Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Dipodomys_20ordii_20[refseq_20GCF_5F000151885.1_202014-12-12]
65,193 sequences; 2,236,368,823 total letters
Query= NC_029899.1
Length=37556
Score E
Sequences producing significant alignments: (Bits) Value
seq4931 500 2e-137
>seq4931
Length=27746
Score = 500 bits (554), Expect = 2e-137
Identities = 1271/1914 (66%), Gaps = 51/1914 (3%)
Strand=Plus/Plus
Query 19014 CCAAATCGACCAAACTACATTGGCTTCAGAGACAATTTTATTGGTCTAATGTATTACAAC 19073
||||| | ||||| || || || || || || || ||||| || |||||| ||| |||
Sbjct 16145 CCAAACAGGCCAAATTATATAGGTTTTAGGGATAACTTTATCGGGTTAATGTTTTATAAC 16204
Query 19074 AGCAATGGTAATTTGGGGGTGCTTGCTGGTCAGTCTTCACAGTTGAATGCTGTTGTGGAT 19133
|| ||| | |||||||| || | || ||||| || |||||| | |||||||| | ||
Sbjct 16205 AGTAATAGCAATTTGGGTGTATTAGCCGGTCAATCGTCACAGCTTAATGCTGTCATCGAC 16264
Query 19134 TTGCAAGACAGAAACACCGAACTGTCATATCAATTAATGCTTGACAGTTTAACTGACAGA 19193
| ||||||||||| || ||| |||||||||| | ||| | || | |||| || |||
Sbjct 16265 CTTCAAGACAGAAATACAGAATTGTCATATCAGCTTATGTTAGATAATTTACACGATAGA 16324
Query 19194 TCTAGGTATTTTAGTGTCTGGAATCAAGCAGTTGACAGTTATGACATTGATGTCAGAGTG 19253
|| | |||| || | ||||||||||| || || ||||| || ||| || |
Sbjct 16325 ACTCGATATTACAGCTTGTGGAATCAAGCCGTGGATTCATATGATCCAGAGGTCCGAATC 16384
Query 19254 ATTGAAAACAATGGTGTTGAAGATGAAATGCCGAATTACTGCTTTCCAATTTCGGGATTC 19313
|| || || | ||| || ||||| ||| | || ||||| |||||||| | || ||||
Sbjct 16385 ATAGACAATATTGGAGTAGAAGACGAACTTCCAAATTATTGCTTTCCGTTATCTGGAT-- 16442
Query 19314 AGCACTCCAAGTAGTAAAATCAATGCCGTAAAGTATGATACAGGGACTAATGCATGGGTT 19373
| |||| | | | | | ||| || || | || |||| | ||| |
Sbjct 16443 -GTTCTCCTATTGATTATAC---TGCTGTTAATCAAAAT----GGACAA--GCAATCAAT 16492
Query 19374 ACAGATACTAGCTTTGTCCAAAGTCCATTTATTGATCTTGGAAATCTAGA-TGCAATGGA 19432
| | | || | || || || |||| | |||||| | || |||| ||||
Sbjct 16493 A---ACAATAACCCTGCGCAGGTTC---TTATAGGCAAAGGAAATGTTGAATGCA-TGGA 16545
Query 19433 AATTAATCTAACAGCTAATCTGTGGCGAAGCTTTTTGTATTCAAATGTTGCTCTGTATTT 19492
||| || || | || || |||||| | ||| ||||||| ||| | || |||||| |
Sbjct 16546 AATCAACATAGCGGCCAACCTGTGGAAGAATTTTCTGTATTCTAATATCGCGCTGTATCT 16605
Query 19493 GCCAGATAAGTACAAATTCACTCCTCAAAACATCACGCTGCCTACCAATA--CTAATACG 19550
||| ||||| | ||| |||||| ||| | |||| || | ||
Sbjct 16606 GCCCGATAACTTTAAAACCACTCCCGCAAATGTGGTATTGCCGCAGGATCAGCGGCTA-- 16663
