Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dipodomys_20ordii_20[refseq_20GCF_5F000151885.1_202014-12-12] 65,193 sequences; 2,236,368,823 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq20 100 2e-16 seq17 86.0 5e-12 >seq20 Length=25211774 Score = 100 bits (110), Expect = 2e-16 Identities = 99/128 (77%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 4572 TCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTCTTTTTA 4631 |||||||||||||| || || || |||||||| | || ||||| | |||| ||| || Sbjct 21308483 TCGTCTCTGCTAATAAGCTCATTGGAAAACGTGAGGCCAGGCATAAGTCCTCGCTTCTTC 21308542 Query 4632 AGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCGGCAAACGCT 4691 ||||| ||||| | || || || ||||||||||| || || || || |||||||| ||| Sbjct 21308543 AGCCAGAATATCGACGCGAAAGAACCAGAAAAGAAGATTCCCTCCACCGCGGCAAAGGCT 21308602 Query 4692 ACTAATCG 4699 || | ||| Sbjct 21308603 ACAACTCG 21308610 >seq17 Length=26966924 Score = 86.0 bits (94), Expect = 5e-12 Identities = 65/77 (84%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 4260 TGGTATTCGGATACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAACGAAATATTTTCC 4319 ||||| || || ||||| || || ||||| || ||||| |||||||| ||||| |||||| Sbjct 9459669 TGGTACTCTGAAACTCGTTTCTCAAAGAAGTTTGTTTTCCCTTCTAAAGAAATGTTTTCC 9459610 Query 4320 ATAAAATCAAACGGATT 4336 ||||||||||| ||||| Sbjct 9459609 ATAAAATCAAAGGGATT 9459593 Score = 82.4 bits (90), Expect = 7e-11 Identities = 90/120 (75%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 4931 TACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCAAAACATGAGATAT 4990 ||| || ||||| ||||| || || ||||| ||||||||||| || || | ||||| || Sbjct 9446978 TACCAAATTTTCATTTACAATTCCATCACTAGCTGCAAAAAAGGCTAAGATGTGAGAGAT 9446919 Query 4991 AAAGTACTGTTCGTCAGGCTTAAGTTTTTTCCAGTGGGGCAAATCTTTAGTTAAATCAAC 5050 || |||| || || | |||||||| |||||||| || | ||| || | || ||||| Sbjct 9446918 GAAATACTTCTCATCGGATTTAAGTTTGTTCCAGTGAGGAAGATCCTTTGATAGGTCAAC 9446859 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 426710292144269