Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Dipodomys_20ordii_20[refseq_20GCF_5F000151885.1_202014-12-12]
65,193 sequences; 2,236,368,823 total letters
Query= NC_030792.1
Length=32690
Score E
Sequences producing significant alignments: (Bits) Value
seq4931 522 6e-144
>seq4931
Length=27746
Score = 522 bits (578), Expect = 6e-144
Identities = 1286/1928 (67%), Gaps = 43/1928 (2%)
Strand=Plus/Plus
Query 18263 CTCGGTCAACAGGCCGCCCCCAACCGCCCTAACTACATTGGCTTTAGAGATAATTTCATA 18322
|||| ||| || ||| || ||| | || || || || || ||||| ||||| || ||
Sbjct 16127 CTCGCTCAGCAAAGCGCGCCAAACAGGCCAAATTATATAGGTTTTAGGGATAACTTTATC 16186
Query 18323 GGGCTCATGTATTATAACAGCAATGGCAATATGGGGGTACTGGCAGGACAATCATCTCAA 18382
||| | |||| ||||||||| ||| ||||| |||| ||| | || || ||||| || ||
Sbjct 16187 GGGTTAATGTTTTATAACAGTAATAGCAATTTGGGTGTATTAGCCGGTCAATCGTCACAG 16246
Query 18383 CTTAATGCTGTTGTTGACTTGCAAGATAGAAATACTGAACTATCTTACCAGCTGTTGATG 18442
||||||||||| | ||| | ||||| |||||||| ||| | || || ||||| || |
Sbjct 16247 CTTAATGCTGTCATCGACCTTCAAGACAGAAATACAGAATTGTCATATCAGCTTATGTTA 16306
Query 18443 GATTCGCTCACA-GACAGACAGCGCTACTTTTCCATGTGGAACCAGGCAGTTGACAGCTA 18501
||| | ||| || ||| || || | | ||||||| || || || || ||
Sbjct 16307 GATAATTT-ACACGATAGAACTCGATATTACAGCTTGTGGAATCAAGCCGTGGATTCATA 16365
Query 18502 TGACCCAGAAGTCAGGGTTATTGACAACCATGGGGTGGAGGATGAACTACCTAATTATTG 18561
||| ||||| ||| | | || ||||| ||| || || || ||||| || ||||||||
Sbjct 16366 TGATCCAGAGGTCCGAATCATAGACAATATTGGAGTAGAAGACGAACTTCCAAATTATTG 16425
Query 18562 CTACCCGCTGAGTGGCATGGGGTCGT-TTGAAGACA-TGCTTCCCATGAAAGTGAATGCT 18619
|| ||| | ||| ||| || | |||| | | |||| || ||| || |
Sbjct 16426 CTTTCCGTTATCTGG-ATGTTCTCCTATTGATTATACTGCTGTTAATCAAAATGGAC--- 16481
Query 18620 CAAAGGAATGCCTTTGAGGCCGACAACCAAAATCGAAACGGTCAGCATCGTATAGCCTTT 18679
||| ||| | | ||| | || | || ||| || ||||| |
Sbjct 16482 --AAGCAAT-----------CAATAACAATAACCCTG-CG--CAGGTTCTTATAGGCAAA 16525
Query 18680 GGCAATGTGGAAGCTATGGAAATCAACCTCAATGCCAACTTGTTTAAGGGGTTTCTCTAC 18739
|| ||||| ||| |||||||||||| | |||||| ||| ||| ||||| ||
Sbjct 16526 GGAAATGTTGAATGCATGGAAATCAACATAGCGGCCAACCTGTGGAAGAATTTTCTGTAT 16585
Query 18740 TCTAACGTGGCCTTGTACCTGCCCGACGAACTCAAATACACACCCGAGTACGCGGTGGAG 18799
||||| | || |||| |||||||| | | ||| ||| |||| | | ||| |
Sbjct 16586 TCTAATATCGCGCTGTATCTGCCCGATAACTTTAAAACCACTCCCGCAAATGTGGTATTG 16645
Query 18800 CCCGCCAACCACAATACCTACGCTTACATGAACATGCGTTTGCCTGTCGCTAATCTGATT 18859
|| | || || ||||||||||| || | || | || |||| |
Sbjct 16646 CCGCAGGATCAGCGGCTATATGCTTACATGAATTCTCGCATTCCAGCCGGGGGTCTGGTA 16705
Query 18860 GACACCTATGTGAATATCGGTGCTAAATGGTCTCCTGATGTGATGGATACTGTTAACCCT 18919
|| ||| | || || || | | ||||| ||||||||||| || ||||| ||
Sbjct 16706 GAGGATTATATCAACATAGGAACCAGGTGGTCAATAGATGTGATGGACACGGTTAATCCA 16765
Query 18920 TTCAACCACCACAGAAATGCCGGACTGCGGTACAGGTCGCAACTGCTGGGGAATGGGCGC 18979
|| || || ||||||||| | || || |||||||||| || || | || ||||| |||
Sbjct 16766 TTTAATCATCACAGAAATACTGGTTTGAGGTACAGGTCTCAGCTATTAGGAAATGGTCGC 16825
Query 18980 TACTGTCAATTCCATATTCAGGTCCCTCAGAAGTTTTTTGCGATCAAAAATCTGCTCCTG 19039
|| | || ||||||||||| || || ||||||||||| | |||| | |||| |||
Sbjct 16826 TATGCTTCCTTTCATATTCAGGTTCCGCAAAAGTTTTTTGCACTTAAAAGTTTGCTTCTG 16885
Query 19040 CTTCCGGGGACGTACACGTACGAGTGGTCTTTTAGAAAAGATGTGAACATGATCCTGCAG 19099
|| ||||| |||||| ||||| |||||||||||||||||||| |||||||| |||||
Sbjct 16886 CTACCGGGATCGTACAGTTACGAATGGTCTTTTAGAAAAGATGTAAACATGATTTTGCAG 16945
Query 19100 AGCTCCCTGGGAAACGACCTCCGCGTGGACGGTGCCAGCATTAGCA-TACAGAGCATCAA 19158
|| | || || || || || | | |||||| | | || || || | | ||||| |
Sbjct 16946 AGTACTCTTGGCAATGATCTGAGGGAGGACGGAG-CGTCAGTAACATTTGACAGCATTAG 17004
Query 19159 CCTCTATGCGAGCTTCTTCCCCCTGGCGCACAACACAGCCTCCACTCTGGAAGCCATGTT 19218
||| | ||| | ||||| || || | || ||||| || || ||||||||| | ||| |
Sbjct 17005 CCTATTTGCTACTTTCTTTCCGATGTCTCATAACACTGCTTCTACTCTGGAAACTATGCT 17064
Query 19219 GCGAAACGACGTGAACGACCAGTCGTTCGCGGACTACCTGTCCGCCGCCAACATGCTGTA 19278
|| || || || ||||| ||||| |||| ||||| || ||| || |||||||| ||
Sbjct 17065 TCGCAATGAGGTTAACGATCAGTCCTTCGGCGACTATCTTTCCAGCGTTAACATGCTTTA 17124
Query 19279 CCCCATTCCAGCCAACGCCACCAAC-GTGCCCATCTCCATCCCCGCACGGAACTGGGCCG 19337
| ||||| || | | |||| ||||| ||||| || || ||| |||| ||||| |
Sbjct 17125 TGCTATTCC-TCCGCATCAAACAACAGTGCCTATCTCTATTCCAGCAAGGAATTGGGCGG 17183
Query 19338 GCTTCCGCGGCTGGAGCTTTACGCGCATCAAGCAGCACGAGACGCCGGCGCTGGGCTCTC 19397
||| | || ||| ||||| | | || || || || || || | | ||||||
Sbjct 17184 CCTTTAGAGGTTGGGCATTTACTAGACTAAAACAACAGGAAACACCAACCATTGGCTCTG 17243
Query 19398 CCTTCGACCCCTACTTTACCTACTCCGGCTCCATCCCCTACCTGGATGGCACCTTCTACC 19457
| || ||||| ||||||| ||||| ||||| ||||| || ||||| ||||| ||
Sbjct 17244 CATTTGACCCATACTTTAGGTACTCGGGCTCAATCCCGTATTGGGATGCGACCTTTTATT 17303
Query 19458 TCAGTCACACCTTCCGGCGAGTCTCCATCATGTTTGACTCCTCTGTCTCCTGGCCCGGAA 19517
| |||||| || | || |||| |||||| || || || ||||| ||||
Sbjct 17304 TATCTCACACTATCAGAAAGGTGGCCATACAGTTTGATTCTTCAGTAAGTTGGCCTGGAA 17363
Query 19518 ACGACCGCTTGCTGACTCCTAACGAGTTCGAAATCAAGCGGTACGTGGACGGCGAGGGTT 19577
| ||| | | | | ||||| || || | || || | | ||||||| || || |
Sbjct 17364 ATGACAGACTTTTAATACCTAATGAATTTCACATAAAAAGAGAGGTGGACGCGGAAGGCT 17423
Query 19578 ACAACATGGGCCAGTCCAACATGACCAAGGATTGGTTCATGGTTCAGATGCTGGCCCACT 19637
| |||| ||| || || || |||||||||| ||| |||| ||||| || ||||
Sbjct 17424 ATAACACCTCTCAGAGCATAATTACTAAGGATTGGTATATGATTCAAATGCTCGCTCACT 17483
Query 19638 ATAACATCGGCTACCAGGGCTACTACCT-GCCAGAGAGTTACAAAGACCGCCTCTACTCC 19696
| || ||||| ||||| || | |||| ||| ||| ||| ||||| | | || |||
Sbjct 17484 ACAATATCGGATACCAAGGTTTTCACCTACCCACAGA-TTATAAAGATAGATTGTATTCC 17542
Query 19697 TTCCTGCGAAATTTCGAGCCCATGTGTCGGCAGATGGTGGAT--GTGCAAAACTACGAAC 19754
|| | ||||||| || ||||||||| | || | |||||| | || || |||
Sbjct 17543 TTTTTAAGAAATTTTGAACCCATGTGTAGACAAGTTGTGGATCCTGGTAAGAC--GGAAA 17600
Query 19755 ACTACCACGCCGTCAGAGTGGCCGATCAGCATAACAACTCCGGCTTTGCCAGCGCCATAT 19814
| || || |||| | |||||||||| || || || ||| | |||| |
Sbjct 17601 AATATCAACCCGTTGCTCTTAAATATCAGCATAATAATTCAGGTTTT--AAAAACCAT-T 17657
Query 19815 CCGGCTCGCACTCCAGAGAAGGGCACCCGTACCCCGCGAACTGGCCGTATCCCCTCATCG 19874
|| | || |||| || || || ||| |||||||| | || |||||||
Sbjct 17658 ATGGACCCTTTGGGCGACAAGGCCATCCTTATCCCTGTAACTGGCCTTTCCCGCTCATCG 17717
Query 19875 GAGCTACCGCAGTGCCCTCCATCACGCAGAAAAAGTTCCTGTGTGACCGCACGCTCTGGC 19934
||| |||| |||| || |||| ||| || | |||||| | || || |||
Sbjct 17718 GAGAACAGGCAGGTAAAACCATTACTCAGAGAAAATTTTTATGTGACAGAACACTGTGGA 17777
Query 19935 GCATTCCCTTCTCCTCCAACTTCATGTCTATGGGATCTCTCACCGACCTGGGTCAGAACC 19994
| ||||| |||||||||||||| ||||| |||||| | || || || ||||| || ||
Sbjct 17778 GGATTCCGTTCTCCTCCAACTTTATGTCCATGGGAACACTAACAGATCTGGGACAAAATT 17837
Query 19995 TCCTGTACGCTAACTCCGCCCACGCGCTCGACATGACCTTCGAGGTGGATGACATGAATG 20054
| || || || || || || || || | |||||||| |||| || ||| ||| | |
Sbjct 17838 TGCTATATGCAAATTCAGCTCATGCTTTAGACATGACAGTCGAAGTAGATTCAATGGAGG 17897
Query 20055 AGCCCAC---CCTCTTGTATGTTTTGTTCGAAGTGTTTGACGTGGCTCGCGTGCATCAAC 20111
| || || ||| || ||| | || ||||| |||||| || | |||||||| |
Sbjct 17898 AACCAACTTATCTCATG-ATG--CTATTTGAAGTATTTGACATGTGCAGAGTGCATCAGC 17954
Query 20112 CGCACCGCGGGGTCATTGAGGTGGTGTACCTGAGAACGCCCTTCTCTGCCGGAAACGCAA 20171
| || || || ||||| || || | || || ||||| ||||| || || || |||||
Sbjct 17955 CTCAACGAGGTGTCATAGAAGTTATTTATCTAAGAACCCCCTTTTCGGCAGGTAACGCCG 18014
Query 20172 CCACATAA 20179
| ||||||
Sbjct 18015 CAACATAA 18022
Score = 95.1 bits (104), Expect = 3e-15
Identities = 473/737 (64%), Gaps = 26/737 (4%)
Strand=Plus/Plus
Query 5859 tttttttGTTGTCCAGCTTGGTGGCGAACGAGCCGTAGAGGGCGTTGGAGAGCAGCTTTG 5918
||||||| || || | | ||||||| || || ||||| || ||||| || | ||| || |
Sbjct 5593 TTTTTTTATTATCTAACCTGGTGGCAAAGGAACCGTACAGTGCGTTTGACAACAGTTTAG 5652
Query 5919 CGATGCTGCGCA------TGGTTTGGTTCTTTTCTCGGTCGGCCTTCTCTTTGGCCGCGA 5972
||||||| ||| || | ||||| ||||| || |||||| |||| ||||| |
Sbjct 5653 CGATGCTTCGCTGTGTGCTGTTGTGGTTTTTTTC-CG--CGGCCT---CTTTTGCCGCTA 5706
Query 5973 TGTTGAGTTGC-ACGTACTCTTTGGCTATGCACTTCCATTCTGGAAACACGGTGGTCTTT 6031
| || ||| || ||||| ||| | || | ||| ||||| | ||| || ||
Sbjct 5707 TATT-AGTGGCTACGTATTCTCTTGCCACGCAATTCCACTGCTCAAATACTGTAACTCGC 5765
Query 6032 TCGTCCGGCAGGATGGTGACGCTCCAGCCGCGGTTGTGTAGCGTGATCACATCGATAGAG 6091
|| || || | | | | |||| || || || || | || || ||||||| ||
Sbjct 5766 TCATCTGGGACCAACCTAATCTTCCATCCTCGATTATGCAAAGTAATGGCATCGATGGAC 5825
Query 6092 GTTGCTATCTCGCCGCGCAGCGGCTCGTTGGTCCAGCACAGGCGCCCGCCCTTGCGCGAG 6151
|| || ||||| | | || || |||||||| || |||||||| || | |||
Sbjct 5826 GTGCATACTTCGCCTCTTAAATTTTCATTTGTCCAGCAAAGACGCCCGCCTTTTCTCGAA 5885
Query 6152 CAAAATGGGGGCAGGACGTCTA-GCATCTCGTCGTCCGGAGGGTCGGCGTCGATGGTGAA 6210
|||||||| || | || |||| | || || ||| | || | ||| || || || |
Sbjct 5886 CAAAATGGCGGTAAAACATCTAAGTAT-TCTTCGGCAGGGGCGTCAGCATCAATTACAAC 5944
Query 6211 GACCGCGGGCAGGAGGTCTGGGTCGAAGTACCCGAGAGGCCCTCCGGCTTTCATCTTGCG 6270
| || || | ||| | ||||| || || | | |||| || || |||
Sbjct 5945 AATGGCCGGTAACAGGGCAGGGTCAAAATAGGAAATTTTGTCACCGG-TTGCAAA--GCG 6001
Query 6271 TTC-GTAGAC-GCT-GACGGCCACCGCGCGGTCGTATGGGTTGAGCGGGTACCCGGCGGG 6327
|| | | || | | || |||| | ||| | || || || || || |||
Sbjct 6002 TTTTGAATACTGATAGAGAGCCAAGTTTCTGTCAAAGGGATTAAGTGGTGGGCCAAAGGG 6061
Query 6328 AAAGGGGTGTGTGAGCGCGCTGGCATACATGCCGCAGATGTCGTAGACGTAGACGGGCTC 6387
| ||| || || | |||||||||||||| ||| | || || || || || | || ||
Sbjct 6062 CATGGGATGCGTTAATGCGCTGGCATACATTCCGGAAATATCATAAACATAAATAGGTTC 6121
Query 6388 TGAGAGCACGCCTATGTAAGTGGGGTAGCATCGGCCGCCGCGGATGCTGGCGCGCACGTA 6447
| || |||||||||||||||||||| || || || | |||||| | | || |
Sbjct 6122 CTCAAAAACACCTATGTAAGTGGGGTAGCACCGTCCCCCTCTGATGCTTTCTCTTACAAA 6181
Query 6448 CTCGTACATCTCGTGGGACGGGGCCAGGAGGGCCTCC--CCCAGGTTGTTTTTGTCCGGT 6505
|| || || ||||| ||||||||||| || | | | | | | ||||||| | |
Sbjct 6182 ATCATAAATGTCGTGTGACGGGGCCAGAAGAGTATTCGACAAATGATGTTTTTCTAACTT 6241
Query 6506 CGCTCGGCCCTGAATAGGACTTGCTTAAAAATGGCGTGGGAATTGGAACTGATGGTGGGG 6565
| | | | || | | |||||||||||| || ||||| || || || || ||
Sbjct 6242 --TTGAGTCTTAAACACCAGTTGCTTAAAAATTGCAAAAGAATTTGAGCTAATTGTTGGA 6299
Query 6566 CGCTGAAAGACGTTGAA 6582
|||||||| || || ||
Sbjct 6300 CGCTGAAAAACATTAAA 6316
Score = 93.3 bits (102), Expect = 9e-15
Identities = 243/371 (65%), Gaps = 0/371 (0%)
Strand=Plus/Plus
Query 17432 CCGAAGATGGCCACCCCGGCGATGCTTCCACAATGGTCCTACATGCACATTGCGGGCCAG 17491
|||||||||||||| || ||||||| || |||||||| ||| | || || || || ||
Sbjct 15308 CCGAAGATGGCCACTCCCTCGATGCTCCCGCAATGGTCTTACTTACATATCGCAGGACAA 15367
Query 17492 GACGCCGCGGAATACCTGTCGCCCGCTCTCGTCCAGTTCGCACAGGCCACGAATTCCTAC 17551
|| || | ||||| | || || || | || || ||| || || | | |||
Sbjct 15368 GATGCTTCAGAATATTTATCTCCTGCGTTGTGTCAATTTGCAAGCGCAACCGAAACGTAC 15427
Query 17552 TTTAGACTGGACAACAAGTTCAGGAACCCCACGGTAGCCCCCACCCACGATGTCACCACC 17611
||| || | | || || || || || ||||| || || || |||||||| || ||
Sbjct 15428 TTTTCCCTAAGCGATAAATTTAGAAATCCGACGGTTGCGCCGACACACGATGTAACTACG 15487
Query 17612 GAGCGGTCCCAGCGGCTGCAGCTGCGCTTCGTACCGGTCATGCAAGAAGACGGCCAGTAC 17671
|| | || ||| | || || | | || || || | ||||||| |||||
Sbjct 15488 GAAAGATCGCAGAGACTACAATTAAGATTTGTTCCAGCGGAAAAAGAAGATACACAGTAT 15547
Query 17672 ACTTTCAAAACCCGCTTTCAGCTGTCCGTGGGCGACAACCGGGTGCTGGACATGGGCAGC 17731
||||| ||| |||| ||||| || |||| || || ||| | | | || |||| ||
Sbjct 15548 ACTTTTAAAGCCCGATTTCAACTCACCGTCGGTGATAACAGAATATTAGATTTGGGTAGT 15607
Query 17732 ACCTTCTTTGACATCCGCGGCACCCTCGACCGCGGCCCCTCTTTCAAGCCCTACAGCGGG 17791
| | ||||| || || | | ||| | || |||||||| || || ||||| ||
Sbjct 15608 AGTTATTTTGATATAAAGGGAAAGATAGACAGAGGTCCCTCTTTTAAACCTTACAGTGGC 15667
Query 17792 ACCGCCTACAA 17802
|| || |||||
Sbjct 15668 ACAGCATACAA 15678
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 104405510090232
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