Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dipodomys_20ordii_20[refseq_20GCF_5F000151885.1_202014-12-12] 65,193 sequences; 2,236,368,823 total letters Query= NC_029902.1 Length=38073 Score E Sequences producing significant alignments: (Bits) Value seq4931 506 5e-139 >seq4931 Length=27746 Score = 506 bits (560), Expect = 5e-139 Identities = 1272/1913 (66%), Gaps = 55/1913 (3%) Strand=Plus/Plus Query 19035 CCTAATAGACCAAACTACATTGGCTTCAGAGATAATTTTATCGGATTAATGTACTACAAC 19094 || || || ||||| || || || || || ||||| |||||||| ||||||| || ||| Sbjct 16145 CCAAACAGGCCAAATTATATAGGTTTTAGGGATAACTTTATCGGGTTAATGTTTTATAAC 16204 Query 19095 AGTAATGGTAATTTGGGTGTTTTGGCCGGCCAGGCTTCCCAGTTGAATGCAGTGGTTGAT 19154 |||||| | ||||||||||| || ||||| || | || ||| | ||||| || | || Sbjct 16205 AGTAATAGCAATTTGGGTGTATTAGCCGGTCAATCGTCACAGCTTAATGCTGTCATCGAC 16264 Query 19155 TTACAGGACAGAAATACTGAATTGTCCTATCAACTAATGCTTGATAGTTTGACCGACAGA 19214 | || ||||||||||| |||||||| ||||| || ||| | |||| ||| ||| ||| Sbjct 16265 CTTCAAGACAGAAATACAGAATTGTCATATCAGCTTATGTTAGATAATTTACACGATAGA 16324 Query 19215 TCCAGATACTTTAGTGTTTGGAACCAAGCTGTTGACAGCTATGACATTGATGTTAGAGTG 19274 | |||| | || | ||||| ||||| || || ||||| || || || | Sbjct 16325 ACTCGATATTACAGCTTGTGGAATCAAGCCGTGGATTCATATGATCCAGAGGTCCGAATC 16384 Query 19275 ATTGAAAATAACGGAGTTGAAGACGAGATGCCAAATTATTGCTTTCCTATACCAGCTTTC 19334 || || |||| ||||| |||||||| | ||||||||||||||||| || | | | Sbjct 16385 ATAGACAATATTGGAGTAGAAGACGAACTTCCAAATTATTGCTTTCCGTTATCTGGATGT 16444 Query 19335 AGCAAACCAGCTAAGGAAGTGACAGCTGTTAAGTATCAAAATA-ACTGGGTGGC--TGAT 19391 | ||| || || |||||||| ||||||| || | | | | Sbjct 16445 T------CTCCTATTGATTATACTGCTGTTAA---TCAAAATGGACAAGCAATCAATAAC 16495 Query 19392 ACTGATTATGTGCAAAATCCTTTAATTGATGTGGGCAATCTGGA-TGCGATGGAAATCAA 19450 | | | || ||| || | || | | | ||| | || ||| ||||||||||| Sbjct 16496 AATAACCCTGCGCAGGTTCTTATAGGCAAAG---GAAATGTTGAATGC-ATGGAAATCAA 16551 Query 19451 CCTCTCAGCCAACCTTTGGAGGGGTTTCCTGTATTCCAACGTAGCCCTCTACCTGCCAGA 19510 | | | |||||||| |||| | ||| |||||||| || | || || || ||||| || Sbjct 16552 CATAGCGGCCAACCTGTGGAAGAATTTTCTGTATTCTAATATCGCGCTGTATCTGCCCGA 16611 Query 19511 CAAATACAAGTTCACGCCGCCCAACATCAAGCTGCCTAACAATACCAACACCTAT--GAT 19568 || | || ||| || | || | |||| | || || | |||| | | Sbjct 16612 TAACTTTAAAACCACTCCCGCAAATGTGGTATTGCCGCAGGAT--CAGCGGCTATATGCT 