Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dipodomys_20ordii_20[refseq_20GCF_5F000151885.1_202014-12-12] 65,193 sequences; 2,236,368,823 total letters Query= NC_030842.1 Length=115510 Score E Sequences producing significant alignments: (Bits) Value seq25 129 4e-25 >seq25 Length=23434732 Score = 129 bits (142), Expect = 4e-25 Identities = 127/164 (77%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 27208 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGT 27267 || || |||| ||| || |||||||| ||||| || | ||||||||| ||||| ||||| Sbjct 21720715 AGGCCTGTGATGTGTGCAATCATGTAGGTGAGCAGGGCGTAGCTGGCAATGTTGAAGGGC 21720656 Query 27268 ACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCATCGCTT 27327 || || || |||||||| || ||||||||||| ||||| || || ||||| |||| Sbjct 21720655 ACACCCAGGCCCATGTCTCCAGACCTCTGGTACAGCTGGCAGGACAGCTCCCCATTCACC 21720596 Query 27328 ACGTAAAACTGACATATGGCGTGGCACGGAGGAAGAGCCATGAG 27371 || || ||||| || | ||| ||||| ||||| || ||||| || Sbjct 21720595 ACATAGAACTGGCAGAGGGCATGGCAGGGAGGCAGCGCCATCAG 21720552 Score = 109 bits (120), Expect = 4e-19 Identities = 125/168 (74%), Gaps = 0/168 (0%) Strand=Plus/Minus Query 27489 CATGTCCGTGTACTCTGCTCCGAAATGCCTCCATTGGAACCCGTACACCGGTCCCAGGTC 27548 ||| || |||| |||||||| ||||||||||| ||||| || || || || |||||||| Sbjct 21716023 CATATCTTTGTAGTCTGCTCCAAAATGCCTCCACTGGAAGCCATAAACTGGGCCCAGGTC 21715964 Query 27549 TCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTC 27608 || |||| | | || ||| |||||||||| |||| ||| || ||||| || Sbjct 21715963 CCCTTCTTTTCGGGCAGAAAATCCCAGGCTGTCCAAAAAATCTCGGGATCCATTGGCATC 21715904 Query 27609 CCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCC 27656 |||||| || || ||||| || || ||||||| ||||||||| || Sbjct 21715903 CCAGATTTTCACTCCCTTGGAAGACAGTTCTTTGGCGTTTGTGGATCC 21715856 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 369213611864783