Query 19551 TATGGATATATGAATGGACGTATTCCATACAATGGCTTGGTGGACACTTACGTAAATATT 19610
|||| || |||||| || |||||| | || |||| || ||| | || ||
Sbjct 16664 TATGCTTACATGAATTCTCGCATTCCAGCCGGGGGTCTGGTAGAGGATTATATCAACATA 16723
Query 19611 GGAGCCAGGTGGTCTTTGGATGTCATGGATAATGTTAATCCATTCAACCACCACCGCAAC 19670
||| |||||||||| | ||||| ||||| | ||||||||||| || || ||| | ||
Sbjct 16724 GGAACCAGGTGGTCAATAGATGTGATGGACACGGTTAATCCATTTAATCATCACAGAAAT 16783
Query 19671 GCCGGGCTTCGCTACAGGTCTCAGCTGTTGGGTAATGGCAGATATTGTGAGTTCCACATT 19730
| || | | |||||||||||||| || || ||||| | ||| | || || |||
Sbjct 16784 ACTGGTTTGAGGTACAGGTCTCAGCTATTAGGAAATGGTCGCTATGCTTCCTTTCATATT 16843
Query 19731 CAGGTGCCGCAGAAGTTCTTTGCAATCAAGAATCTGCTGCTTTTGCCTGGAACCTATACT 19790
||||| ||||| ||||| |||||| | || | | |||| || | || ||| | || | |
Sbjct 16844 CAGGTTCCGCAAAAGTTTTTTGCACTTAAAAGTTTGCTTCTGCTACCGGGATCGTACAGT 16903
Query 19791 TACGAGTGGTCTTTCAGAAAGGATGTGAACATGATCCTGCAAAGTTCTCTGGGAAATGAC 19850
||||| |||||||| ||||| ||||| |||||||| |||| ||| |||| || |||||
Sbjct 16904 TACGAATGGTCTTTTAGAAAAGATGTAAACATGATTTTGCAGAGTACTCTTGGCAATGAT 16963
Query 19851 CTGCGTGTCGATGGGGCT--AATATCATCATTAAGAGTGTGAACTTGTATGCCAGCTTCT 19908
||| | | || || || | || ||| || | || | | | | | ||| | ||||
Sbjct 16964 CTGAGGGAGGACGGAGCGTCAGTAACAT--TTGACAGCATTAGCCTATTTGCTACTTTCT 17021
Query 19909 TTCCCATGTCCCACAACACCGCTTCTACCCTGGAAGCCATGCTGCGTAACGATACCAATG 19968
|||| ||||| || ||||| |||||||| |||||| | ||||| || || || || |
Sbjct 17022 TTCCGATGTCTCATAACACTGCTTCTACTCTGGAAACTATGCTTCGCAATGAGGTTAACG 17081
Query 19969 ATCAGTCTTTCACCGACTACCT---CAGCGCTGCCAACATGCTGTTCCCCATCCCTGCCA 20025
||||||| ||| |||||| || ||||| | |||||||| | | || ||| |
Sbjct 17082 ATCAGTCCTTCGGCGACTATCTTTCCAGCGTT---AACATGCTTTATGCTATTCCTCCGC 17138
Query 20026 ATGCTACTCAGGTTCCCATTTCAATCCCTGCACGGAACTGGGCCGCCTTTAGAGGTTGGA 20085
|| || || || || || || || ||| |||| ||||| |||||||||||||||
Sbjct 17139 ATCAAACAACAGTGCCTATCTCTATTCCAGCAAGGAATTGGGCGGCCTTTAGAGGTTGGG 17198
Query 20086 GCTTTACCCGCCTGAAGCAGCACGAGACCCCGGCTTTGGGATCACCCTTTGATCCCTACT 20145
||||| | || || || || || || || | | || || | ||||| || ||||
Sbjct 17199 CATTTACTAGACTAAAACAACAGGAAACACCAACCATTGGCTCTGCATTTGACCCATACT 17258
Query 20146 TCACCTATTCCGGATCAATTCCTTATCTGGATGGAACTTTCTACCTAAATCATACTTTTA 20205
| | || || || ||||| || ||| ||||| || || || || ||| ||| | |
