Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Dipodomys_20ordii_20[refseq_20GCF_5F000151885.1_202014-12-12]
65,193 sequences; 2,236,368,823 total letters
Query= NC_031033.1
Length=217124
Score E
Sequences producing significant alignments: (Bits) Value
seq22 138 2e-27
seq190 132 7e-26
seq83 118 1e-21
seq113 105 9e-18
seq20 98.7 1e-15
seq17 96.9 5e-15
>seq22
Length=17426531
Score = 138 bits (152), Expect = 2e-27
Identities = 133/171 (78%), Gaps = 0/171 (0%)
Strand=Plus/Plus
Query 76849 TCCATCCGTAGAAATGCATGCTTGTCAGTTTGGAATAACTAGGATCGGCTATATGAATAT 76908
|||| |||||||| ||||| || || |||||| ||| |||| || || ||||| || |
Sbjct 1394320 TCCAGCCGTAGAAGTGCATACTAGTGAGTTTGCCATAGTTAGGCTCTGCAATATGGATGT 1394379
Query 76909 TCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTATAATGGTCT 76968
||| |||||||||||||| |||||||| ||||| || |||||||| || | || || |
Sbjct 1394380 TCAAAGACTGACTTTGATCAATGAAAGCACCTCTCTCGGCCGCCATCTTAAGAACAGTTT 1394439
Query 76969 TTTGAGGAATTTCCCAAATAGTTTTGAAAACTTGTTTGATATCATCTGGAA 77019
| |||| |||||||| | ||| || ||| |||||| | |||||| ||||
Sbjct 1394440 TCTGAGAGATTTCCCACACAGTCTTATAAAGTTGTTTCAAATCATCAGGAA 1394490
Score = 109 bits (120), Expect = 8e-19
Identities = 104/133 (78%), Gaps = 0/133 (0%)
Strand=Plus/Plus
Query 77127 TGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 77186
||||||||||| ||||| ||||| ||||| || || ||||||||||| ||||| | ||
Sbjct 1398048 TGAAATTCTCCTGACAAGACTCTGCGAGTATAGATGTTACTGGTATAAGGTTCAATGGAC 1398107
Query 77187 TCATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGCATAGGTGCCACCAATAAACTA 77246
||||| ||||||| || |||||||| |||||||| ||||| || || | | | ||
Sbjct 1398108 TCATTATTTCCCAGGATCTGAGCAGTTGAAGCAGTAGGCATCGGGGCAAGAAGCAGGCTG 1398167
Query 77247 TTTCTGAGACCAT 77259
||||| | |||||
Sbjct 1398168 TTTCTTATACCAT 1398180
Score = 102 bits (112), Expect = 1e-16
Identities = 143/198 (72%), Gaps = 2/198 (1%)
Strand=Plus/Plus
Query 77355 GATCCATTATATGTTTCATAAGGTCCTT-CTGTTTCAGCTAGTTCACAACTCGCTTCCAA 77413
|| || | ||| |||||||| || || | || || ||||| |||||||| |||||||
Sbjct 1401754 GAGCCTTCATAGGTTTCATACGGGCCATACTCCTTG-GCTAGGTCACAACTGGCTTCCAG 1401812
Query 77414 TGCTCCGTAATAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCAATACTATC 77473
|| || |||||||| ||||| || || | |||||| | || ||||| ||| ||
Sbjct 1401813 GGCCCCATAATAAATAGTTTCAAAGATTTGCTTATTTAATAACTGAGCTTCTGGACTCTC 1401872
Query 77474 AAACGGATAATGTAAAAGAATAAAGGCATCTGCTAATCCCTGAACTCCAATACCAATAGG 77533
||| || || | || |||||||||||||||| || ||||| ||||| ||||| ||
Sbjct 1401873 AAAAGGGTATCTCATCAGGATAAAGGCATCTGCTAGACCTTGAACCCCAATTCCAATGGG 1401932
Query 77534 TCTATGTCTCTTATTGGA 77551
| ||| | ||||| ||
Sbjct 1401933 GCGATGGCGTTTATTTGA 1401950
Score = 98.7 bits (108), Expect = 1e-15
Identities = 102/134 (76%), Gaps = 0/134 (0%)
Strand=Plus/Plus
Query 78003 ACTCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATGT 78062
||||||||||| || ||||| || ||||| ||||||| || ||||||| || | ||
Sbjct 1409101 ACTCGTTTCATGAAAAGATCTGGAATCCAAAGAGCAAAGAAAAGATCTCTGGCACGCTGC 1409160
Query 78063 TCTTCATTTCCTGTATTCTTTTTAAGATCGAGAAACTCCATAATATCAGAATGCCATGGT 78122
||||| |||||||| ||||| || | ||| || || || | || || ||||||| |||
Sbjct 1409161 TCTTCCTTTCCTGTGTTCTTCTTTAAATCAAGGAATTCAAAGATGTCTAAATGCCAAGGT 1409220
Query 78123 TCTAGATATATTGC 78136
||||| || || ||
Sbjct 1409221 TCTAGGTAAATAGC 1409234
Score = 95.1 bits (104), Expect = 2e-14
Identities = 106/142 (75%), Gaps = 0/142 (0%)
Strand=Plus/Plus
Query 78398 AGTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATT 78457
||| || ||||| || | || || || ||||| || ||||| || || ||||| || ||
Sbjct 1417966 AGTGCCAGCATTGAAGAGAGTAGGTGAGGCATGAGTGAACCACTTCTCTGAAAGAAGGTT 1418025
Query 78458 GTATGTTTCAATAGCTGATTCTATGTCCCATTGATGAATTCCTACCGCTACACGCATCAA 78517
||||||||| || || | || ||||| || ||||| || || | || | ||||||
Sbjct 1418026 GTATGTTTCGATTGCAGCATCAATGTCTTCTTTGTGAATCCCCACAGACACCCTCATCAA 1418085
Query 78518 CATATGCTGAGGTCTTTCAACC 78539
||||||||| ||||||||| ||
Sbjct 1418086 CATATGCTGTGGTCTTTCAGCC 1418107
Score = 86.0 bits (94), Expect = 9e-12
Identities = 58/65 (89%), Gaps = 0/65 (0%)
Strand=Plus/Plus
Query 77925 TCAAATTCATCTCCCCAAACATCATCCAATCCAGGGCATTCATTTGGGCACATCAATGAC 77984
|||||||| ||||||||||| ||||||| ||||| ||||||||||| |||||||| |||
Sbjct 1408333 TCAAATTCCTCTCCCCAAACTTCATCCAGACCAGGACATTCATTTGGACACATCAAAGAC 1408392
Query 77985 CAGTC 77989
|||||
Sbjct 1408393 CAGTC 1408397
>seq190
Length=3085523
Score = 132 bits (146), Expect = 7e-26
Identities = 251/360 (70%), Gaps = 21/360 (6%)
Strand=Plus/Plus
Query 45876 TCCAGTGGATCCAAATCCT--TGAGCGTCTCTTTCAGTACCATCTAGAGA-TTGCACTTC 45932
||||||||| || || ||| ||| | | ||||||||| |||| | ||| ||| |||||
Sbjct 695227 TCCAGTGGAACCCAAACCTCCTGAAC--CCCTTTCAGTATCATCCA-AGACTTGAACTTC 695283
Query 45933 CTTCAGATCAGGATAATATATACGTTGATAGATTAGTTGAGCTATTCTATCACCCGTATT 45992
| | || |||||| | | ||| | | || || ||||| |||| ||||||| | ||
Sbjct 695284 TTCAATTTCTGGATAAAAAACCTGTTCACAAATGAGCTGAGCAATTCCATCACCCTTTTT 695343
Query 45993 TATTTCAAATATATCTTTTCCATTATTGATCAGAATGACTCCAATTGTCCCTCTATAATC 46052
| ||||||| | ||||| || ||||| || || || |||| | || ||||||||
Sbjct 695344 CACTTCAAATTTCTCTTTGTCAAAATTGAACAATATAACACCAACATTTCCCCTATAATC 695403
Query 46053 TTCATCTATTACTCCCCCTCCCACATCGAT---ACCTTTTAGAGACAGTCCAGATCTAGG 46109
||||||||| || || |||| |||||||| |||| || || ||||| | ||
Sbjct 695404 TTCATCTATGACACCAGCTCCTACATCGATGAAGTGTTTTGCAGCCAAGCCAGAACGTGG 695463
Query 46110 AGCTATTCTTCCATA----ACAGAATTTGGGCATAGACATCCGAATATCTGTTTTAATCA 46165
||||| ||||||||| ||||| | | || ||| |||| || || || | ||
Sbjct 695464 AGCTACTCTTCCATAGCACCCAGAA----GAAAGAGCTATCTGAATGTCCGTCTTCA-CA 695518
Query 46166 ATCTCCTTTCTCC--AGGAGGGATAGTATAGTCGTACGCACTGTATAAATCATATCCTGC 46223