16669 Query 19569 TACATGAATGGCCGCATTCCCTTTAACGGGCTGGTTGATACTTATGTAAACATTGGGGCG 19628 ||||||||| |||||||| || ||||| || |||| | ||||| || | Sbjct 16670 TACATGAATTCTCGCATTCCAGCCGGGGGTCTGGTAGAGGATTATATCAACATAGGAACC 16729 Query 19629 CGGTGGTCCCTGGACGCCATGGACAACGTCAATCCCTTCAACCACCATCGCAATGCCGGT 19688 ||||||| | || | ||||||| || ||||| || || || || | ||| | ||| Sbjct 16730 AGGTGGTCAATAGATGTGATGGACACGGTTAATCCATTTAATCATCACAGAAATACTGGT 16789 Query 19689 CTGCGCTATCGGTCTCAGTTGCTGGGTAACGGCCGCTATGCAGAGTTTCACATTCAGGTG 19748 || | || |||||||| | | || || || |||||||| ||||| |||||||| Sbjct 16790 TTGAGGTACAGGTCTCAGCTATTAGGAAATGGTCGCTATGCTTCCTTTCATATTCAGGTT 16849 Query 19749 CCGCAGAAATTCTTTGCTATCAAGAATCTTCTGCTGCTACCTGGAACCTACACCTACGAG 19808 ||||| || || ||||| | || | | | || |||||||| ||| | |||| ||||| Sbjct 16850 CCGCAAAAGTTTTTTGCACTTAAAAGTTTGCTTCTGCTACCGGGATCGTACAGTTACGAA 16909 Query 19809 TGGTCTTTCAGGAAGGATGTGAACATGATCCTGCAGAGCTCTCTGGGTAATGACCTGCGT 19868 |||||||| || || ||||| |||||||| ||||||| |||| || ||||| ||| | Sbjct 16910 TGGTCTTTTAGAAAAGATGTAAACATGATTTTGCAGAGTACTCTTGGCAATGATCTGAGG 16969 Query 19869 GTCGATGGGGC-TAATATTGTAA---TCAAGAGTGTGAACTTGTATGCCAGCTTTTTCCC 19924 | || || || | | |||| | | || | | | | | ||| | || || || Sbjct 16970 GAGGACGGAGCGTCA----GTAACATTTGACAGCATTAGCCTATTTGCTACTTTCTTTCC 17025 Query 19925 CATGTCCCACAACACCGCTTCTACCCTGGAAGCCATGCTGCGTAACGATACCAATGATCA 19984 ||||| || ||||| |||||||| |||||| | ||||| || || || || ||||| Sbjct 17026 GATGTCTCATAACACTGCTTCTACTCTGGAAACTATGCTTCGCAATGAGGTTAACGATCA 17085 Query 19985 GTCTTTCACTGACTACCT---CAGCGCTGCCAACATGCTGTTTCCCATTCCCGCCAATGC 20041 ||| ||| ||||| || ||||| | |||||||| | | | ||||| | || Sbjct 17086 GTCCTTCGGCGACTATCTTTCCAGCGTT---AACATGCTTTATGCTATTCCTCCGCATCA 17142 Query 20042 CACTCAGGTTCCCATTTCAATCCCTGCACGGAACTGGGCCGCCTTCAGAGGCTGGAGCTT 20101 || || || || || || || ||| |||| ||||| ||||| ||||| ||| || Sbjct 17143 AACAACAGTGCCTATCTCTATTCCAGCAAGGAATTGGGCGGCCTTTAGAGGTTGGGCATT 17202 Query 20102 TACCCGCCTGAAGCAGCACGAGACCCCAGCTTTGGGTTCGCCCTTTGATCCCTACTTTAC 20161 ||| | || || || || || || ||| | | || || | ||||| || ||||||| Sbjct 17203 TACTAGACTAAAACAACAGGAAACACCAACCATTGGCTCTGCATTTGACCCATACTTTAG 17262 Query 20162 CTATTCCGGCTCAATTCCCTATTTGGATGGAACTTTCTACCTGAATCATACTTTCAGGAG 20221 || || |||||||| || |||| ||||| || || || | ||| ||| |||| | Sbjct 17263 GTACTCGGGCTCAATCCCGTATTGGGATGCGACCTTTTATTTATCTCACACTATCAGAAA 17322 Query 20222 AGTTTCCATTCAGTTTGATTCATCTGTGAGCTGGCCGGGTAATGACAGGCTGTTGAGTCC 20281 || |||| ||||||||||| || || || ||||| || |||||||| || || | || Sbjct 17323 GGTGGCCATACAGTTTGATTCTTCAGTAAGTTGGCCTGGAAATGACAGACTTTTAATACC 17382 Query 20282 CAATGAGTTTGAAATCAAGCGCGCTGTAGATGGGGAGGGTTACAGCATTGCTCAGAGTAA 20341 ||||| ||| | || || | | || || | ||| || || | || ||||||| | Sbjct 17383 TAATGAATTTCACATAAAAAGAGAGGTGGACGCGGAAGGCTATAACACCTCTCAGAGCAT 17442 Query 20342 CATGACCAAAGATTGGTTCCTGATCCAGATGCTGGCGCATTATAATATTGGCTACCAGGG 20401 || || || ||||||| |||| || ||||| || || || ||||| || ||||| || Sbjct 17443 AATTACTAAGGATTGGTATATGATTCAAATGCTCGCTCACTACAATATCGGATACCAAGG 17502 Query 20402 ATACCATCTGCCCGATGCTTACAAGGACAGGCTGTATTCCTTCCTACATAATTTTATCCC 20461 | || || ||| | ||| || || || |||||||||| || |||||| || Sbjct 17503 TTTTCACCTACCCACAGATTATAAAGATAGATTGTATTCCTTTTTAAGAAATTTTGAACC 17562 Query 20462 CATGACCCGCCAGGTAATTGACGAGACCAATGTCAACACCG---GCTACCAGGCCGTTTC 20518 |||| | || | ||| || | || || || | || || ||||| | Sbjct 17563 CATGTGTAGACA---AGTTGTGGATCC---TGGTAAGACGGAAAAATATCAACCCGTTGC 17616 Query 20519 CATCCTTA--ACCAGCATAACAACAGCGGGTTT-ATTGGATTTATGAATCCAGTGGCCAC 20575 || | | | |||||||| || || ||| | ||||| | || ||| Sbjct 17617 --TCTTAAATATCAGCATAATAATTCAGGTTTTAAAAACCATTATGGACCCTTTGG---- 17670 Query 20576 CCGCGAGGGGCACCCCTACCCAGCTAACTGGCCCTACCCGCTCATCGGACCCAATGCCTA 20635 || | || || || || || ||||||||| | ||||||||||||| | || Sbjct 17671 GCGACAAGGCCATCCTTATCCCTGTAACTGGCCTTTCCCGCTCATCGGAGAACAGGCAGG 17730 Query 20636 TGCCACCGTCACCCAGCGCAAGTTCCTCTGCGACCGGGTGCTCTGGCGCATACCCTTCTC 20695 | ||| | || ||| | || || | || ||| | || ||| | || || ||||| Sbjct 17731 TAAAACCATTACTCAGAGAAAATTTTTATGTGACAGAACACTGTGGAGGATTCCGTTCTC 17790 Query 20696 CTCCAACTTCATGTCCATGGGCACGCTCACCGACCTGGGCCAGAACCTGCTGTACGCTAA 20755 ||||||||| ||||||||||| || || || || ||||| || || |||| || || || Sbjct 17791 CTCCAACTTTATGTCCATGGGAACACTAACAGATCTGGGACAAAATTTGCTATATGCAAA 17850 Query 20756 CGCCGCGCACGCGCTTGACATGATCTTCGAAGTCGACCCCATTGACGAGCCCACCCTGCT 20815 | || || || | ||||||| ||||||| || | || || || || || || Sbjct 17851 TTCAGCTCATGCTTTAGACATGACAGTCGAAGTAGATTCAATGGAGGAACCAACTTATCT 17910 Query 20816 CTATG-TTCTCTTCGAAGTCTTTGACGTCTGCCGCGTGCACCAGCCTCACCGGGGCGTTA 