGTCCTACATGCACATCGCCGGTCAG 18222
|||||||||||||| || |||||||| ||||||||||| ||| | || ||||| || ||
Sbjct 15308 CCGAAGATGGCCACTCCCTCGATGCTCCCGCAATGGTCTTACTTACATATCGCAGGACAA 15367
Query 18223 GATGCGTCAGAGTACCTGTCGCCCGGCTTGGTGCAGTTCGCCCGGGCCACGGAAACGTAC 18282
||||| ||||| || | || || | ||| || || || | || || |||||||||
Sbjct 15368 GATGCTTCAGAATATTTATCTCCTGCGTTGTGTCAATTTGCAAGCGCAACCGAAACGTAC 15427
Query 18283 TTTGCCCTGGGCAACAAGTTTAGGAACCCCACGGTGGCTCCCACTCACGATGTGACCACA 18342
||| |||| || | || ||||| || || ||||| || || || |||||||| || ||
Sbjct 15428 TTTTCCCTAAGCGATAAATTTAGAAATCCGACGGTTGCGCCGACACACGATGTAACTACG 15487
Query 18343 GAACGTTCTCAGCGACTGCAGTTGCGCTTCGTGCCCATCAACCAGGAGGACACGCAGTAC 18402
||| | || ||| |||| || || | || || || | | || || || |||||
Sbjct 15488 GAAAGATCGCAGAGACTACAATTAAGATTTGTTCCAGCGGAAAAAGAAGATACACAGTAT 15547
Query 18403 ACTTACAAGACCCGCTTTCAGCTGGCCGTGGGTGACAACCGGGTGCTGGACATGGCCAGC 18462
|||| || |||| ||||| || |||| ||||| ||| | | | || ||| ||
Sbjct 15548 ACTTTTAAAGCCCGATTTCAACTCACCGTCGGTGATAACAGAATATTAGATTTGGGTAGT 15607
Query 18463 ACGTACTTTGACATCCGCGGGATCATTGACCGCGGCCCCAGCTTCAAACCCTACAGCGGC 18522
| || ||||| || || | || ||| | || ||| || ||||| ||||| |||
Sbjct 15608 AGTTATTTTGATATAAAGGGAAAGATAGACAGAGGTCCCTCTTTTAAACCTTACAGTGGC 15667
Query 18523 ACGGCTTACAA 18533
|| || |||||
Sbjct 15668 ACAGCATACAA 15678
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 119929482633662
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