Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dipodomys_20ordii_20[refseq_20GCF_5F000151885.1_202014-12-12] 65,193 sequences; 2,236,368,823 total letters Query= NC_030792.1 Length=32690 Score E Sequences producing significant alignments: (Bits) Value seq4931 522 6e-144 >seq4931 Length=27746 Score = 522 bits (578), Expect = 6e-144 Identities = 1286/1928 (67%), Gaps = 43/1928 (2%) Strand=Plus/Plus Query 18263 CTCGGTCAACAGGCCGCCCCCAACCGCCCTAACTACATTGGCTTTAGAGATAATTTCATA 18322 |||| ||| || ||| || ||| | || || || || || ||||| ||||| || || Sbjct 16127 CTCGCTCAGCAAAGCGCGCCAAACAGGCCAAATTATATAGGTTTTAGGGATAACTTTATC 16186 Query 18323 GGGCTCATGTATTATAACAGCAATGGCAATATGGGGGTACTGGCAGGACAATCATCTCAA 18382 ||| | |||| ||||||||| ||| ||||| |||| ||| | || || ||||| || || Sbjct 16187 GGGTTAATGTTTTATAACAGTAATAGCAATTTGGGTGTATTAGCCGGTCAATCGTCACAG 16246 Query 18383 CTTAATGCTGTTGTTGACTTGCAAGATAGAAATACTGAACTATCTTACCAGCTGTTGATG 18442 ||||||||||| | ||| | ||||| |||||||| ||| | || || ||||| || | Sbjct 16247 CTTAATGCTGTCATCGACCTTCAAGACAGAAATACAGAATTGTCATATCAGCTTATGTTA 16306 Query 18443 GATTCGCTCACA-GACAGACAGCGCTACTTTTCCATGTGGAACCAGGCAGTTGACAGCTA 18501 ||| | ||| || ||| || || | | ||||||| || || || || || Sbjct 16307 GATAATTT-ACACGATAGAACTCGATATTACAGCTTGTGGAATCAAGCCGTGGATTCATA 16365 Query 18502 TGACCCAGAAGTCAGGGTTATTGACAACCATGGGGTGGAGGATGAACTACCTAATTATTG 18561 ||| ||||| ||| | | || ||||| ||| || || || ||||| || |||||||| Sbjct 16366 TGATCCAGAGGTCCGAATCATAGACAATATTGGAGTAGAAGACGAACTTCCAAATTATTG 16425 Query 18562 CTACCCGCTGAGTGGCATGGGGTCGT-TTGAAGACA-TGCTTCCCATGAAAGTGAATGCT 18619 || ||| | ||| ||| || | |||| | | |||| || ||| || | Sbjct 16426 CTTTCCGTTATCTGG-ATGTTCTCCTATTGATTATACTGCTGTTAATCAAAATGGAC--- 16481 Query 18620 CAAAGGAATGCCTTTGAGGCCGACAACCAAAATCGAAACGGTCAGCATCGTATAGCCTTT 18679 ||| ||| | | ||| | || | || ||| || ||||| | Sbjct 16482 --AAGCAAT-----------CAATAACAATAACCCTG-CG--CAGGTTCTTATAGGCAAA 16525 Query 18680 GGCAATGTGGAAGCTATGGAAATCAACCTCAATGCCAACTTGTTTAAGGGGTTTCTCTAC 18739 || ||||| ||| |||||||||||| | |||||| ||| ||| ||||| || Sbjct 16526 GGAAATGTTGAATGCATGGAAATCAACATAGCGGCCAACCTGTGGAAGAATTTTCTGTAT 16585 Query 18740 TCTAACGTGGCCTTGTACCTGCCCGACGAACTCAAATACACACCCGAGTACGCGGTGGAG 18799 ||||| | || |||| |||||||| | | ||| ||| |||| | | ||| | Sbjct 16586 TCTAATATCGCGCTGTATCTGCCCGATAACTTTAAAACCACTCCCGCAAATGTGGTATTG 16645 Query 18800 CCCGCCAACCACAATACCTACGCTTACATGAACATGCGTTTGCCTGTCGCTAATCTGATT 18859 || | || || ||||||||||| || | || | || |||| | Sbjct 16646 CCGCAGGATCAGCGGCTATATGCTTACATGAATTCTCGCATTCCAGCCGGGGGTCTGGTA 16705 Query 18860 GACACCTATGTGAATATCGGTGCTAAATGGTCTCCTGATGTGATGGATACTGTTAACCCT 18919 || ||| | || || || | | ||||| ||||||||||| || ||||| || Sbjct 16706 GAGGATTATATCAACATAGGAACCAGGTGGTCAATAGATGTGATGGACACGGTTAATCCA 16765 Query 18920 TTCAACCACCACAGAAATGCCGGACTGCGGTACAGGTCGCAACTGCTGGGGAATGGGCGC 18979 || || || ||||||||| | || || |||||||||| || || | || ||||| ||| Sbjct 16766 TTTAATCATCACAGAAATACTGGTTTGAGGTACAGGTCTCAGCTATTAGGAAATGGTCGC 16825 Query 18980 TACTGTCAATTCCATATTCAGGTCCCTCAGAAGTTTTTTGCGATCAAAAATCTGCTCCTG 19039 || | || ||||||||||| || || ||||||||||| | |||| | |||| ||| Sbjct 16826 TATGCTTCCTTTCATATTCAGGTTCCGCAAAAGTTTTTTGCACTTAAAAGTTTGCTTCTG 16885 Query 19040 CTTCCGGGGACGTACACGTACGAGTGGTCTTTTAGAAAAGATGTGAACATGATCCTGCAG 19099 || ||||| |||||| ||||| |||||||||||||||||||| |||||||| ||||| Sbjct 16886 CTACCGGGATCGTACAGTTACGAATGGTCTTTTAGAAAAGATGTAAACATGATTTTGCAG 16945 Query 19100 AGCTCCCTGGGAAACGACCTCCGCGTGGACGGTGCCAGCATTAGCA-TACAGAGCATCAA 19158 || | || || || || || | | |||||| | | || || || | | ||||| | Sbjct 16946 AGTACTCTTGGCAATGATCTGAGGGAGGACGGAG-CGTCAGTAACATTTGACAGCATTAG 17004 Query 19159 CCTCTATGCGAGCTTCTTCCCCCTGGCGCACAACACAGCCTCCACTCTGGAAGCCATGTT 19218 ||| | ||| | ||||| || || | || ||||| || || ||||||||| | ||| | Sbjct 17005 CCTATTTGCTACTTTCTTTCCGATGTCTCATAACACTGCTTCTACTCTGGAAACTATGCT 17064 Query 19219 GCGAAACGACGTGAACGACCAGTCGTTCGCGGACTACCTGTCCGCCGCCAACATGCTGTA 19278 || || || || ||||| ||||| |||| ||||| || ||| || |||||||| || Sbjct 17065 TCGCAATGAGGTTAACGATCAGTCCTTCGGCGACTATCTTTCCAGCGTTAACATGCTTTA 17124 Query 19279 CCCCATTCCAGCCAACGCCACCAAC-GTGCCCATCTCCATCCCCGCACGGAACTGGGCCG 19337 | ||||| || | | |||| ||||| ||||| || || ||| |||| ||||| | Sbjct 17125 TGCTATTCC-TCCGCATCAAACAACAGTGCCTATCTCTATTCCAGCAAGGAATTGGGCGG 17183 Query 19338 GCTTCCGCGGCTGGAGCTTTACGCGCATCAAGCAGCACGAGACGCCGGCGCTGGGCTCTC 19397 ||| | || ||| ||||| | | || || || || || || | | |||||| Sbjct 17184 CCTTTAGAGGTTGGGCATTTACTAGACTAAAACAACAGGAAACACCAACCATTGGCTCTG 17243 Query 19398 CCTTCGACCCCTACTTTACCTACTCCGGCTCCATCCCCTACCTGGATGGCACCTTCTACC 19457 | || ||||| ||||||| ||||| ||||| ||||| || ||||| ||||| || Sbjct 