Sbjct 17259 TTAGGTACTCGGGCTCAATCCCGTATTGGGATGCGACCTTTTATTTATCTCACACTATCA 17318
Query 20206 GGAGAGTTTCCATTCAGTTTGATTCATCTGTGAGCTGGCCGGGTAATGATAGGCTGTTGA 20265
| | || |||| ||||||||||| || || || ||||| || ||||| || || || |
Sbjct 17319 GAAAGGTGGCCATACAGTTTGATTCTTCAGTAAGTTGGCCTGGAAATGACAGACTTTTAA 17378
Query 20266 GCCCCAACGAGTTTGAGATCAAGCGTGCAGTGGACGGTGAAGGTTACAGCATCGCTCAAA 20325
|| || || ||| | || || | | ||||||| ||||| || | || | |||| |
Sbjct 17379 TACCTAATGAATTTCACATAAAAAGAGAGGTGGACGCGGAAGGCTATAACACCTCTCAGA 17438
Query 20326 GTAATATGACCAAAGACTGGTTCCTGATCCAGATGCTGGCCCACTACAACATCGGCTATC 20385
| | || || || || |||| |||| || ||||| || |||||||| ||||| || |
Sbjct 17439 GCATAATTACTAAGGATTGGTATATGATTCAAATGCTCGCTCACTACAATATCGGATACC 17498
Query 20386 AGGGTTACCATCTGCCGGATGCTTACAAAGACAGATTCTACTCTTTCCTGCACAATTTTG 20445
| |||| || || || | ||| ||||| ||||| || || || | |||||||
Sbjct 17499 AAGGTTTTCACCTACCCACAGATTATAAAGATAGATTGTATTCCTTTTTAAGAAATTTTG 17558
Query 20446 TACCTATGACACGCCAGGTAATTGATGAAAATA--ACGTCACCAATTACCAAGCTGTAAA 20503
||| ||| | || || | ||| || ||| | || || ||| | ||
Sbjct 17559 AACCCATGTGTAGACAAGTTGTGGATCCTGGTAAGACGGAA--AAATATCAACCCGTTGC 17616
Query 20504 CATTTTGAACCAATTTAACAACAGCGGGTTCGTTGGA----TTTATGAATCCAGTGGCCA 20559
|| | || ||| || | |||| || | ||||| | || |||
Sbjct 17617 TCTTAAATATCAGCATAATAA-TTCAGGTT--TTAAAAACCATTATGGACCCTTTGG--- 17670
Query 20560 CCCGCGAGGGACACCCCTATCCGGCTAACTGGCCCTACCCGCTCATCGGACCCAATGCCT 20619
|| | || || || ||||| ||||||||| | ||||||||||||| | ||
Sbjct 17671 -GCGACAAGGCCATCCTTATCCCTGTAACTGGCCTTTCCCGCTCATCGGAGAACAGGCAG 17729
Query 20620 ACGCCACCGTCACCCAGCGCAAGTTCCTCTGCGATCGGGTGCTCTGGCGCATACCCTTCT 20679
||| | || ||| | || || | || || | || ||| | || || ||||
Sbjct 17730 GTAAAACCATTACTCAGAGAAAATTTTTATGTGACAGAACACTGTGGAGGATTCCGTTCT 17789
Query 20680 CCTCCAACTTCATGTCCATGGGCACGCTCACCGACCTGGGCCAGAACCTGCTGTACGCTA 20739
|||||||||| ||||||||||| || || || || ||||| || || |||| || || |
Sbjct 17790 CCTCCAACTTTATGTCCATGGGAACACTAACAGATCTGGGACAAAATTTGCTATATGCAA 17849
Query 20740 ATGCCGCACACGCGCTCGACATGATCTTCGAAGTCGACCCCATTGACGAGCCCACCCTGC 20799
|| | || || || | ||||||| ||||||| || | || || || || || |
Sbjct 17850 ATTCAGCTCATGCTTTAGACATGACAGTCGAAGTAGATTCAATGGAGGAACCAACTTATC 17909
Query 20800 TCTATG-TTCTCTTCGAAGTCTTTGACGTCTGCCGCGTGCACCAGCCTCACCGGGGCGTT 20858
|| ||| | || || ||||| |||||| | ||| | ||||| |||||||| || || ||