20874 | ||| | || || ||||| |||||| | ||| | ||||| |||||||| || || || | Sbjct 17911 C-ATGATGCTATTTGAAGTATTTGACATGTGCAGAGTGCATCAGCCTCAACGAGGTGTCA 17969 Query 20875 TCGAAACCGTCTACCTCCGAACCCCCTTCAGCGCGGGTAACGCCACCACATAA 20927 | ||| | || || |||||||||| || ||||||||| | |||||| Sbjct 17970 TAGAAGTTATTTATCTAAGAACCCCCTTTTCGGCAGGTAACGCCGCAACATAA 18022 Score = 176 bits (194), Expect = 1e-39 Identities = 479/728 (66%), Gaps = 4/728 (1%) Strand=Plus/Plus Query 4129 ATACATCCATTGCATACTATCATTCTCGGGGCAGGTGTTGTAGATGATCCAGTCATAGTG 4188 |||||||||||| ||| | | | ||| |||| |||| | |||||| ||||| Sbjct 3594 ATACATCCATTGTTGACTTTGACACGTAGGGGTGGTGGTGTACACGATCCAATCATAAGA 3653 Query 4189 GGAGTTTTGGGAGTAGTAGTTAAAGATATCTTTCAAGAGGAGGGAGATGGCCAGGGGGAG 4248 |||| | ||| | |||| |||||||||||| || | |||| ||| || | ||| || Sbjct 3654 TGAGTGTAAGGAATGGTAGGCAAAGATATCTTTTAATAATAGGGTGATTGCTAAGGGTAG 3713 Query 4249 ACCCTTGGTGTAAGTGTTAACAAAGCGGGTGAGCTGGGTGGGTTGCATGCGGGGGCTGAT 4308 || || || ||||| |||| ||| | | | ||||| | ||||||||| |||||| | Sbjct 3714 GCCTTTAGTATAAGTATTAATAAATCTGTTTAGCTGAGCGGGTTGCATTTTGGGGCTCAG 3773 Query 4309 GAGGTGGAGTTTGGCCTGGATCTTGAGGTTGGAGATGTTGCCTCCCTGGTCCTTGCGGGG 4368 | || ||| || || || || || |||| || || || | || || || || Sbjct 3774 TATATGATATTTAGCTTGAATTTTTAGTGTGGATATATTTCCACTTAAATCTTTTCGCGG 3833 Query 4369 GTTCATATTATGCAAGACCACCATGACACAGTAGCCAGTACACTTGGGGAACTTGTCATG 4428 |||||||||||| || ||||| | | | |||| || | ||| ||| | || ||| Sbjct 3834 GTTCATATTATGTAATACCACAAACAGATAGTACCCGCTGCACGAGGGATATTTTTCAAA 3893 Query 4429 CAACTTGGAGGGGAAGGCATGGAAGAATTTAGCCACCCCCTTGTGTCTGCCCAGCTCTTC 4488 | || || || || || || || ||||| || | ||| | || | | ||| Sbjct 3894 TAGTTTTGAAGGAAACGCGTGAAAAAATTTTGCAATAGGGCTGTTCCCTCCTAAATTTTC 3953 Query 4489 CATACACTCATCCATGATAATGGCAATGGGCCCCTTGGAGGCGGCTTGGGCAAAGACATT 4548 |||||||||||| ||||||||||| ||||| || | ||| || || |||| ||| Sbjct 3954 CATACACTCATCAATGATAATGGCTATGGGTCCGGTTTTGGCCGCCTGTACAAATTTATT 4013 Query 4549 TTGAGGGTGGGTGACATCATAATTATAGTCTTGCAAGAGCTCATCATAGGACATTTTTAC 4608 | || || | ||||||||| | || | ||||| || | || || | || | Sbjct 4014 ATTTGGATGCCCTAAATCATAATTTTCTTCGTTTAAGAGATCCTTGTACGATAGTTGCGC 4073 Query 4609 AAATTTGGGCATGAGGGTCCCGCTCTGGGGGACGATGGTGTCA-TCGGGCCCGGGTTGGT 4667 ||| || | | || || |||| || || || || || ||| ||| | Sbjct 4074 