Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Dipodomys_20ordii_20[refseq_20GCF_5F000151885.1_202014-12-12]
65,193 sequences; 2,236,368,823 total letters
Query= NC_030842.1
Length=115510
Score E
Sequences producing significant alignments: (Bits) Value
seq25 129 4e-25
>seq25
Length=23434732
Score = 129 bits (142), Expect = 4e-25
Identities = 127/164 (77%), Gaps = 0/164 (0%)
Strand=Plus/Minus
Query 27208 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGT 27267
|| || |||| ||| || |||||||| ||||| || | ||||||||| ||||| |||||
Sbjct 21720715 AGGCCTGTGATGTGTGCAATCATGTAGGTGAGCAGGGCGTAGCTGGCAATGTTGAAGGGC 21720656
Query 27268 ACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCATCGCTT 27327
|| || || |||||||| || ||||||||||| ||||| || || ||||| ||||
Sbjct 21720655 ACACCCAGGCCCATGTCTCCAGACCTCTGGTACAGCTGGCAGGACAGCTCCCCATTCACC 21720596
Query 27328 ACGTAAAACTGACATATGGCGTGGCACGGAGGAAGAGCCATGAG 27371
|| || ||||| || | ||| ||||| ||||| || ||||| ||
Sbjct 21720595 ACATAGAACTGGCAGAGGGCATGGCAGGGAGGCAGCGCCATCAG 21720552
Score = 109 bits (120), Expect = 4e-19
Identities = 125/168 (74%), Gaps = 0/168 (0%)
Strand=Plus/Minus
Query 27489 CATGTCCGTGTACTCTGCTCCGAAATGCCTCCATTGGAACCCGTACACCGGTCCCAGGTC 27548
||| || |||| |||||||| ||||||||||| ||||| || || || || ||||||||
Sbjct 21716023 CATATCTTTGTAGTCTGCTCCAAAATGCCTCCACTGGAAGCCATAAACTGGGCCCAGGTC 21715964
Query 27549 TCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTC 27608
|| |||| | | || ||| |||||||||| |||| ||| || ||||| ||
Sbjct 21715963 CCCTTCTTTTCGGGCAGAAAATCCCAGGCTGTCCAAAAAATCTCGGGATCCATTGGCATC 21715904
Query 27609 CCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCC 27656
|||||| || || ||||| || || ||||||| ||||||||| ||
Sbjct 21715903 CCAGATTTTCACTCCCTTGGAAGACAGTTCTTTGGCGTTTGTGGATCC 21715856
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 369213611864783
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |