Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dipodomys_20ordii_20[refseq_20GCF_5F000151885.1_202014-12-12] 65,193 sequences; 2,236,368,823 total letters Query= NC_029899.1 Length=37556 Score E Sequences producing significant alignments: (Bits) Value seq4931 500 2e-137 >seq4931 Length=27746 Score = 500 bits (554), Expect = 2e-137 Identities = 1271/1914 (66%), Gaps = 51/1914 (3%) Strand=Plus/Plus Query 19014 CCAAATCGACCAAACTACATTGGCTTCAGAGACAATTTTATTGGTCTAATGTATTACAAC 19073 ||||| | ||||| || || || || || || || ||||| || |||||| ||| ||| Sbjct 16145 CCAAACAGGCCAAATTATATAGGTTTTAGGGATAACTTTATCGGGTTAATGTTTTATAAC 16204 Query 19074 AGCAATGGTAATTTGGGGGTGCTTGCTGGTCAGTCTTCACAGTTGAATGCTGTTGTGGAT 19133 || ||| | |||||||| || | || ||||| || |||||| | |||||||| | || Sbjct 16205 AGTAATAGCAATTTGGGTGTATTAGCCGGTCAATCGTCACAGCTTAATGCTGTCATCGAC 16264 Query 19134 TTGCAAGACAGAAACACCGAACTGTCATATCAATTAATGCTTGACAGTTTAACTGACAGA 19193 | ||||||||||| || ||| |||||||||| | ||| | || | |||| || ||| Sbjct 16265 CTTCAAGACAGAAATACAGAATTGTCATATCAGCTTATGTTAGATAATTTACACGATAGA 16324 Query 19194 TCTAGGTATTTTAGTGTCTGGAATCAAGCAGTTGACAGTTATGACATTGATGTCAGAGTG 19253 || | |||| || | ||||||||||| || || ||||| || ||| || | Sbjct 16325 ACTCGATATTACAGCTTGTGGAATCAAGCCGTGGATTCATATGATCCAGAGGTCCGAATC 16384 Query 19254 ATTGAAAACAATGGTGTTGAAGATGAAATGCCGAATTACTGCTTTCCAATTTCGGGATTC 19313 || || || | ||| || ||||| ||| | || ||||| |||||||| | || |||| Sbjct 16385 ATAGACAATATTGGAGTAGAAGACGAACTTCCAAATTATTGCTTTCCGTTATCTGGAT-- 16442 Query 19314 AGCACTCCAAGTAGTAAAATCAATGCCGTAAAGTATGATACAGGGACTAATGCATGGGTT 19373 | |||| | | | | | ||| || || | || |||| | ||| | Sbjct 16443 -GTTCTCCTATTGATTATAC---TGCTGTTAATCAAAAT----GGACAA--GCAATCAAT 16492 Query 19374 ACAGATACTAGCTTTGTCCAAAGTCCATTTATTGATCTTGGAAATCTAGA-TGCAATGGA 19432 | | | || | || || || |||| | |||||| | || |||| |||| Sbjct 16493 A---ACAATAACCCTGCGCAGGTTC---TTATAGGCAAAGGAAATGTTGAATGCA-TGGA 16545 Query 19433 AATTAATCTAACAGCTAATCTGTGGCGAAGCTTTTTGTATTCAAATGTTGCTCTGTATTT 19492 ||| || || | || || |||||| | ||| ||||||| ||| | || |||||| | Sbjct 16546 AATCAACATAGCGGCCAACCTGTGGAAGAATTTTCTGTATTCTAATATCGCGCTGTATCT 16605 Query 19493 GCCAGATAAGTACAAATTCACTCCTCAAAACATCACGCTGCCTACCAATA--CTAATACG 19550 ||| ||||| | ||| |||||| ||| | |||| || | || Sbjct 16606 GCCCGATAACTTTAAAACCACTCCCGCAAATGTGGTATTGCCGCAGGATCAGCGGCTA-- 16663 Query 19551 TATGGATATATGAATGGACGTATTCCATACAATGGCTTGGTGGACACTTACGTAAATATT 19610 |||| || |||||| || |||||| | || |||| || ||| | || || Sbjct 16664 TATGCTTACATGAATTCTCGCATTCCAGCCGGGGGTCTGGTAGAGGATTATATCAACATA 16723 Query 19611 GGAGCCAGGTGGTCTTTGGATGTCATGGATAATGTTAATCCATTCAACCACCACCGCAAC 19670 ||| |||||||||| | ||||| ||||| | ||||||||||| || || ||| | || Sbjct 16724 GGAACCAGGTGGTCAATAGATGTGATGGACACGGTTAATCCATTTAATCATCACAGAAAT 16783 Query 19671 GCCGGGCTTCGCTACAGGTCTCAGCTGTTGGGTAATGGCAGATATTGTGAGTTCCACATT 19730 | || | | |||||||||||||| || || ||||| | ||| | || || ||| Sbjct 16784 ACTGGTTTGAGGTACAGGTCTCAGCTATTAGGAAATGGTCGCTATGCTTCCTTTCATATT 16843 Query 19731 CAGGTGCCGCAGAAGTTCTTTGCAATCAAGAATCTGCTGCTTTTGCCTGGAACCTATACT 19790 ||||| ||||| ||||| |||||| | || | | |||| || | || ||| | || | | Sbjct 16844 CAGGTTCCGCAAAAGTTTTTTGCACTTAAAAGTTTGCTTCTGCTACCGGGATCGTACAGT 16903 Query 19791 TACGAGTGGTCTTTCAGAAAGGATGTGAACATGATCCTGCAAAGTTCTCTGGGAAATGAC 19850 ||||| |||||||| ||||| ||||| |||||||| |||| ||| |||| || ||||| Sbjct 16904 TACGAATGGTCTTTTAGAAAAGATGTAAACATGATTTTGCAGAGTACTCTTGGCAATGAT 16963 Query 19851 CTGCGTGTCGATGGGGCT--AATATCATCATTAAGAGTGTGAACTTGTATGCCAGCTTCT 19908 ||| | | || || || | || ||| || | || | | | | | ||| | |||| Sbjct 16964 CTGAGGGAGGACGGAGCGTCAGTAACAT--TTGACAGCATTAGCCTATTTGCTACTTTCT 17021 Query 19909 TTCCCATGTCCCACAACACCGCTTCTACCCTGGAAGCCATGCTGCGTAACGATACCAATG 19968 |||| ||||| || ||||| |||||||| |||||| | ||||| || || || || | Sbjct 17022 TTCCGATGTCTCATAACACTGCTTCTACTCTGGAAACTATGCTTCGCAATGAGGTTAACG 17081 Query 19969 ATCAGTCTTTCACCGACTACCT---CAGCGCTGCCAACATGCTGTTCCCCATCCCTGCCA 20025 ||||||| ||| |||||| || ||||| | |||||||| | | || ||| | Sbjct 17082 ATCAGTCCTTCGGCGACTATCTTTCCAGCGTT---AACATGCTTTATGCTATTCCTCCGC 17138 Query 20026 ATGCTACTCAGGTTCCCATTTCAATCCCTGCACGGAACTGGGCCGCCTTTAGAGGTTGGA 20085 || || || || || || || || ||| |||| ||||| ||||||||||||||| Sbjct 17139 ATCAAACAACAGTGCCTATCTCTATTCCAGCAAGGAATTGGGCGGCCTTTAGAGGTTGGG 17198 Query 20086 GCTTTACCCGCCTGAAGCAGCACGAGACCCCGGCTTTGGGATCACCCTTTGATCCCTACT 20145 ||||| | || || || || || || || | | || || | ||||| || |||| Sbjct 17199 CATTTACTAGACTAAAACAACAGGAAACACCAACCATTGGCTCTGCATTTGACCCATACT 17258 Query 20146 TCACCTATTCCGGATCAATTCCTTATCTGGATGGAACTTTCTACCTAAATCATACTTTTA 20205 | | || || || ||||| || ||| ||||| || || || || ||| ||| | | Sbjct 17259 TTAGGTACTCGGGCTCAATCCCGTATTGGGATGCGACCTTTTATTTATCTCACACTATCA 17318 Query 20206 GGAGAGTTTCCATTCAGTTTGATTCATCTGTGAGCTGGCCGGGTAATGATAGGCTGTTGA 20265 | | || |||| ||||||||||| || || || ||||| || ||||| || || || | Sbjct 17319 GAAAGGTGGCCATACAGTTTGATTCTTCAGTAAGTTGGCCTGGAAATGACAGACTTTTAA 17378 Query 20266 GCCCCAACGAGTTTGAGATCAAGCGTGCAGTGGACGGTGAAGGTTACAGCATCGCTCAAA 20325 || || || ||| | || || | | ||||||| ||||| || | || | |||| | Sbjct 17379 TACCTAATGAATTTCACATAAAAAGAGAGGTGGACGCGGAAGGCTATAACACCTCTCAGA 17438 Query 20326 GTAATATGACCAAAGACTGGTTCCTGATCCAGATGCTGGCCCACTACAACATCGGCTATC 20385 | | || || || || |||| |||| || ||||| || |||||||| ||||| || | Sbjct 17439 GCATAATTACTAAGGATTGGTATATGATTCAAATGCTCGCTCACTACAATATCGGATACC 17498 Query 20386 AGGGTTACCATCTGCCGGATGCTTACAAAGACAGATTCTACTCTTTCCTGCACAATTTTG 20445 | |||| || || || | ||| ||||| ||||| || || || | ||||||| Sbjct 17499 AAGGTTTTCACCTACCCACAGATTATAAAGATAGATTGTATTCCTTTTTAAGAAATTTTG 17558 Query 20446 TACCTATGACACGCCAGGTAATTGATGAAAATA--ACGTCACCAATTACCAAGCTGTAAA 20503 ||| ||| | || || | ||| || ||| | || || ||| | || Sbjct 17559 AACCCATGTGTAGACAAGTTGTGGATCCTGGTAAGACGGAA--AAATATCAACCCGTTGC 17616 Query 20504 CATTTTGAACCAATTTAACAACAGCGGGTTCGTTGGA----TTTATGAATCCAGTGGCCA 20559 || | || ||| || | |||| || | ||||| | || ||| Sbjct 17617 TCTTAAATATCAGCATAATAA-TTCAGGTT--TTAAAAACCATTATGGACCCTTTGG--- 17670 Query 20560 CCCGCGAGGGACACCCCTATCCGGCTAACTGGCCCTACCCGCTCATCGGACCCAATGCCT 20619 || | || || || ||||| ||||||||| | ||||||||||||| | || Sbjct 17671 -GCGACAAGGCCATCCTTATCCCTGTAACTGGCCTTTCCCGCTCATCGGAGAACAGGCAG 17729 Query 20620 ACGCCACCGTCACCCAGCGCAAGTTCCTCTGCGATCGGGTGCTCTGGCGCATACCCTTCT 20679 ||| | || ||| | || || | || || | || ||| | || || |||| Sbjct 17730 GTAAAACCATTACTCAGAGAAAATTTTTATGTGACAGAACACTGTGGAGGATTCCGTTCT 17789 Query 20680 CCTCCAACTTCATGTCCATGGGCACGCTCACCGACCTGGGCCAGAACCTGCTGTACGCTA 20739 |||||||||| ||||||||||| || || || || ||||| || || |||| || || | Sbjct 17790 CCTCCAACTTTATGTCCATGGGAACACTAACAGATCTGGGACAAAATTTGCTATATGCAA 17849 Query 20740 ATGCCGCACACGCGCTCGACATGATCTTCGAAGTCGACCCCATTGACGAGCCCACCCTGC 20799 || | || || || | ||||||| ||||||| || | || || || || || | Sbjct 17850 ATTCAGCTCATGCTTTAGACATGACAGTCGAAGTAGATTCAATGGAGGAACCAACTTATC 17909 Query 20800 TCTATG-TTCTCTTCGAAGTCTTTGACGTCTGCCGCGTGCACCAGCCTCACCGGGGCGTT 20858 || ||| | || || ||||| |||||| | ||| | ||||| |||||||| || || || Sbjct 17910 TC-ATGATGCTATTTGAAGTATTTGACATGTGCAGAGTGCATCAGCCTCAACGAGGTGTC 17968 Query 20859 ATCGAAACCGTCTACCTCCGAACCCCCTTCAGCGCGGGTAACGCCACCACATAA 20912 || ||| | || || |||||||||| || ||||||||| | |||||| Sbjct 17969 ATAGAAGTTATTTATCTAAGAACCCCCTTTTCGGCAGGTAACGCCGCAACATAA 18022 Score = 190 bits (210), Expect = 5e-44 Identities = 482/728 (66%), Gaps = 4/728 (1%) Strand=Plus/Plus Query 4126 ATACATCCATTGCATACTATCATTCTCGGGGCAGGTGTTGTAGATGATCCAGTCATAGTG 4185 |||||||||||| ||| | | | ||| |||| |||| | |||||| ||||| Sbjct 3594 ATACATCCATTGTTGACTTTGACACGTAGGGGTGGTGGTGTACACGATCCAATCATAAGA 3653 Query 4186 GGAGTTTTGGGAGTAGTAGTTAAAGATATCTTTCAAGAGGAGGGAGATGGCAAGGGGGAG 4245 |||| | ||| | |||| |||||||||||| || | |||| ||| || | ||| || Sbjct 3654 TGAGTGTAAGGAATGGTAGGCAAAGATATCTTTTAATAATAGGGTGATTGCTAAGGGTAG 3713 Query 4246 ACCCTTGGTGTAAGTGTTAACAAAGCGGGTGAGCTGGGTGGGTTGCATGCGGGGGCTGAT 4305 || || || ||||| |||| ||| | | | ||||| | ||||||||| |||||| | Sbjct 3714 GCCTTTAGTATAAGTATTAATAAATCTGTTTAGCTGAGCGGGTTGCATTTTGGGGCTCAG 3773 Query 4306 GAGGTGGAGTTTGGCCTGGATTTTGAGGTTGGAGATGTTGCCTCCCTGGTCTTTGCGGGG 4365 | || ||| || || ||||| || |||| || || || | ||||| || || Sbjct 3774 TATATGATATTTAGCTTGAATTTTTAGTGTGGATATATTTCCACTTAAATCTTTTCGCGG 3833 Query 4366 GTTCATATTATGCAAGACCACCATGACACAGTAGCCAGTACACTTGGGAAACTTGTCATG 4425 |||||||||||| || ||||| | | | |||| || | ||| |||| | || ||| Sbjct 3834 GTTCATATTATGTAATACCACAAACAGATAGTACCCGCTGCACGAGGGATATTTTTCAAA 3893 Query 4426 CAACTTGGAGGGGAAGGCATGGAAGAATTTAGCCACCCCCTTGTGCCTGCCCAGCTCTTC 4485 | || || || || || || || ||||| || | ||| || || | | ||| Sbjct 3894 TAGTTTTGAAGGAAACGCGTGAAAAAATTTTGCAATAGGGCTGTTCCCTCCTAAATTTTC 3953 Query 4486 CATGCACTCATCCATGATAATGGCAATGGGCCCCTTGGAGGCAGCTTGGGCAAAGACATT 4545 ||| |||||||| ||||||||||| ||||| || | ||| || || |||| ||| Sbjct 3954 CATACACTCATCAATGATAATGGCTATGGGTCCGGTTTTGGCCGCCTGTACAAATTTATT 4013 Query 4546 CTGGGGGTGGGTGACATCATAATTATAGTCTTGCAAGAGCTCATCATAGGACATTTTTAC 4605 | || || | ||||||||| | || | ||||| || | || || | || | Sbjct 4014 ATTTGGATGCCCTAAATCATAATTTTCTTCGTTTAAGAGATCCTTGTACGATAGTTGCGC 4073 Query 4606 AAATTTGGGCATGAGGGTCCCGCTCTGGGGGACGATGGTGTCA-TCGGGCCCGGGTTGGT 4664 ||| || | | || || |||| || || || || || ||| ||| | Sbjct 4074 GAATCGAGGAGTTAATGTACCAGTCTGAGGCACAATTTCACCATTCTTTCCCATGTT-AT 4132 Query 4665 AGTTTCCCTCACAGATCTGGGTCTCCCAAGACATGATCTCTTGAGGGGGGATCATGTCCA 4724 |||||||||| || || | | ||| ||||| || || || |||||||||||||| Sbjct 4133 AGTTTCCCTCTATAATTTGTGCTTTCCATGACATAATTTCCTGTGGGGGGATCATGTCTG 4192 Query 4725 CCTGGGGGGCGATAAAGAAGACGGTCTCGGGGGCGGG-TGTGATGAGGTGGGCAGACATG 4783 | | |||| | |||||| | ||||| |||||||| | | || | ||| | ||||| Sbjct 4193 CATAAGGGGTTACAAAGAATATAGTCTCCGGGGCGGGATTTAATAATTTGGAC-GACATA 4251 Query 4784 AGGTTGCGAAGCAACTGGGACTTGCCCGAGCCGGTGGGCCCGTAGATGACCCCGATGACG 4843 || || | | || ||||| || || || || || || || |||||||| || || Sbjct 4252 AGATTTCTCAATAATTGGGATTTTCCACTACCAGTTGGACCATATATGACCCCAATCACC 4311 Query 4844 GGCTGGGT 4851 || || || Sbjct 4312 GGTTGAGT 4319 Score = 170 bits (188), Expect = 5e-38 Identities = 270/387 (70%), Gaps = 0/387 (0%) Strand=Plus/Plus Query 18159 CCGAAGATGGCCACCCCTTCGATGCTGCCGCAATGGTCCTACATGCACATCGCCGGTCAG 18218 |||||||||||||| || |||||||| ||||||||||| ||| | || ||||| || || Sbjct 15308 CCGAAGATGGCCACTCCCTCGATGCTCCCGCAATGGTCTTACTTACATATCGCAGGACAA 15367 Query 18219 GATGCGTCAGAGTACCTGTCGCCCGGCTTGGTGCAGTTCGCCCGGGCCACGGAAACGTAC 18278 ||||| ||||| || | || || | ||| || || || | || || ||||||||| Sbjct 15368 GATGCTTCAGAATATTTATCTCCTGCGTTGTGTCAATTTGCAAGCGCAACCGAAACGTAC 15427 Query 18279 TTTGCCCTGGGCAACAAGTTTAGGAACCCCACGGTGGCTCCCACTCACGATGTGACCACA 18338 ||| |||| || | || ||||| || || ||||| || || || |||||||| || || Sbjct 15428 TTTTCCCTAAGCGATAAATTTAGAAATCCGACGGTTGCGCCGACACACGATGTAACTACG 15487 Query 18339 GAACGTTCTCAGCGACTGCAGTTGCGCTTCGTGCCCATCAACCAGGAGGACACGCAGTAC 18398 ||| | || ||| |||| || || | || || || | | || || || ||||| Sbjct 15488 GAAAGATCGCAGAGACTACAATTAAGATTTGTTCCAGCGGAAAAAGAAGATACACAGTAT 15547 Query 18399 ACTTACAAGACCCGCTTTCAGCTGGCCGTGGGTGACAACCGGGTGCTGGACATGGCCAGC 18458 |||| || |||| ||||| || |||| ||||| ||| | | | || ||| || Sbjct 15548 ACTTTTAAAGCCCGATTTCAACTCACCGTCGGTGATAACAGAATATTAGATTTGGGTAGT 15607 Query 18459 ACCTACTTTGACATACGCGGAGTGCTGGACCGCGGCCCCAGCTTCAAACCCTACAGCGGC 18518 | || ||||| ||| ||| | | ||| | || ||| || ||||| ||||| ||| Sbjct 15608 AGTTATTTTGATATAAAGGGAAAGATAGACAGAGGTCCCTCTTTTAAACCTTACAGTGGC 15667 Query 18519 ACGGCTTACAACTGCATGGCTCCGAAA 18545 || || ||||| | | || |||||| Sbjct 15668 ACAGCATACAATAACCTTGCCCCGAAA 15694 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 119964655382988