Sbjct 17910 TC-ATGATGCTATTTGAAGTATTTGACATGTGCAGAGTGCATCAGCCTCAACGAGGTGTC 17968
Query 20859 ATCGAAACCGTCTACCTCCGAACCCCCTTCAGCGCGGGTAACGCCACCACATAA 20912
|| ||| | || || |||||||||| || ||||||||| | ||||||
Sbjct 17969 ATAGAAGTTATTTATCTAAGAACCCCCTTTTCGGCAGGTAACGCCGCAACATAA 18022
Score = 190 bits (210), Expect = 5e-44
Identities = 482/728 (66%), Gaps = 4/728 (1%)
Strand=Plus/Plus
Query 4126 ATACATCCATTGCATACTATCATTCTCGGGGCAGGTGTTGTAGATGATCCAGTCATAGTG 4185
|||||||||||| ||| | | | ||| |||| |||| | |||||| |||||
Sbjct 3594 ATACATCCATTGTTGACTTTGACACGTAGGGGTGGTGGTGTACACGATCCAATCATAAGA 3653
Query 4186 GGAGTTTTGGGAGTAGTAGTTAAAGATATCTTTCAAGAGGAGGGAGATGGCAAGGGGGAG 4245
|||| | ||| | |||| |||||||||||| || | |||| ||| || | ||| ||
Sbjct 3654 TGAGTGTAAGGAATGGTAGGCAAAGATATCTTTTAATAATAGGGTGATTGCTAAGGGTAG 3713
Query 4246 ACCCTTGGTGTAAGTGTTAACAAAGCGGGTGAGCTGGGTGGGTTGCATGCGGGGGCTGAT 4305
|| || || ||||| |||| ||| | | | ||||| | ||||||||| |||||| |
Sbjct 3714 GCCTTTAGTATAAGTATTAATAAATCTGTTTAGCTGAGCGGGTTGCATTTTGGGGCTCAG 3773
Query 4306 GAGGTGGAGTTTGGCCTGGATTTTGAGGTTGGAGATGTTGCCTCCCTGGTCTTTGCGGGG 4365
| || ||| || || ||||| || |||| || || || | ||||| || ||
Sbjct 3774 TATATGATATTTAGCTTGAATTTTTAGTGTGGATATATTTCCACTTAAATCTTTTCGCGG 3833
Query 4366 GTTCATATTATGCAAGACCACCATGACACAGTAGCCAGTACACTTGGGAAACTTGTCATG 4425
|||||||||||| || ||||| | | | |||| || | ||| |||| | || |||
Sbjct 3834 GTTCATATTATGTAATACCACAAACAGATAGTACCCGCTGCACGAGGGATATTTTTCAAA 3893
Query 4426 CAACTTGGAGGGGAAGGCATGGAAGAATTTAGCCACCCCCTTGTGCCTGCCCAGCTCTTC 4485
| || || || || || || || ||||| || | ||| || || | | |||
Sbjct 3894 TAGTTTTGAAGGAAACGCGTGAAAAAATTTTGCAATAGGGCTGTTCCCTCCTAAATTTTC 3953
Query 4486 CATGCACTCATCCATGATAATGGCAATGGGCCCCTTGGAGGCAGCTTGGGCAAAGACATT 4545
||| |||||||| ||||||||||| ||||| || | ||| || || |||| |||
Sbjct 3954 CATACACTCATCAATGATAATGGCTATGGGTCCGGTTTTGGCCGCCTGTACAAATTTATT 4013
Query 4546 CTGGGGGTGGGTGACATCATAATTATAGTCTTGCAAGAGCTCATCATAGGACATTTTTAC 4605
| || || | ||||||||| | || | ||||| || | || || | || |
Sbjct 4014 ATTTGGATGCCCTAAATCATAATTTTCTTCGTTTAAGAGATCCTTGTACGATAGTTGCGC 4073
Query 4606 AAATTTGGGCATGAGGGTCCCGCTCTGGGGGACGATGGTGTCA-TCGGGCCCGGGTTGGT 4664
||| || | | || || |||| || || || || || ||| ||| |
Sbjct 4074 GAATCGAGGAGTTAATGTACCAGTCTGAGGCACAATTTCACCATTCTTTCCCATGTT-AT 4132