| |||||||| ||| || || ||||| || || ||||||| | ||||| |||||
Sbjct 695519 A-GGGCTTTCTCCATAGGTGGTATTGTATAATCATAGGCACTGTCCAGGTCATAGCCTGC 695577
>seq83
Length=9551901
Score = 118 bits (130), Expect = 1e-21
Identities = 239/345 (69%), Gaps = 21/345 (6%)
Strand=Plus/Minus
Query 45876 TCCAGTGGATCCAAATCCT--TGAGCGTCTCTTTCAGTACCATCTAGAGA-TTGCACTTC 45932
|||||| || || || ||| ||| | | | ||||||| |||| | ||| ||| |||||
Sbjct 3112018 TCCAGTAGAACCCAAACCTCCTGAAC--CCCATTCAGTATCATCCA-AGACTTGAACTTC 3111962
Query 45933 CTTCAGATCAGGATAATATATACGTTGATAGATTAGTTGAGCTATTCTATCACCCGTATT 45992
| | || |||||| | || | | | || || ||||| ||||||| |||| | ||
Sbjct 3111961 TTCAATTTCTGGATAAAAAATCTGCCCACAAATGAGCTGAGCAATTCTATTACCCTTTTT 3111902
Query 45993 TATTTCAAATATATCTTTTCCATTATTGATCAGAATGACTCCAATTGTCCCTCTATAATC 46052
| |||||| | ||||| ||| ||||| || || || |||| | |||| ||||||||
Sbjct 3111901 CACTTCAAACTTCTCTTTGCCAAAATTGAACAATATAACACCAACTTTCCCCCTATAATC 3111842
Query 46053 TTCATCTATTACTCCCCCTCCCACATCGAT---ACCTTTTAGAGACAGTCCAGATCTAGG 46109
||||| ||| || || |||| |||||||| |||| || || ||||| | ||
Sbjct 3111841 TTCATATATGACACCAGCTCCTACATCGATGAAGTGTTTTGAAGCCAAGCCAGAACGTGG 3111782
Query 46110 AGCTATTCTTCCATA----ACAGAATTTGGGCATAGACATCCGAATATCTGTTTTAATCA 46165
||||| ||||||||| ||||| || | || ||| |||| || || || | ||
Sbjct 3111781 AGCTACTCTTCCATAGCACCCAGAA----GGAAGAGCTATCTGAATGTCCGTCTTCA-CA 3111727
Query 46166 ATCTCCTTTCTCC--AGGAGGGATAGTATAGTCGTACGCACTGTA 46208
| |||||||| ||| || || ||| | || || ||||||||
Sbjct 3111726 A-GGGCTTTCTCCATAGGTGGTATTGTACAATCATAGGCACTGTA 3111683
>seq113
Length=6198913
Score = 105 bits (116), Expect = 9e-18
Identities = 247/362 (68%), Gaps = 22/362 (6%)
Strand=Plus/Plus
Query 45878 CAGTGGATCCAAATCCT--TGAGCGTCTCTTTCAGTACCATCTAGAGA-TTGCACTTCCT 45934
|||| || ||||| ||| ||| | | ||||||||| |||| | ||| ||| ||||| |
Sbjct 4701933 CAGTAGAACCAAAACCTCCTGAAC--CCCTTTCAGTATCATCCA-AGACTTGAACTTCTT 4701989
Query 45935 TCAGATCAGGATAATATATAC-GTTGATAGATTAGTTGAGCTATTCTATCACCCGTATTT 45993
| || |||||| | | | | | | || || ||||| |||| ||||||| | ||
Sbjct 4701990 CAATTTCTGGATAAAAAAATCTGCTCACGAATGAGCTGAGCAATTCGATCACCCTTTTTC 4702049
Query 45994 ATTTCAAATATATCTTTTCCATTATTGATCAGAATGACTCCAATTGTCCCTCTATAATCT 46053
| |||||| | ||||| ||| ||||| || || || |||| | || |||||||||
Sbjct 4702050 ACTTCAAACTTCTCTTTGCCAAAATTGAGCAATATAACACCAAAATTTCCCCTATAATCT 4702109
Query 46054 TCATCTATTACTCCCCCTCCCACATC---GATACCTTTTAGAGACAGTCCAGATCTAGGA 46110
|||||||| || || |||| ||||| || |||| || || ||| | | |||
Sbjct 4702110 TCATCTATGACACCAGCTCCTACATCAATGAAGTGTTTTGCAGCCAAGCCAAAACGTGGA 4702169
Query 46111 GCTATTCTTCCATA----ACAGAATTTGGGCATAGACATCCGAATATCTGTTTTAATCAA 46166
|||| ||||||||| ||||| | | || ||| |||| || |||| | |||
Sbjct 4702170 GCTACTCTTCCATAGCACCCAGAA----AGAAGAGCTATCTGAATGTCCATTTTCA-CAA 4702224
Query 46167 TCTCCTTTCTC--CAGGAGGGATAGTATAGTCGTACGCACTGTATAAATCATATCCTGCT 46224
