Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Dipodomys_20ordii_20[refseq_20GCF_5F000151885.1_202014-12-12]
65,193 sequences; 2,236,368,823 total letters
Query= NC_030394.2
Length=126965
Score E
Sequences producing significant alignments: (Bits) Value
seq25 145 6e-30
seq228 109 4e-19
>seq25
Length=23434732
Score = 145 bits (160), Expect = 6e-30
Identities = 131/165 (79%), Gaps = 0/165 (0%)
Strand=Plus/Minus
Query 29714 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGC 29773
|| || |||| ||| || |||||||| ||||| || | ||||||||| ||||| ||||||
Sbjct 21720715 AGGCCTGTGATGTGTGCAATCATGTAGGTGAGCAGGGCGTAGCTGGCAATGTTGAAGGGC 21720656
Query 29774 ACCCCGAGCCCCATGTCCCCTGACCTCTGGTAGAGCTGGCACGAGAGCTCTCCGTCGCTC 29833
|| || || |||||||| || ||||||||||| |||||||| || ||||| || | |
Sbjct 21720655 ACACCCAGGCCCATGTCTCCAGACCTCTGGTACAGCTGGCAGGACAGCTCCCCATTCACC 21720596
Query 29834 ACGTAAAACTGACACATGGCATGGCACGGAGGAAGGGCCATGAGA 29878
|| || ||||| || | ||||||||| ||||| || ||||| |||
Sbjct 21720595 ACATAGAACTGGCAGAGGGCATGGCAGGGAGGCAGCGCCATCAGA 21720551
Score = 96.9 bits (106), Expect = 3e-15
Identities = 109/146 (75%), Gaps = 0/146 (0%)
Strand=Plus/Minus
Query 30017 AAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAG 30076
||||||||||||||||| || || || || |||||||| || |||| | | ||
Sbjct 21716001 AAATGCCTCCACTGGAAGCCATAAACTGGGCCCAGGTCCCCTTCTTTTCGGGCAGAAAAT 21715942
Query 30077 CCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCG 30136
||| |||||||||| |||| ||| || ||||| |||||||| || || |||||
Sbjct 21715941 CCCAGGCTGTCCAAAAAATCTCGGGATCCATTGGCATCCCAGATTTTCACTCCCTTGGAA 21715882
Query 30137 GAGAGCTCTTTGGAGTTTGTGGACCC 30162
|| || ||||||| ||||||||| ||
Sbjct 21715881 GACAGTTCTTTGGCGTTTGTGGATCC 21715856
>seq228
Length=2243194
Score = 109 bits (120), Expect = 4e-19
Identities = 187/268 (70%), Gaps = 10/268 (4%)
Strand=Plus/Plus
Query 114254 GCCAGGTGATGAGCTCCAGACGGGGGATCTTTAAGCTCCCTGCTGAGGACTACGTTTAGC 114313
||||| ||||||||| ||||| || || || || || || || |||| || |
Sbjct 137370 GCCAGAAAATGAGCTCCTTGTGGGGGTTCCTTGAGTTCTCTACTAAGAACTATATTAATT 137429
Query 114314 CTGTCTCTCAGAGGTCTATTCTTTTCGGGGATGGAGAACCAAGTCTTTCTACCCATTATC 114373
||||| | | ||||| |||||| || || ||||||||||| || || |||||||| |||
Sbjct 137430 CTGTCCTTTAAAGGTCGATTCTTCTCAGGAATGGAGAACCAGGTTTTCCTACCCATAATC 137489
Query 114374 ACCACGTTCTGCTTACCTCTGTCGGAAGACGTAGCGGTCAAGGCTCGAAAGTGTTTAAAA 114433
|||| ||||| |||||| | | ||| || | ||||| ||| || | || ||
Sbjct 137490 ACCAGATTCTGTTTACCTTCTACTGTAGAGGTTGTGGTCATTCTTCGGAAATACTTGAAT 137549
Query 114434 TCTTTGCAAAGTCTCACCGGATGCCACGGCAGATCTCCGTTGTTCCCGATGCCCATGT-C 114492
|| | || | ||| |||| || || | || || || ||||||||||||| |
Sbjct 137550 TC------ACTCCTGAGCGGGGGCCAGGGGAGGGCGCCATTTTTGCCGATGCCCATGTGC 137603
Query 114493 T-GGACACGCTGCCACGATACCGTTCAG 114519
| ||||||| |||||||| | ||||||
Sbjct 137604 TGGGACACG--GCCACGATGCAGTTCAG 137629
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 405840487217998
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |