Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dipodomys_20ordii_20[refseq_20GCF_5F000151885.1_202014-12-12] 65,193 sequences; 2,236,368,823 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq22 138 2e-27 seq190 132 7e-26 seq83 118 1e-21 seq113 105 9e-18 seq20 98.7 1e-15 seq17 96.9 5e-15 >seq22 Length=17426531 Score = 138 bits (152), Expect = 2e-27 Identities = 133/171 (78%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 76849 TCCATCCGTAGAAATGCATGCTTGTCAGTTTGGAATAACTAGGATCGGCTATATGAATAT 76908 |||| |||||||| ||||| || || |||||| ||| |||| || || ||||| || | Sbjct 1394320 TCCAGCCGTAGAAGTGCATACTAGTGAGTTTGCCATAGTTAGGCTCTGCAATATGGATGT 1394379 Query 76909 TCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTATAATGGTCT 76968 ||| |||||||||||||| |||||||| ||||| || |||||||| || | || || | Sbjct 1394380 TCAAAGACTGACTTTGATCAATGAAAGCACCTCTCTCGGCCGCCATCTTAAGAACAGTTT 1394439 Query 76969 TTTGAGGAATTTCCCAAATAGTTTTGAAAACTTGTTTGATATCATCTGGAA 77019 | |||| |||||||| | ||| || ||| |||||| | |||||| |||| Sbjct 1394440 TCTGAGAGATTTCCCACACAGTCTTATAAAGTTGTTTCAAATCATCAGGAA 1394490 Score = 109 bits (120), Expect = 8e-19 Identities = 104/133 (78%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 77127 TGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 77186 ||||||||||| ||||| ||||| ||||| || || ||||||||||| ||||| | || Sbjct 1398048 TGAAATTCTCCTGACAAGACTCTGCGAGTATAGATGTTACTGGTATAAGGTTCAATGGAC 1398107 Query 77187 TCATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGCATAGGTGCCACCAATAAACTA 77246 ||||| ||||||| || |||||||| |||||||| ||||| || || | | | || Sbjct 1398108 TCATTATTTCCCAGGATCTGAGCAGTTGAAGCAGTAGGCATCGGGGCAAGAAGCAGGCTG 1398167 Query 77247 TTTCTGAGACCAT 77259 ||||| | ||||| Sbjct 1398168 TTTCTTATACCAT 1398180 Score = 102 bits (112), Expect = 1e-16 Identities = 143/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 77355 GATCCATTATATGTTTCATAAGGTCCTT-CTGTTTCAGCTAGTTCACAACTCGCTTCCAA 77413 || || | ||| |||||||| || || | || || ||||| |||||||| ||||||| Sbjct 1401754 GAGCCTTCATAGGTTTCATACGGGCCATACTCCTTG-GCTAGGTCACAACTGGCTTCCAG 1401812 Query 77414 TGCTCCGTAATAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCAATACTATC 77473 || || |||||||| ||||| || || | |||||| | || ||||| ||| || Sbjct 1401813 GGCCCCATAATAAATAGTTTCAAAGATTTGCTTATTTAATAACTGAGCTTCTGGACTCTC 1401872 Query 77474 AAACGGATAATGTAAAAGAATAAAGGCATCTGCTAATCCCTGAACTCCAATACCAATAGG 77533 ||| || || | || |||||||||||||||| || ||||| ||||| ||||| || Sbjct 1401873 AAAAGGGTATCTCATCAGGATAAAGGCATCTGCTAGACCTTGAACCCCAATTCCAATGGG 1401932 Query 77534 TCTATGTCTCTTATTGGA 77551 | ||| | ||||| || Sbjct 1401933 GCGATGGCGTTTATTTGA 1401950 Score = 98.7 bits (108), Expect = 1e-15 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 78003 ACTCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATGT 78062 ||||||||||| || ||||| || ||||| ||||||| || ||||||| || | || Sbjct 1409101 ACTCGTTTCATGAAAAGATCTGGAATCCAAAGAGCAAAGAAAAGATCTCTGGCACGCTGC 1409160 Query 78063 TCTTCATTTCCTGTATTCTTTTTAAGATCGAGAAACTCCATAATATCAGAATGCCATGGT 78122 ||||| |||||||| ||||| || | ||| || || || | || || ||||||| ||| Sbjct 1409161 TCTTCCTTTCCTGTGTTCTTCTTTAAATCAAGGAATTCAAAGATGTCTAAATGCCAAGGT 1409220 Query 78123 TCTAGATATATTGC 78136 ||||| || || || Sbjct 1409221 TCTAGGTAAATAGC 1409234 Score = 95.1 bits (104), Expect = 2e-14 Identities = 106/142 (75%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 78398 AGTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATT 78457 ||| || ||||| || | || || || ||||| || ||||| || || ||||| || || Sbjct 1417966 AGTGCCAGCATTGAAGAGAGTAGGTGAGGCATGAGTGAACCACTTCTCTGAAAGAAGGTT 1418025 Query 78458 GTATGTTTCAATAGCTGATTCTATGTCCCATTGATGAATTCCTACCGCTACACGCATCAA 78517 ||||||||| || || | || ||||| || ||||| || || | || | |||||| Sbjct 1418026 GTATGTTTCGATTGCAGCATCAATGTCTTCTTTGTGAATCCCCACAGACACCCTCATCAA 1418085 Query 78518 CATATGCTGAGGTCTTTCAACC 78539 ||||||||| ||||||||| || Sbjct 1418086 CATATGCTGTGGTCTTTCAGCC 1418107 Score = 86.0 bits (94), Expect = 9e-12 Identities = 58/65 (89%), Gaps = 0/65 (0%) Strand=Plus/Plus Query 77925 TCAAATTCATCTCCCCAAACATCATCCAATCCAGGGCATTCATTTGGGCACATCAATGAC 77984 |||||||| ||||||||||| ||||||| ||||| ||||||||||| |||||||| ||| Sbjct 1408333 TCAAATTCCTCTCCCCAAACTTCATCCAGACCAGGACATTCATTTGGACACATCAAAGAC 1408392 Query 77985 CAGTC 77989 ||||| Sbjct 1408393 CAGTC 1408397 >seq190 Length=3085523 Score = 132 bits (146), Expect = 7e-26 Identities = 251/360 (70%), Gaps = 21/360 (6%) Strand=Plus/Plus Query 45876 TCCAGTGGATCCAAATCCT--TGAGCGTCTCTTTCAGTACCATCTAGAGA-TTGCACTTC 45932 ||||||||| || || ||| ||| | | ||||||||| |||| | ||| ||| ||||| Sbjct 695227 TCCAGTGGAACCCAAACCTCCTGAAC--CCCTTTCAGTATCATCCA-AGACTTGAACTTC 695283 Query 45933 CTTCAGATCAGGATAATATATACGTTGATAGATTAGTTGAGCTATTCTATCACCCGTATT 45992 | | || |||||| | | ||| | | || || ||||| |||| ||||||| | || Sbjct 695284 TTCAATTTCTGGATAAAAAACCTGTTCACAAATGAGCTGAGCAATTCCATCACCCTTTTT 695343 Query 45993 TATTTCAAATATATCTTTTCCATTATTGATCAGAATGACTCCAATTGTCCCTCTATAATC 46052 | ||||||| | ||||| || ||||| || || || |||| | || |||||||| Sbjct 695344 CACTTCAAATTTCTCTTTGTCAAAATTGAACAATATAACACCAACATTTCCCCTATAATC 695403 Query 46053 TTCATCTATTACTCCCCCTCCCACATCGAT---ACCTTTTAGAGACAGTCCAGATCTAGG 46109 ||||||||| || || |||| |||||||| |||| || || ||||| | || Sbjct 695404 TTCATCTATGACACCAGCTCCTACATCGATGAAGTGTTTTGCAGCCAAGCCAGAACGTGG 695463 Query 46110 AGCTATTCTTCCATA----ACAGAATTTGGGCATAGACATCCGAATATCTGTTTTAATCA 46165 ||||| ||||||||| ||||| | | || ||| |||| || || || | || Sbjct 695464 AGCTACTCTTCCATAGCACCCAGAA----GAAAGAGCTATCTGAATGTCCGTCTTCA-CA 695518 Query 46166 ATCTCCTTTCTCC--AGGAGGGATAGTATAGTCGTACGCACTGTATAAATCATATCCTGC 46223 | |||||||| ||| || || ||||| || || ||||||| | ||||| ||||| Sbjct 695519 A-GGGCTTTCTCCATAGGTGGTATTGTATAATCATAGGCACTGTCCAGGTCATAGCCTGC 695577 >seq83 Length=9551901 Score = 118 bits (130), Expect = 1e-21 Identities = 239/345 (69%), Gaps = 21/345 (6%) Strand=Plus/Minus Query 45876 TCCAGTGGATCCAAATCCT--TGAGCGTCTCTTTCAGTACCATCTAGAGA-TTGCACTTC 45932 |||||| || || || ||| ||| | | | ||||||| |||| | ||| ||| ||||| Sbjct 3112018 TCCAGTAGAACCCAAACCTCCTGAAC--CCCATTCAGTATCATCCA-AGACTTGAACTTC 3111962 Query 45933 CTTCAGATCAGGATAATATATACGTTGATAGATTAGTTGAGCTATTCTATCACCCGTATT 45992 | | || |||||| | || | | | || || ||||| ||||||| |||| | || Sbjct 3111961 TTCAATTTCTGGATAAAAAATCTGCCCACAAATGAGCTGAGCAATTCTATTACCCTTTTT 3111902 Query 45993 TATTTCAAATATATCTTTTCCATTATTGATCAGAATGACTCCAATTGTCCCTCTATAATC 46052 | |||||| | ||||| ||| ||||| || || || |||| | |||| |||||||| Sbjct 3111901 CACTTCAAACTTCTCTTTGCCAAAATTGAACAATATAACACCAACTTTCCCCCTATAATC 3111842 Query 46053 TTCATCTATTACTCCCCCTCCCACATCGAT---ACCTTTTAGAGACAGTCCAGATCTAGG 46109 ||||| ||| || || |||| |||||||| |||| || || ||||| | || Sbjct 3111841 TTCATATATGACACCAGCTCCTACATCGATGAAGTGTTTTGAAGCCAAGCCAGAACGTGG 3111782 Query 46110 AGCTATTCTTCCATA----ACAGAATTTGGGCATAGACATCCGAATATCTGTTTTAATCA 46165 ||||| ||||||||| ||||| || | || ||| |||| || || || | || Sbjct 3111781 AGCTACTCTTCCATAGCACCCAGAA----GGAAGAGCTATCTGAATGTCCGTCTTCA-CA 3111727 Query 46166 ATCTCCTTTCTCC--AGGAGGGATAGTATAGTCGTACGCACTGTA 46208 | |||||||| ||| || || ||| | || || |||||||| Sbjct 3111726 A-GGGCTTTCTCCATAGGTGGTATTGTACAATCATAGGCACTGTA 3111683 >seq113 Length=6198913 Score = 105 bits (116), Expect = 9e-18 Identities = 247/362 (68%), Gaps = 22/362 (6%) Strand=Plus/Plus Query 45878 CAGTGGATCCAAATCCT--TGAGCGTCTCTTTCAGTACCATCTAGAGA-TTGCACTTCCT 45934 |||| || ||||| ||| ||| | | ||||||||| |||| | ||| ||| ||||| | Sbjct 4701933 CAGTAGAACCAAAACCTCCTGAAC--CCCTTTCAGTATCATCCA-AGACTTGAACTTCTT 4701989 Query 45935 TCAGATCAGGATAATATATAC-GTTGATAGATTAGTTGAGCTATTCTATCACCCGTATTT 45993 | || |||||| | | | | | | || || ||||| |||| ||||||| | || Sbjct 4701990 CAATTTCTGGATAAAAAAATCTGCTCACGAATGAGCTGAGCAATTCGATCACCCTTTTTC 4702049 Query 45994 ATTTCAAATATATCTTTTCCATTATTGATCAGAATGACTCCAATTGTCCCTCTATAATCT 46053 | |||||| | ||||| ||| ||||| || || || |||| | || ||||||||| Sbjct 4702050 ACTTCAAACTTCTCTTTGCCAAAATTGAGCAATATAACACCAAAATTTCCCCTATAATCT 4702109 Query 46054 TCATCTATTACTCCCCCTCCCACATC---GATACCTTTTAGAGACAGTCCAGATCTAGGA 46110 |||||||| || || |||| ||||| || |||| || || ||| | | ||| Sbjct 4702110 TCATCTATGACACCAGCTCCTACATCAATGAAGTGTTTTGCAGCCAAGCCAAAACGTGGA 4702169 Query 46111 GCTATTCTTCCATA----ACAGAATTTGGGCATAGACATCCGAATATCTGTTTTAATCAA 46166 |||| ||||||||| ||||| | | || ||| |||| || |||| | ||| Sbjct 4702170 GCTACTCTTCCATAGCACCCAGAA----AGAAGAGCTATCTGAATGTCCATTTTCA-CAA 4702224 Query 46167 TCTCCTTTCTC--CAGGAGGGATAGTATAGTCGTACGCACTGTATAAATCATATCCTGCT 46224 ||||||| |||| || || |||| || || |||||||| | || || ||||| Sbjct 4702225 -GGGCTTTCTCCACAGGTGGTATTATATAATCATAGGCACTGTACAGGTCGTAGCCTGCA 4702283 Query 46225 GC 46226 || Sbjct 4702284 GC 4702285 >seq20 Length=25211774 Score = 98.7 bits (108), Expect = 1e-15 Identities = 93/119 (78%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 48165 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGGGCATTAGTCCACGTTTTTTG 48224 || ||||| ||||| | || || ||||| ||||| || ||||| ||||| || || || Sbjct 21308483 TCGTCTCTGCTAATAAGCTCATTGGAAAACGTGAGGCCAGGCATAAGTCCTCGCTTCTTC 21308542 Query 48225 AGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACGGCCGCAAATGC 48283 ||||| ||||| | ||||||||| ||||||||||| || || || || || ||||| || Sbjct 21308543 AGCCAGAATATCGACGCGAAAGAACCAGAAAAGAAGATTCCCTCCACCGCGGCAAAGGC 21308601 Score = 96.9 bits (106), Expect = 5e-15 Identities = 109/144 (76%), Gaps = 4/144 (3%) Strand=Plus/Plus Query 47790 GTTCTTTAA-AAGTCAACATCTAAAGAAAAATGATTATCTTCTTGA---GACATAACTCC 47845 |||| || | |||||| |||| || | ||| ||| ||| | || ||||| ||||| Sbjct 21306511 GTTCATTCAGAAGTCAGCATCCAAGGTGAAAGAATTCTCTGTTGGACTGGACATCACTCC 21306570 Query 47846 CATTTTTTGATATTCACCCACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATAT 47905 |||| | ||||| || || || | ||||| || || ||||| || ||||||| ||| || Sbjct 21306571 CATTCTCTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTCCCTTCCAGTGAAAT 21306630 Query 47906 ATTTTCCATAAAATCAAATGGATT 47929 ||| ||||| |||||||||||||| Sbjct 21306631 ATTCTCCATGAAATCAAATGGATT 21306654 >seq17 Length=26966924 Score = 96.9 bits (106), Expect = 5e-15 Identities = 94/121 (78%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 48163 CTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGGGCATTAGTCCACGTTTTT 48222 |||||||||| || || | ||| || ||||| ||||| || ||||| || || | || | Sbjct 9451004 CTTCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGTCCAGGCATGAGGCCTCTCTTCT 9450945 Query 48223 TGAGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACGGCCGCAAATG 48282 | ||||| ||||| || || ||||||||||| ||||| | |||||||| || ||||| | Sbjct 9450944 TTAGCCAGAATATAGCAGCAAAAGATCCAGAGAAGAAAACTCCTTCTACTGCAGCAAAGG 9450885 Query 48283 C 48283 | Sbjct 9450884 C 9450884 Score = 84.2 bits (92), Expect = 3e-11 Identities = 85/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 48523 CCAAATTCTCATTTACTATTCCATCACTAGCAGCAAAAAATGCTAATACATGTTTAATAA 48582 ||||||| |||||||| |||||||||||||| |||||||| ||||| | || || | Sbjct 9446976 CCAAATTTTCATTTACAATTCCATCACTAGCTGCAAAAAAGGCTAAGATGTGAGAGATGA 9446917 Query 48583 AATATTTTTCGTTGGAAGTCAGTTTATTCCAGTCATTGATATCTTTTGATA 48633 |||| || || | ||| | ||||| ||||||| | | ||| ||||||| Sbjct 9446916 AATACTTCTCATCGGATTTAAGTTTGTTCCAGTGAGGAAGATCCTTTGATA 9446866 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694102705711520