||||||| |||| || || |||| || || |||||||| | || || |||||
Sbjct 4702225 -GGGCTTTCTCCACAGGTGGTATTATATAATCATAGGCACTGTACAGGTCGTAGCCTGCA 4702283
Query 46225 GC 46226
||
Sbjct 4702284 GC 4702285
>seq20
Length=25211774
Score = 98.7 bits (108), Expect = 1e-15
Identities = 93/119 (78%), Gaps = 0/119 (0%)
Strand=Plus/Plus
Query 48165 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGGGCATTAGTCCACGTTTTTTG 48224
|| ||||| ||||| | || || ||||| ||||| || ||||| ||||| || || ||
Sbjct 21308483 TCGTCTCTGCTAATAAGCTCATTGGAAAACGTGAGGCCAGGCATAAGTCCTCGCTTCTTC 21308542
Query 48225 AGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACGGCCGCAAATGC 48283
||||| ||||| | ||||||||| ||||||||||| || || || || || ||||| ||
Sbjct 21308543 AGCCAGAATATCGACGCGAAAGAACCAGAAAAGAAGATTCCCTCCACCGCGGCAAAGGC 21308601
Score = 96.9 bits (106), Expect = 5e-15
Identities = 109/144 (76%), Gaps = 4/144 (3%)
Strand=Plus/Plus
Query 47790 GTTCTTTAA-AAGTCAACATCTAAAGAAAAATGATTATCTTCTTGA---GACATAACTCC 47845
|||| || | |||||| |||| || | ||| ||| ||| | || ||||| |||||
Sbjct 21306511 GTTCATTCAGAAGTCAGCATCCAAGGTGAAAGAATTCTCTGTTGGACTGGACATCACTCC 21306570
Query 47846 CATTTTTTGATATTCACCCACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATAT 47905
|||| | ||||| || || || | ||||| || || ||||| || ||||||| ||| ||
Sbjct 21306571 CATTCTCTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTCCCTTCCAGTGAAAT 21306630
Query 47906 ATTTTCCATAAAATCAAATGGATT 47929
||| ||||| ||||||||||||||
Sbjct 21306631 ATTCTCCATGAAATCAAATGGATT 21306654
>seq17
Length=26966924
Score = 96.9 bits (106), Expect = 5e-15
Identities = 94/121 (78%), Gaps = 0/121 (0%)
Strand=Plus/Minus
Query 48163 CTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGGGCATTAGTCCACGTTTTT 48222
|||||||||| || || | ||| || ||||| ||||| || ||||| || || | || |
Sbjct 9451004 CTTCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGTCCAGGCATGAGGCCTCTCTTCT 9450945
Query 48223 TGAGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACGGCCGCAAATG 48282
| ||||| ||||| || || ||||||||||| ||||| | |||||||| || ||||| |
Sbjct 9450944 TTAGCCAGAATATAGCAGCAAAAGATCCAGAGAAGAAAACTCCTTCTACTGCAGCAAAGG 9450885
Query 48283 C 48283
|
Sbjct 9450884 C 9450884
Score = 84.2 bits (92), Expect = 3e-11
Identities = 85/111 (77%), Gaps = 0/111 (0%)
Strand=Plus/Minus
Query 48523 CCAAATTCTCATTTACTATTCCATCACTAGCAGCAAAAAATGCTAATACATGTTTAATAA 48582
||||||| |||||||| |||||||||||||| |||||||| ||||| | || || |
Sbjct 9446976 CCAAATTTTCATTTACAATTCCATCACTAGCTGCAAAAAAGGCTAAGATGTGAGAGATGA 9446917
Query 48583 AATATTTTTCGTTGGAAGTCAGTTTATTCCAGTCATTGATATCTTTTGATA 48633
|||| || || | ||| | ||||| ||||||| | | ||| |||||||
Sbjct 9446916 AATACTTCTCATCGGATTTAAGTTTGTTCCAGTGAGGAAGATCCTTTGATA 9446866
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 694102705711520
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |