Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dipodomys_20ordii_20[refseq_20GCF_5F000151885.1_202014-12-12] 65,193 sequences; 2,236,368,823 total letters Query= NC_030394.2 Length=126965 Score E Sequences producing significant alignments: (Bits) Value seq25 145 6e-30 seq228 109 4e-19 >seq25 Length=23434732 Score = 145 bits (160), Expect = 6e-30 Identities = 131/165 (79%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 29714 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGC 29773 || || |||| ||| || |||||||| ||||| || | ||||||||| ||||| |||||| Sbjct 21720715 AGGCCTGTGATGTGTGCAATCATGTAGGTGAGCAGGGCGTAGCTGGCAATGTTGAAGGGC 21720656 Query 29774 ACCCCGAGCCCCATGTCCCCTGACCTCTGGTAGAGCTGGCACGAGAGCTCTCCGTCGCTC 29833 || || || |||||||| || ||||||||||| |||||||| || ||||| || | | Sbjct 21720655 ACACCCAGGCCCATGTCTCCAGACCTCTGGTACAGCTGGCAGGACAGCTCCCCATTCACC 21720596 Query 29834 ACGTAAAACTGACACATGGCATGGCACGGAGGAAGGGCCATGAGA 29878 || || ||||| || | ||||||||| ||||| || ||||| ||| Sbjct 21720595 ACATAGAACTGGCAGAGGGCATGGCAGGGAGGCAGCGCCATCAGA 21720551 Score = 96.9 bits (106), Expect = 3e-15 Identities = 109/146 (75%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 30017 AAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAG 30076 ||||||||||||||||| || || || || |||||||| || |||| | | || Sbjct 21716001 AAATGCCTCCACTGGAAGCCATAAACTGGGCCCAGGTCCCCTTCTTTTCGGGCAGAAAAT 21715942 Query 30077 CCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCG 30136 ||| |||||||||| |||| ||| || ||||| |||||||| || || ||||| Sbjct 21715941 CCCAGGCTGTCCAAAAAATCTCGGGATCCATTGGCATCCCAGATTTTCACTCCCTTGGAA 21715882 Query 30137 GAGAGCTCTTTGGAGTTTGTGGACCC 30162 || || ||||||| ||||||||| || Sbjct 21715881 GACAGTTCTTTGGCGTTTGTGGATCC 21715856 >seq228 Length=2243194 Score = 109 bits (120), Expect = 4e-19 Identities = 187/268 (70%), Gaps = 10/268 (4%) Strand=Plus/Plus Query 114254 GCCAGGTGATGAGCTCCAGACGGGGGATCTTTAAGCTCCCTGCTGAGGACTACGTTTAGC 114313 ||||| ||||||||| ||||| || || || || || || || |||| || | Sbjct 137370 GCCAGAAAATGAGCTCCTTGTGGGGGTTCCTTGAGTTCTCTACTAAGAACTATATTAATT 137429 Query 114314 CTGTCTCTCAGAGGTCTATTCTTTTCGGGGATGGAGAACCAAGTCTTTCTACCCATTATC 114373 ||||| | | ||||| |||||| || || ||||||||||| || || |||||||| ||| Sbjct 137430 CTGTCCTTTAAAGGTCGATTCTTCTCAGGAATGGAGAACCAGGTTTTCCTACCCATAATC 137489 Query 114374 ACCACGTTCTGCTTACCTCTGTCGGAAGACGTAGCGGTCAAGGCTCGAAAGTGTTTAAAA 114433 |||| ||||| |||||| | | ||| || | ||||| ||| || | || || Sbjct 137490 ACCAGATTCTGTTTACCTTCTACTGTAGAGGTTGTGGTCATTCTTCGGAAATACTTGAAT 137549 Query 114434 TCTTTGCAAAGTCTCACCGGATGCCACGGCAGATCTCCGTTGTTCCCGATGCCCATGT-C 114492 || | || | ||| |||| || || | || || || ||||||||||||| | Sbjct 137550 TC------ACTCCTGAGCGGGGGCCAGGGGAGGGCGCCATTTTTGCCGATGCCCATGTGC 137603 Query 114493 T-GGACACGCTGCCACGATACCGTTCAG 114519 | ||||||| |||||||| | |||||| Sbjct 137604 TGGGACACG--GCCACGATGCAGTTCAG 137629 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 405840487217998