17244 CATTTGACCCATACTTTAGGTACTCGGGCTCAATCCCGTATTGGGATGCGACCTTTTATT 17303 Query 19458 TCAGTCACACCTTCCGGCGAGTCTCCATCATGTTTGACTCCTCTGTCTCCTGGCCCGGAA 19517 | |||||| || | || |||| |||||| || || || ||||| |||| Sbjct 17304 TATCTCACACTATCAGAAAGGTGGCCATACAGTTTGATTCTTCAGTAAGTTGGCCTGGAA 17363 Query 19518 ACGACCGCTTGCTGACTCCTAACGAGTTCGAAATCAAGCGGTACGTGGACGGCGAGGGTT 19577 | ||| | | | | ||||| || || | || || | | ||||||| || || | Sbjct 17364 ATGACAGACTTTTAATACCTAATGAATTTCACATAAAAAGAGAGGTGGACGCGGAAGGCT 17423 Query 19578 ACAACATGGGCCAGTCCAACATGACCAAGGATTGGTTCATGGTTCAGATGCTGGCCCACT 19637 | |||| ||| || || || |||||||||| ||| |||| ||||| || |||| Sbjct 17424 ATAACACCTCTCAGAGCATAATTACTAAGGATTGGTATATGATTCAAATGCTCGCTCACT 17483 Query 19638 ATAACATCGGCTACCAGGGCTACTACCT-GCCAGAGAGTTACAAAGACCGCCTCTACTCC 19696 | || ||||| ||||| || | |||| ||| ||| ||| ||||| | | || ||| Sbjct 17484 ACAATATCGGATACCAAGGTTTTCACCTACCCACAGA-TTATAAAGATAGATTGTATTCC 17542 Query 19697 TTCCTGCGAAATTTCGAGCCCATGTGTCGGCAGATGGTGGAT--GTGCAAAACTACGAAC 19754 || | ||||||| || ||||||||| | || | |||||| | || || ||| Sbjct 17543 TTTTTAAGAAATTTTGAACCCATGTGTAGACAAGTTGTGGATCCTGGTAAGAC--GGAAA 17600 Query 19755 ACTACCACGCCGTCAGAGTGGCCGATCAGCATAACAACTCCGGCTTTGCCAGCGCCATAT 19814 | || || |||| | |||||||||| || || || ||| | |||| | Sbjct 17601 AATATCAACCCGTTGCTCTTAAATATCAGCATAATAATTCAGGTTTT--AAAAACCAT-T 17657 Query 19815 CCGGCTCGCACTCCAGAGAAGGGCACCCGTACCCCGCGAACTGGCCGTATCCCCTCATCG 19874 || | || |||| || || || ||| |||||||| | || ||||||| Sbjct 17658 ATGGACCCTTTGGGCGACAAGGCCATCCTTATCCCTGTAACTGGCCTTTCCCGCTCATCG 17717 Query 19875 GAGCTACCGCAGTGCCCTCCATCACGCAGAAAAAGTTCCTGTGTGACCGCACGCTCTGGC 19934 ||| |||| |||| || |||| ||| || | |||||| | || || ||| Sbjct 17718 GAGAACAGGCAGGTAAAACCATTACTCAGAGAAAATTTTTATGTGACAGAACACTGTGGA 17777 Query 19935 GCATTCCCTTCTCCTCCAACTTCATGTCTATGGGATCTCTCACCGACCTGGGTCAGAACC 19994 | ||||| |||||||||||||| ||||| |||||| | || || || ||||| || || Sbjct 17778 GGATTCCGTTCTCCTCCAACTTTATGTCCATGGGAACACTAACAGATCTGGGACAAAATT 17837 Query 19995 TCCTGTACGCTAACTCCGCCCACGCGCTCGACATGACCTTCGAGGTGGATGACATGAATG 20054 | || || || || || || || || | |||||||| |||| || ||| ||| | | Sbjct 17838 TGCTATATGCAAATTCAGCTCATGCTTTAGACATGACAGTCGAAGTAGATTCAATGGAGG 17897 Query 20055 AGCCCAC---CCTCTTGTATGTTTTGTTCGAAGTGTTTGACGTGGCTCGCGTGCATCAAC 20111 | || || ||| || ||| | || ||||| |||||| || | |||||||| | Sbjct 17898 AACCAACTTATCTCATG-ATG--CTATTTGAAGTATTTGACATGTGCAGAGTGCATCAGC 17954 Query 20112 CGCACCGCGGGGTCATTGAGGTGGTGTACCTGAGAACGCCCTTCTCTGCCGGAAACGCAA 20171 | || || || ||||| || || | || || ||||| ||||| || || || ||||| Sbjct 17955 CTCAACGAGGTGTCATAGAAGTTATTTATCTAAGAACCCCCTTTTCGGCAGGTAACGCCG 18014 Query 20172 CCACATAA 20179 | |||||| Sbjct 18015 CAACATAA 18022 Score = 95.1 bits (104), Expect = 3e-15 Identities = 473/737 (64%), Gaps = 26/737 (4%) Strand=Plus/Plus Query 5859 tttttttGTTGTCCAGCTTGGTGGCGAACGAGCCGTAGAGGGCGTTGGAGAGCAGCTTTG 5918 ||||||| || || | | ||||||| || || ||||| || ||||| || | ||| || | Sbjct 5593 TTTTTTTATTATCTAACCTGGTGGCAAAGGAACCGTACAGTGCGTTTGACAACAGTTTAG 5652 Query 5919 CGATGCTGCGCA------TGGTTTGGTTCTTTTCTCGGTCGGCCTTCTCTTTGGCCGCGA 5972 ||||||| ||| || | ||||| ||||| || |||||| |||| ||||| | Sbjct 5653 CGATGCTTCGCTGTGTGCTGTTGTGGTTTTTTTC-CG--CGGCCT---CTTTTGCCGCTA 5706 Query 5973 TGTTGAGTTGC-ACGTACTCTTTGGCTATGCACTTCCATTCTGGAAACACGGTGGTCTTT 6031 | || ||| || ||||| ||| | || | ||| ||||| | ||| || || Sbjct 5707 TATT-AGTGGCTACGTATTCTCTTGCCACGCAATTCCACTGCTCAAATACTGTAACTCGC 5765 Query 6032 TCGTCCGGCAGGATGGTGACGCTCCAGCCGCGGTTGTGTAGCGTGATCACATCGATAGAG 6091 || || || | | | | |||| || || || || | || || ||||||| || Sbjct 5766 TCATCTGGGACCAACCTAATCTTCCATCCTCGATTATGCAAAGTAATGGCATCGATGGAC 5825 Query 6092 GTTGCTATCTCGCCGCGCAGCGGCTCGTTGGTCCAGCACAGGCGCCCGCCCTTGCGCGAG 6151 || || ||||| | | || || |||||||| || |||||||| || | ||| Sbjct 5826 GTGCATACTTCGCCTCTTAAATTTTCATTTGTCCAGCAAAGACGCCCGCCTTTTCTCGAA 5885 Query 6152 CAAAATGGGGGCAGGACGTCTA-GCATCTCGTCGTCCGGAGGGTCGGCGTCGATGGTGAA 6210 |||||||| || | || |||| | || || ||| | || | ||| || || || | Sbjct 5886 CAAAATGGCGGTAAAACATCTAAGTAT-TCTTCGGCAGGGGCGTCAGCATCAATTACAAC 5944 Query 6211 GACCGCGGGCAGGAGGTCTGGGTCGAAGTACCCGAGAGGCCCTCCGGCTTTCATCTTGCG 6270 | || || | ||| | ||||| || || | | |||| || || ||| Sbjct 5945 AATGGCCGGTAACAGGGCAGGGTCAAAATAGGAAATTTTGTCACCGG-TTGCAAA--GCG 6001 Query 6271 TTC-GTAGAC-GCT-GACGGCCACCGCGCGGTCGTATGGGTTGAGCGGGTACCCGGCGGG 6327 || | | || | | || |||| | ||| | || || || || || ||| Sbjct 6002 TTTTGAATACTGATAGAGAGCCAAGTTTCTGTCAAAGGGATTAAGTGGTGGGCCAAAGGG 6061 Query 6328 AAAGGGGTGTGTGAGCGCGCTGGCATACATGCCGCAGATGTCGTAGACGTAGACGGGCTC 6387 | ||| || || | |||||||||||||| ||| | || || || || || | || || Sbjct 6062 CATGGGATGCGTTAATGCGCTGGCATACATTCCGGAAATATCATAAACATAAATAGGTTC 6121 Query 6388 TGAGAGCACGCCTATGTAAGTGGGGTAGCATCGGCCGCCGCGGATGCTGGCGCGCACGTA 6447 | || |||||||||||||||||||| || || || | |||||| | | || | Sbjct 6122 CTCAAAAACACCTATGTAAGTGGGGTAGCACCGTCCCCCTCTGATGCTTTCTCTTACAAA 6181 Query 6448 CTCGTACATCTCGTGGGACGGGGCCAGGAGGGCCTCC--CCCAGGTTGTTTTTGTCCGGT 6505 || || || ||||| ||||||||||| || | | | | | | ||||||| | | Sbjct 6182 ATCATAAATGTCGTGTGACGGGGCCAGAAGAGTATTCGACAAATGATGTTTTTCTAACTT 6241 Query 6506 CGCTCGGCCCTGAATAGGACTTGCTTAAAAATGGCGTGGGAATTGGAACTGATGGTGGGG 6565 | | | | || | | |||||||||||| || ||||| || || || || || Sbjct 6242 --TTGAGTCTTAAACACCAGTTGCTTAAAAATTGCAAAAGAATTTGAGCTAATTGTTGGA 6299 Query 6566 CGCTGAAAGACGTTGAA 6582 |||||||| || || || Sbjct 6300 CGCTGAAAAACATTAAA 6316 Score = 93.3 bits (102), Expect = 9e-15 Identities = 243/371 (65%), Gaps = 0/371 (0%) Strand=Plus/Plus Query 17432 CCGAAGATGGCCACCCCGGCGATGCTTCCACAATGGTCCTACATGCACATTGCGGGCCAG 17491 |||||||||||||| || ||||||| || |||||||| ||| | || || || || || Sbjct 15308 CCGAAGATGGCCACTCCCTCGATGCTCCCGCAATGGTCTTACTTACATATCGCAGGACAA 15367 Query 17492 GACGCCGCGGAATACCTGTCGCCCGCTCTCGTCCAGTTCGCACAGGCCACGAATTCCTAC 17551 || || | ||||| | || || || | || || ||| || || | | ||| Sbjct 15368 GATGCTTCAGAATATTTATCTCCTGCGTTGTGTCAATTTGCAAGCGCAACCGAAACGTAC 15427 Query 17552 TTTAGACTGGACAACAAGTTCAGGAACCCCACGGTAGCCCCCACCCACGATGTCACCACC 17611 ||| || | | || || || || || ||||| || || || |||||||| || || Sbjct 15428 TTTTCCCTAAGCGATAAATTTAGAAATCCGACGGTTGCGCCGACACACGATGTAACTACG 15487 Query 17612 GAGCGGTCCCAGCGGCTGCAGCTGCGCTTCGTACCGGTCATGCAAGAAGACGGCCAGTAC 17671 || | || ||| | || || | | || || || | ||||||| ||||| Sbjct 15488 GAAAGATCGCAGAGACTACAATTAAGATTTGTTCCAGCGGAAAAAGAAGATACACAGTAT 15547 Query 17672 ACTTTCAAAACCCGCTTTCAGCTGTCCGTGGGCGACAACCGGGTGCTGGACATGGGCAGC 17731 ||||| ||| |||| ||||| || |||| || || ||| | | | || |||| || Sbjct 15548 ACTTTTAAAGCCCGATTTCAACTCACCGTCGGTGATAACAGAATATTAGATTTGGGTAGT 15607 Query 17732 ACCTTCTTTGACATCCGCGGCACCCTCGACCGCGGCCCCTCTTTCAAGCCCTACAGCGGG 17791 | | ||||| || || | | ||| | || |||||||| || || ||||| || Sbjct 15608 AGTTATTTTGATATAAAGGGAAAGATAGACAGAGGTCCCTCTTTTAAACCTTACAGTGGC 15667 Query 17792 ACCGCCTACAA 17802 || || ||||| Sbjct 15668 ACAGCATACAA 15678 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 104405510090232