GAATCGAGGAGTTAATGTACCAGTCTGAGGCACAATTTCACCATTCTTTCCCATGTT-AT 4132 Query 4668 AGTTTCCCTCACAGATCTGGGTCTCCCAAGACATGATCTCTTGAGGGGGGATCATGTCAA 4727 |||||||||| || || | | ||| ||||| || || || |||||||||||||| Sbjct 4133 AGTTTCCCTCTATAATTTGTGCTTTCCATGACATAATTTCCTGTGGGGGGATCATGTCTG 4192 Query 4728 CCTGGGGGGCGATAAAGAAGACGGTCTCGGGGGCGGG-TGTGATGAGGTGGGCAGACATG 4786 | | |||| | |||||| | ||||| |||||||| | | || | ||| | ||||| Sbjct 4193 CATAAGGGGTTACAAAGAATATAGTCTCCGGGGCGGGATTTAATAATTTGGAC-GACATA 4251 Query 4787 AGGTTGCGAAGCAACTGGGACTTGCCTGACCCGGTGGGCCCGTAGATGACCCCGATGACG 4846 || || | | || ||||| || || || || || || || |||||||| || || Sbjct 4252 AGATTTCTCAATAATTGGGATTTTCCACTACCAGTTGGACCATATATGACCCCAATCACC 4311 Query 4847 GGCTGGGT 4854 || || || Sbjct 4312 GGTTGAGT 4319 Score = 174 bits (192), Expect = 4e-39 Identities = 261/371 (70%), Gaps = 0/371 (0%) Strand=Plus/Plus Query 18165 CCGAAGATGGCCACCCCTTCGATGCTGCCGCAATGGTCCTACATGCACATCGCCGGTCAG 18224 |||||||||||||| || |||||||| ||||||||||| ||| | || ||||| || || Sbjct 15308 CCGAAGATGGCCACTCCCTCGATGCTCCCGCAATGGTCTTACTTACATATCGCAGGACAA 15367 Query 18225 GATGCGTCAGAATACCTGTCGCCCGGCTTGGTGCAGTTCGCCAGGGCCACGGAAACGTAC 18284 ||||| |||||||| | || || | ||| || || || || || || ||||||||| Sbjct 15368 GATGCTTCAGAATATTTATCTCCTGCGTTGTGTCAATTTGCAAGCGCAACCGAAACGTAC 15427 Query 18285 TTTGCCCTGGGCAACAAGTTTAGGAACCCCACGGTGGCTCCCACTCACGATGTGACCACA 18344 ||| |||| || | || ||||| || || ||||| || || || |||||||| || || Sbjct 15428 TTTTCCCTAAGCGATAAATTTAGAAATCCGACGGTTGCGCCGACACACGATGTAACTACG 15487 Query 18345 GAACGTTCTCAGCGACTGCAGTTGCGCTTCGTGCCCATCAACCAGGAGGACACGCAGTAC 18404 ||| | || ||| |||| || || | || || || | | || || || ||||| Sbjct 15488 GAAAGATCGCAGAGACTACAATTAAGATTTGTTCCAGCGGAAAAAGAAGATACACAGTAT 15547 Query 18405 ACTTACAAGACCCGCTTTCAGCTGGCCGTGGGTGACAACCGGGTGCTGGACATGGCCAGC 18464 |||| || |||| ||||| || |||| ||||| ||| | | | || ||| || Sbjct 15548 ACTTTTAAAGCCCGATTTCAACTCACCGTCGGTGATAACAGAATATTAGATTTGGGTAGT 15607 Query 18465 ACGTACTTTGACATCCGCGGGATCATTGACCGCGGCCCCAGCTTCAAACCCTACAGCGGC 18524 | || ||||| || || | || ||| | || ||| || ||||| ||||| ||| Sbjct 15608 AGTTATTTTGATATAAAGGGAAAGATAGACAGAGGTCCCTCTTTTAAACCTTACAGTGGC 15667 Query 18525 ACGGCTTACAA 18535 || || ||||| Sbjct 15668 ACAGCATACAA 15678 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 121617774601310