Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Dipodomys_20ordii_20[refseq_20GCF_5F000151885.1_202014-12-12]
65,193 sequences; 2,236,368,823 total letters
Query= NC_030656.1
Length=133492
Score E
Sequences producing significant alignments: (Bits) Value
seq20 100 2e-16
seq17 86.0 5e-12
>seq20
Length=25211774
Score = 100 bits (110), Expect = 2e-16
Identities = 99/128 (77%), Gaps = 0/128 (0%)
Strand=Plus/Plus
Query 4572 TCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTCTTTTTA 4631
|||||||||||||| || || || |||||||| | || ||||| | |||| ||| ||
Sbjct 21308483 TCGTCTCTGCTAATAAGCTCATTGGAAAACGTGAGGCCAGGCATAAGTCCTCGCTTCTTC 21308542
Query 4632 AGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCGGCAAACGCT 4691
||||| ||||| | || || || ||||||||||| || || || || |||||||| |||
Sbjct 21308543 AGCCAGAATATCGACGCGAAAGAACCAGAAAAGAAGATTCCCTCCACCGCGGCAAAGGCT 21308602
Query 4692 ACTAATCG 4699
|| | |||
Sbjct 21308603 ACAACTCG 21308610
>seq17
Length=26966924
Score = 86.0 bits (94), Expect = 5e-12
Identities = 65/77 (84%), Gaps = 0/77 (0%)
Strand=Plus/Minus
Query 4260 TGGTATTCGGATACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAACGAAATATTTTCC 4319
||||| || || ||||| || || ||||| || ||||| |||||||| ||||| ||||||
Sbjct 9459669 TGGTACTCTGAAACTCGTTTCTCAAAGAAGTTTGTTTTCCCTTCTAAAGAAATGTTTTCC 9459610
Query 4320 ATAAAATCAAACGGATT 4336
||||||||||| |||||
Sbjct 9459609 ATAAAATCAAAGGGATT 9459593
Score = 82.4 bits (90), Expect = 7e-11
Identities = 90/120 (75%), Gaps = 0/120 (0%)
Strand=Plus/Minus
Query 4931 TACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCAAAACATGAGATAT 4990
||| || ||||| ||||| || || ||||| ||||||||||| || || | ||||| ||
Sbjct 9446978 TACCAAATTTTCATTTACAATTCCATCACTAGCTGCAAAAAAGGCTAAGATGTGAGAGAT 9446919
Query 4991 AAAGTACTGTTCGTCAGGCTTAAGTTTTTTCCAGTGGGGCAAATCTTTAGTTAAATCAAC 5050
|| |||| || || | |||||||| |||||||| || | ||| || | || |||||
Sbjct 9446918 GAAATACTTCTCATCGGATTTAAGTTTGTTCCAGTGAGGAAGATCCTTTGATAGGTCAAC 9446859
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 426710292144269
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |