Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dipodomys_20ordii_20[refseq_20GCF_5F000151885.1_202014-12-12] 65,193 sequences; 2,236,368,823 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq91 118 7e-22 seq148 86.0 4e-12 >seq91 Length=4965619 Score = 118 bits (130), Expect = 7e-22 Identities = 155/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||||||| |||||||||| ||||| ||||| ||||| ||| | ||||| || || Sbjct 1585775 ATGCAGATTTTCATTAAAACCCTTACGGGGAAAACCATCACACTCAAGGTTGAACCCTCG 1585716 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 || ||| | |||| |||| || || || || ||||| | | || ||||| Sbjct 1585715 GATACTATGGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATGCTACCTGATCAG 1585656 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 || | | || ||||| || || || |||||||| | || |||||| || |||||| Sbjct 1585655 CAAAGACTGATCTTTGCTGGTAAGCAGCTGGAAGATGGACAAACTTTATCTGACTACAAC 1585596 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTTTTAAG 23825 || ||||| |||||||| | ||| |||| || || Sbjct 1585595 ATCCAAAAGGAGTCCACTCTTCATCTAGTATTGAG 1585561 >seq148 Length=5416653 Score = 86.0 bits (94), Expect = 4e-12 Identities = 136/194 (70%), Gaps = 1/194 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCA-CTCTCGAAGTTGACTCCAC 23669 ||||||||||| || |||||||| ||||| ||||| |||| ||||||||||| || | Sbjct 991264 ATGCAGATTTTTGTCAAAACCCTTACGGGGAAAACCATCATAACTCGAAGTTGAACCCTC 991205 Query 23670 GGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || ||| | |||| |||| || || || || ||||| | || || ||||| Sbjct 991204 AGATACTATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCACCTGATCA 991145 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 || | | || ||||| || || || |||||| | | ||| | |||| | | | ||| Sbjct 991144 GCAAAGACTGATCTTTGCTGGTAAGCAGCTGGAATATGGACGTATTTTATCCAACTGCAA 991085 Query 23790 CATACAAAAAGAGT 23803 ||| |||| |||| Sbjct 991084 CATTCAAAGGGAGT 991071 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337741037958044