Query 4665 AGTTTCCCTCACAGATCTGGGTCTCCCAAGACATGATCTCTTGAGGGGGGATCATGTCCA 4724
|||||||||| || || | | ||| ||||| || || || ||||||||||||||
Sbjct 4133 AGTTTCCCTCTATAATTTGTGCTTTCCATGACATAATTTCCTGTGGGGGGATCATGTCTG 4192
Query 4725 CCTGGGGGGCGATAAAGAAGACGGTCTCGGGGGCGGG-TGTGATGAGGTGGGCAGACATG 4783
| | |||| | |||||| | ||||| |||||||| | | || | ||| | |||||
Sbjct 4193 CATAAGGGGTTACAAAGAATATAGTCTCCGGGGCGGGATTTAATAATTTGGAC-GACATA 4251
Query 4784 AGGTTGCGAAGCAACTGGGACTTGCCCGAGCCGGTGGGCCCGTAGATGACCCCGATGACG 4843
|| || | | || ||||| || || || || || || || |||||||| || ||
Sbjct 4252 AGATTTCTCAATAATTGGGATTTTCCACTACCAGTTGGACCATATATGACCCCAATCACC 4311
Query 4844 GGCTGGGT 4851
|| || ||
Sbjct 4312 GGTTGAGT 4319
Score = 170 bits (188), Expect = 5e-38
Identities = 270/387 (70%), Gaps = 0/387 (0%)
Strand=Plus/Plus
Query 18159 CCGAAGATGGCCACCCCTTCGATGCTGCCGCAATGGTCCTACATGCACATCGCCGGTCAG 18218
|||||||||||||| || |||||||| ||||||||||| ||| | || ||||| || ||
Sbjct 15308 CCGAAGATGGCCACTCCCTCGATGCTCCCGCAATGGTCTTACTTACATATCGCAGGACAA 15367
Query 18219 GATGCGTCAGAGTACCTGTCGCCCGGCTTGGTGCAGTTCGCCCGGGCCACGGAAACGTAC 18278
||||| ||||| || | || || | ||| || || || | || || |||||||||
Sbjct 15368 GATGCTTCAGAATATTTATCTCCTGCGTTGTGTCAATTTGCAAGCGCAACCGAAACGTAC 15427
Query 18279 TTTGCCCTGGGCAACAAGTTTAGGAACCCCACGGTGGCTCCCACTCACGATGTGACCACA 18338
||| |||| || | || ||||| || || ||||| || || || |||||||| || ||
Sbjct 15428 TTTTCCCTAAGCGATAAATTTAGAAATCCGACGGTTGCGCCGACACACGATGTAACTACG 15487
Query 18339 GAACGTTCTCAGCGACTGCAGTTGCGCTTCGTGCCCATCAACCAGGAGGACACGCAGTAC 18398
||| | || ||| |||| || || | || || || | | || || || |||||
Sbjct 15488 GAAAGATCGCAGAGACTACAATTAAGATTTGTTCCAGCGGAAAAAGAAGATACACAGTAT 15547
Query 18399 ACTTACAAGACCCGCTTTCAGCTGGCCGTGGGTGACAACCGGGTGCTGGACATGGCCAGC 18458
|||| || |||| ||||| || |||| ||||| ||| | | | || ||| ||
Sbjct 15548 ACTTTTAAAGCCCGATTTCAACTCACCGTCGGTGATAACAGAATATTAGATTTGGGTAGT 15607
Query 18459 ACCTACTTTGACATACGCGGAGTGCTGGACCGCGGCCCCAGCTTCAAACCCTACAGCGGC 18518
| || ||||| ||| ||| | | ||| | || ||| || ||||| ||||| |||
Sbjct 15608 AGTTATTTTGATATAAAGGGAAAGATAGACAGAGGTCCCTCTTTTAAACCTTACAGTGGC 15667
Query 18519 ACGGCTTACAACTGCATGGCTCCGAAA 18545
|| || ||||| | | || ||||||
Sbjct 15668 ACAGCATACAATAACCTTGCCCCGAAA 15694
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 119964655382988
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