Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dipodomys_20ordii_20[refseq_20GCF_5F000151885.1_202014-12-12] 65,193 sequences; 2,236,368,823 total letters Query= NC_030116.1 Length=24662 Score E Sequences producing significant alignments: (Bits) Value seq4931 131 3e-26 >seq4931 Length=27746 Score = 131 bits (144), Expect = 3e-26 Identities = 475/733 (65%), Gaps = 14/733 (2%) Strand=Plus/Plus Query 13750 ATGGATAATGTTAATCCCTTTAATCATCACAGAAACCGTGGGCTGCAGTACAGGAGTCAA 13809 ||||| | |||||||| ||||||||||||||||| ||| || ||||||| ||| Sbjct 16748 ATGGACACGGTTAATCCATTTAATCATCACAGAAATACTGGTTTGAGGTACAGGTCTCAG 16807 Query 13810 CTGTTGGGAAATGGCAGATACTGTAATTTTCACATTCAAGTTCCCCAGAAATTTTTTGCG 13869 || || |||||||| | || | ||||| ||||| ||||| || || |||||||| Sbjct 16808 CTATTAGGAAATGGTCGCTATGCTTCCTTTCATATTCAGGTTCCGCAAAAGTTTTTTGCA 16867 Query 13870 GTTCGAAATTTGCTGTTGACTCCTGGAACATACTCTTATGAGTGGTGGTTCAGGAAAGAC 13929 || || |||||| || || ||| | ||| ||| || |||| || || ||||| Sbjct 16868 CTTAAAAGTTTGCTTCTGCTACCGGGATCGTACAGTTACGAATGGTCTTTTAGAAAAGAT 16927 Query 13930 CCTAATGTAGTGTTGCAATCAACTATGGGAAATGATCTTAGGAAGGATGGAGC--AAGCA 13987 || | | ||||| ||| | || |||||||| ||| |||| ||||| || | Sbjct 16928 GTAAACATGATTTTGCAGAGTACTCTTGGCAATGATCTGAGGGAGGACGGAGCGTCAGTA 16987 Query 13988 TTCATTATACAAGTATAAATTTGTTTGCTAGTTTCTTTCCAATGGATCAT---GCAACTT 14044 |||| || || || | | ||||||| ||||||||| ||| |||| | ||| Sbjct 16988 -ACATTTGAC-AGCATTAGCCTATTTGCTACTTTCTTTCCGATGTCTCATAACACTGCTT 17045 Query 14045 GCAGTGAGCTAATTTTGATGCTGAGAAATGATCAAAATGATCAGTCTTTTATGGATTAT- 14103 | | | || | ||||| | ||||| || |||||||| || || ||| Sbjct 17046 CTACTCTGGAAACT---ATGCTTCGCAATGAGGTTAACGATCAGTCCTTCGGCGACTATC 17102 Query 14104 ATGGGAGCAAAGAATAATCTCTATATAGTACCACCAAATCAGACCAATTTGCAGATAGAG 14163 | ||| || | || ||| | || || |||| || | ||| || Sbjct 17103 TTTCCAGC-GTTAACATGCTTTATGCTATTCCTCCGCATCAAACAACAGTGCCTATCTCT 17161 Query 14164 ATTCCTTCTAGATCTTGGACTGCTTTTAGAGGCTGGAGTTTTAATAGAGTTAAAGCTGCT 14223 ||||| | || |||| | || |||||||| ||| |||| |||| | ||| Sbjct 17162 ATTCCAGCAAGGAATTGGGCGGCCTTTAGAGGTTGGGCATTTACTAGACTAAAACAACAG 17221 Query 14224 GAAACACCAGCAGTGTGGTCAACTTATGATGTAAATTTCAGGTACAGTGGCAGTATTCCT 14283 ||||||||| | | | || | | ||| | | || |||||| ||| || || Sbjct 17222 GAAACACCAACCATTGGCTCTGCATTTGACCCATACTTTAGGTACTCGGGCTCAATCCCG 17281 Query 14284 TATCTAGATGGGACTTTTTATTTATCTCACACTTTTAATTCTATGTCAATTACTTTTGAT 14343 ||| |||| ||| |||||||||||||||||| | | || | || |||||| Sbjct 17282 TATTGGGATGCGACCTTTTATTTATCTCACACTATCAGAAAGGTGGCCATACAGTTTGAT 17341 Query 14344 TCAGCAATATCATGGCCAGGAAATGATAGAATGCTGATTCCTAATTATTTTGAGATAAAG 14403 || || || ||||| |||||||| ||| | | || |||||| | ||| | ||||| Sbjct 17342 TCTTCAGTAAGTTGGCCTGGAAATGACAGACTTTTAATACCTAATGAATTTCACATAAAA 17401 Query 14404 AGACGGGTAGATAGTGAAGGTTATACTACCAGTCA-ATCAAATATAACTAAAGACTTTTA 14462 ||| ||| || ||||| |||| ||| ||| | || | || ||||| || | || Sbjct 17402 AGAGAGGTGGACGCGGAAGGCTATAACACCTCTCAGAGCATA-ATTACTAAGGATTGGTA 17460 Query 14463 TCTAATTCAAATG 14475 | | ||||||||| Sbjct 17461 TATGATTCAAATG 17473 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 78740601027875