Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Dipodomys_20ordii_20[refseq_20GCF_5F000151885.1_202014-12-12]
65,193 sequences; 2,236,368,823 total letters
Query= NC_029997.1
Length=105667
Score E
Sequences producing significant alignments: (Bits) Value
seq91 118 7e-22
seq148 86.0 4e-12
>seq91
Length=4965619
Score = 118 bits (130), Expect = 7e-22
Identities = 155/215 (72%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670
|||||||||||| |||||||||| ||||| ||||| ||||| ||| | ||||| || ||
Sbjct 1585775 ATGCAGATTTTCATTAAAACCCTTACGGGGAAAACCATCACACTCAAGGTTGAACCCTCG 1585716
Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730
|| ||| | |||| |||| || || || || ||||| | | || |||||
Sbjct 1585715 GATACTATGGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATGCTACCTGATCAG 1585656
Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790
|| | | || ||||| || || || |||||||| | || |||||| || ||||||
Sbjct 1585655 CAAAGACTGATCTTTGCTGGTAAGCAGCTGGAAGATGGACAAACTTTATCTGACTACAAC 1585596
Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTTTTAAG 23825
|| ||||| |||||||| | ||| |||| || ||
Sbjct 1585595 ATCCAAAAGGAGTCCACTCTTCATCTAGTATTGAG 1585561
>seq148
Length=5416653
Score = 86.0 bits (94), Expect = 4e-12
Identities = 136/194 (70%), Gaps = 1/194 (1%)
Strand=Plus/Minus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCA-CTCTCGAAGTTGACTCCAC 23669
||||||||||| || |||||||| ||||| ||||| |||| ||||||||||| || |
Sbjct 991264 ATGCAGATTTTTGTCAAAACCCTTACGGGGAAAACCATCATAACTCGAAGTTGAACCCTC 991205
Query 23670 GGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729
|| ||| | |||| |||| || || || || ||||| | || || |||||
Sbjct 991204 AGATACTATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCACCTGATCA 991145
Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789
|| | | || ||||| || || || |||||| | | ||| | |||| | | | |||
Sbjct 991144 GCAAAGACTGATCTTTGCTGGTAAGCAGCTGGAATATGGACGTATTTTATCCAACTGCAA 991085
Query 23790 CATACAAAAAGAGT 23803
||| |||| ||||
Sbjct 991084 CATTCAAAGGGAGT 991071
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 337741037958044
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |