Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Dipodomys_20ordii_20[refseq_20GCF_5F000151885.1_202014-12-12]
65,193 sequences; 2,236,368,823 total letters
Query= NC_030116.1
Length=24662
Score E
Sequences producing significant alignments: (Bits) Value
seq4931 131 3e-26
>seq4931
Length=27746
Score = 131 bits (144), Expect = 3e-26
Identities = 475/733 (65%), Gaps = 14/733 (2%)
Strand=Plus/Plus
Query 13750 ATGGATAATGTTAATCCCTTTAATCATCACAGAAACCGTGGGCTGCAGTACAGGAGTCAA 13809
||||| | |||||||| ||||||||||||||||| ||| || ||||||| |||
Sbjct 16748 ATGGACACGGTTAATCCATTTAATCATCACAGAAATACTGGTTTGAGGTACAGGTCTCAG 16807
Query 13810 CTGTTGGGAAATGGCAGATACTGTAATTTTCACATTCAAGTTCCCCAGAAATTTTTTGCG 13869
|| || |||||||| | || | ||||| ||||| ||||| || || ||||||||
Sbjct 16808 CTATTAGGAAATGGTCGCTATGCTTCCTTTCATATTCAGGTTCCGCAAAAGTTTTTTGCA 16867
Query 13870 GTTCGAAATTTGCTGTTGACTCCTGGAACATACTCTTATGAGTGGTGGTTCAGGAAAGAC 13929
|| || |||||| || || ||| | ||| ||| || |||| || || |||||
Sbjct 16868 CTTAAAAGTTTGCTTCTGCTACCGGGATCGTACAGTTACGAATGGTCTTTTAGAAAAGAT 16927
Query 13930 CCTAATGTAGTGTTGCAATCAACTATGGGAAATGATCTTAGGAAGGATGGAGC--AAGCA 13987
|| | | ||||| ||| | || |||||||| ||| |||| ||||| || |
Sbjct 16928 GTAAACATGATTTTGCAGAGTACTCTTGGCAATGATCTGAGGGAGGACGGAGCGTCAGTA 16987
Query 13988 TTCATTATACAAGTATAAATTTGTTTGCTAGTTTCTTTCCAATGGATCAT---GCAACTT 14044
|||| || || || | | ||||||| ||||||||| ||| |||| | |||
Sbjct 16988 -ACATTTGAC-AGCATTAGCCTATTTGCTACTTTCTTTCCGATGTCTCATAACACTGCTT 17045
Query 14045 GCAGTGAGCTAATTTTGATGCTGAGAAATGATCAAAATGATCAGTCTTTTATGGATTAT- 14103
| | | || | ||||| | ||||| || |||||||| || || |||
Sbjct 17046 CTACTCTGGAAACT---ATGCTTCGCAATGAGGTTAACGATCAGTCCTTCGGCGACTATC 17102
Query 14104 ATGGGAGCAAAGAATAATCTCTATATAGTACCACCAAATCAGACCAATTTGCAGATAGAG 14163
| ||| || | || ||| | || || |||| || | ||| ||
Sbjct 17103 TTTCCAGC-GTTAACATGCTTTATGCTATTCCTCCGCATCAAACAACAGTGCCTATCTCT 17161
Query 14164 ATTCCTTCTAGATCTTGGACTGCTTTTAGAGGCTGGAGTTTTAATAGAGTTAAAGCTGCT 14223
||||| | || |||| | || |||||||| ||| |||| |||| | |||
Sbjct 17162 ATTCCAGCAAGGAATTGGGCGGCCTTTAGAGGTTGGGCATTTACTAGACTAAAACAACAG 17221
Query 14224 GAAACACCAGCAGTGTGGTCAACTTATGATGTAAATTTCAGGTACAGTGGCAGTATTCCT 14283
||||||||| | | | || | | ||| | | || |||||| ||| || ||
Sbjct 17222 GAAACACCAACCATTGGCTCTGCATTTGACCCATACTTTAGGTACTCGGGCTCAATCCCG 17281
Query 14284 TATCTAGATGGGACTTTTTATTTATCTCACACTTTTAATTCTATGTCAATTACTTTTGAT 14343
||| |||| ||| |||||||||||||||||| | | || | || ||||||
Sbjct 17282 TATTGGGATGCGACCTTTTATTTATCTCACACTATCAGAAAGGTGGCCATACAGTTTGAT 17341
Query 14344 TCAGCAATATCATGGCCAGGAAATGATAGAATGCTGATTCCTAATTATTTTGAGATAAAG 14403
|| || || ||||| |||||||| ||| | | || |||||| | ||| | |||||
Sbjct 17342 TCTTCAGTAAGTTGGCCTGGAAATGACAGACTTTTAATACCTAATGAATTTCACATAAAA 17401
Query 14404 AGACGGGTAGATAGTGAAGGTTATACTACCAGTCA-ATCAAATATAACTAAAGACTTTTA 14462
||| ||| || ||||| |||| ||| ||| | || | || ||||| || | ||
Sbjct 17402 AGAGAGGTGGACGCGGAAGGCTATAACACCTCTCAGAGCATA-ATTACTAAGGATTGGTA 17460
Query 14463 TCTAATTCAAATG 14475
| | |||||||||
Sbjct 17461 TATGATTCAAATG 17473
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 78740601027875
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |