Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Dipodomys_20ordii_20[refseq_20GCF_5F000151885.1_202014-12-12]
65,193 sequences; 2,236,368,823 total letters
Query= NC_029996.1
Length=134272
Score E
Sequences producing significant alignments: (Bits) Value
seq66 95.1 1e-14
seq147 84.2 2e-11
>seq66
Length=5789316
Score = 95.1 bits (104), Expect = 1e-14
Identities = 159/230 (69%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 39055 AAGCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCG 39114
|| ||||| || || || | ||||| || || ||| ||| || || || || || ||
Sbjct 2649897 AAACCTCCCCTCAAACGGAGCACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCA 2649838
Query 39115 GCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTG 39174
| || || || | || || ||||| ||||||||||| || || | ||||||||| | |
Sbjct 2649837 GACAGGGTACGGCCATCTTCCAGCTGCTTGCCCGCAAAGATCAGCCTCTGCTGGTCAGGG 2649778
Query 39175 GGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCC 39234
|| | || || |||||| ||| || |||| || | | || || || | ||||
Sbjct 2649777 GGAATGCCTTCCTTGTCCTGGATCTTAGCCTTGACATTCTCGATGGTGTCACTGGGCTCC 2649718
Query 39235 ACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284
|| |||| ||||| | || || ||||| || || || ||||| |||||
Sbjct 2649717 ACCTCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 2649668
>seq147
Length=2532799
Score = 84.2 bits (92), Expect = 2e-11
Identities = 144/209 (69%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 39076 ACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCA 39135
|||| || || ||| |||||| || || || || || | ||| || || | || ||
Sbjct 2384157 ACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATCTTCC 2384098
Query 39136 AGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATG 39195
||||| ||||| || || || || | ||||||||||| || | || |||||| ||| |
Sbjct 2384097 AGCTGCTTGCCTGCGAAGATCAGCCTCTGCTGGTCGGGAGGGATGCCCTCTTTATCCTGG 2384038
Query 39196 ATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTT 39255
|| || || | || | | ||||| || | |||||| |||| || || | ||
Sbjct 2384037 ATCTTGGCCTTCACATTCTCAATGGTATCACTGGGCTCCACCTCCAGGGTAATGGTCTTG 2383978
Query 39256 CCCGTCAGCGTTTTAACAAAGATTTGCAT 39284
|| ||||| || || || ||||| |||||
Sbjct 2383977 CCGGTCAGGGTCTTCACGAAGATCTGCAT 2383949
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 429204308973209
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |