Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Dipodomys_20ordii_20[refseq_20GCF_5F000151885.1_202014-12-12]
65,193 sequences; 2,236,368,823 total letters
Query= NC_031038.1
Length=222832
Score E
Sequences producing significant alignments: (Bits) Value
seq22 132 7e-26
seq190 111 2e-19
seq20 111 2e-19
seq17 111 2e-19
seq83 102 1e-16
seq113 98.7 1e-15
>seq22
Length=17426531
Score = 132 bits (146), Expect = 7e-26
Identities = 132/171 (77%), Gaps = 0/171 (0%)
Strand=Plus/Plus
Query 75444 TCCATCCGTAGAAATGCATGCTTGTTAGTTTGGAATAACTCGGATCGGCTATATGAATAT 75503
|||| |||||||| ||||| || || |||||| ||| | || || || ||||| || |
Sbjct 1394320 TCCAGCCGTAGAAGTGCATACTAGTGAGTTTGCCATAGTTAGGCTCTGCAATATGGATGT 1394379
Query 75504 TCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTATAATGGTCT 75563
||| |||||||||||||| |||||||| ||||| || |||||||| || | || || |
Sbjct 1394380 TCAAAGACTGACTTTGATCAATGAAAGCACCTCTCTCGGCCGCCATCTTAAGAACAGTTT 1394439
Query 75564 TTTGAGGAATTTCCCAAATAGTTTTGAAAACTTGTTTGATATCATCTGGAA 75614
| |||| |||||||| | ||| || ||| |||||| | |||||| ||||
Sbjct 1394440 TCTGAGAGATTTCCCACACAGTCTTATAAAGTTGTTTCAAATCATCAGGAA 1394490
Score = 114 bits (126), Expect = 2e-20
Identities = 105/133 (79%), Gaps = 0/133 (0%)
Strand=Plus/Plus
Query 75722 TGAAATTCTCCAGACAATACTCTTCGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 75781
||||||||||| ||||| ||||| ||||| || || ||||||||||| ||||| | ||
Sbjct 1398048 TGAAATTCTCCTGACAAGACTCTGCGAGTATAGATGTTACTGGTATAAGGTTCAATGGAC 1398107
Query 75782 TCATTGTTTCCCAAAATTTGAGCAGTTGAAGCAGTCGGCATAGGTGCCACCAATAAACTA 75841
||||| ||||||| || ||||||||||||||||| ||||| || || | | | ||
Sbjct 1398108 TCATTATTTCCCAGGATCTGAGCAGTTGAAGCAGTAGGCATCGGGGCAAGAAGCAGGCTG 1398167
Query 75842 TTTCTGAGACCAT 75854
||||| | |||||
Sbjct 1398168 TTTCTTATACCAT 1398180
Score = 107 bits (118), Expect = 3e-18
Identities = 127/172 (74%), Gaps = 0/172 (0%)
Strand=Plus/Plus
Query 77339 CTAAATAGtttttttGTTTCCTTGTGTAGATTCGATACGGCTATTCTAGCAGCTAGAATT 77398
||||| | ||| |||||||| ||||||| || || || || || || || || | ||
Sbjct 1425067 CTAAACACTTTCTTTGTTTCTTTGTGTAAGTTGGAGACTGCAATCCTTGCTGCCAAGATG 1425126
Query 77399 GCATAGTCAGGATGTTGTGTAGTGCAGGTGGCTGCTATTTCTGCCGCTAAAGTATCTAAT 77458
|||||||||||||| | ||||| ||||||| ||| | || || ||||| ||||| | |
Sbjct 1425127 GCATAGTCAGGATGCTTAGTAGTCAAGGTGGCAGCTGTCTCAGCAGCTAATGTATCCAGT 1425186
Query 77459 TCTATAGTAGTAACTCCGTTATATAGCCCTTGAATAACTTTCATGGCTATTT 77510
|| | ||||| || || | || || ||||| || || ||||||| ||||
Sbjct 1425187 TCCACCGTAGTGACCCCACTGTAGAGGCCTTGGATTACCTTCATGGTGATTT 1425238
Score = 100 bits (110), Expect = 4e-16
Identities = 105/138 (76%), Gaps = 0/138 (0%)
Strand=Plus/Plus
Query 76993 AGTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATT 77052
||| || ||||| || | ||||| || |||||||||||||| || || ||||| || ||
Sbjct 1417966 AGTGCCAGCATTGAAGAGAGTAGGTGAGGCATGAGTGAACCACTTCTCTGAAAGAAGGTT 1418025
Query 77053 GTATGTTTCAATAACTGCTTCTATATCCCATTGATGAATTCCTACAGCGACACGCATCAA 77112
||||||||| || | || || || || || ||||| || |||| || | ||||||
Sbjct 1418026 GTATGTTTCGATTGCAGCATCAATGTCTTCTTTGTGAATCCCCACAGACACCCTCATCAA 1418085
Query 77113 CATATGCTGAGGTCGTTC 77130
||||||||| |||| |||
Sbjct 1418086 CATATGCTGTGGTCTTTC 1418103
Score = 98.7 bits (108), Expect = 1e-15
Identities = 142/198 (72%), Gaps = 2/198 (1%)
Strand=Plus/Plus
Query 75950 GATCCATTATATGTTTCGTAAGTCCCGTCCTTTTCAGCTAGTTCGCAACTCGCCTCTAAC 76009
|| || | ||| ||||| || | || | || | ||||| || ||||| || || |
Sbjct 1401754 GAGCCTTCATAGGTTTCATACGGGCCATACTCCTTGGCTAGGTCACAACTGGCTTCCAGG 1401813
Query 76010 GCACCGTAATAAATTGTTTCGAAAATCTTCTTATT-AAGATCTTGCGCTTCAAGACTATC 76068
|| || |||||||| ||||| || || | |||||| || | || | ||||| |||| ||
Sbjct 1401814 GCCCCATAATAAATAGTTTCAAAGATTTGCTTATTTAATAACT-GAGCTTCTGGACTCTC 1401872
Query 76069 AAAAGGATAATGTAAAAGAATAAATGCATCTGCTAGTCCCTGAACTCCAATACCAATAGG 76128
|||||| || | || ||||| ||||||||||| || ||||| ||||| ||||| ||
Sbjct 1401873 AAAAGGGTATCTCATCAGGATAAAGGCATCTGCTAGACCTTGAACCCCAATTCCAATGGG 1401932
Query 76129 TCTATGTCTCTTATTGGA 76146
| ||| | ||||| ||
Sbjct 1401933 GCGATGGCGTTTATTTGA 1401950
Score = 95.1 bits (104), Expect = 2e-14
Identities = 66/75 (88%), Gaps = 0/75 (0%)
Strand=Plus/Plus
Query 76510 ATATAACCGTTCAAATTCATCTCCCCAAACATCATCCAAACCAGGACATTCATTCGGACA 76569
||||||| |||||||| ||||||||||| ||||||| ||||||||||||||| |||||
Sbjct 1408323 ATATAACTTCTCAAATTCCTCTCCCCAAACTTCATCCAGACCAGGACATTCATTTGGACA 1408382
Query 76570 CATCAATGACCACTC 76584
|||||| ||||| ||
Sbjct 1408383 CATCAAAGACCAGTC 1408397
>seq190
Length=3085523
Score = 111 bits (122), Expect = 2e-19
Identities = 214/311 (69%), Gaps = 15/311 (5%)
Strand=Plus/Plus
Query 44411 TTGTACTTCCTCTAGATCAGGATAATATATACGTTGATAGATTAGTTGAGCTATTCTATC 44470
||| ||||| || | || |||||| | | ||| | | || || ||||| |||| |||
Sbjct 695275 TTGAACTTCTTCAATTTCTGGATAAAAAACCTGTTCACAAATGAGCTGAGCAATTCCATC 695334
Query 44471 ACCTGTATTTATTTTAAAGGTATCTTTTCCATTATTGATCAAAATTACTCCAATGTTCCC 44530
||| | || | || ||| | ||||| || ||||| ||| || || |||| || ||
Sbjct 695335 ACCCTTTTTCACTTCAAATTTCTCTTTGTCAAAATTGAACAATATAACACCAACATTTCC 695394
Query 44531 CCTATAATCTTCATCTATTACTCCACCTCCCACATCAAT---ACCTTTTAGAGAAAGACC 44587
|||||||||||||||||| || ||| |||| ||||| || |||| || | ||
Sbjct 695395 CCTATAATCTTCATCTATGACACCAGCTCCTACATCGATGAAGTGTTTTGCAGCCAAGCC 695454
Query 44588 CGATCTAGGCGCTATTCTTCCATA----ACAGAATTTTGGCATAGACATACGAATATCTG 44643
|| | || |||| ||||||||| ||||| | | || || |||| || |
Sbjct 695455 AGAACGTGGAGCTACTCTTCCATAGCACCCAGAA----GAAAGAGCTATCTGAATGTCCG 695510
Query 44644 TTTTAATCAACCGTCTTTCTCC--AGGAGGGATAGTATAATCGTAAGCACTGTATAAATC 44701
| || | ||| | |||||||| ||| || || |||||||| || ||||||| | ||
Sbjct 695511 TCTTCA-CAA-GGGCTTTCTCCATAGGTGGTATTGTATAATCATAGGCACTGTCCAGGTC 695568
Query 44702 ATATCCTGCCG 44712
||| |||||||
Sbjct 695569 ATAGCCTGCCG 695579
>seq20
Length=25211774
Score = 111 bits (122), Expect = 2e-19
Identities = 105/134 (78%), Gaps = 0/134 (0%)
Strand=Plus/Plus
Query 46654 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGCATTAGTCCACGCTTTTTG 46713
|| ||||| ||||| | || || ||||| ||||| |||||||| ||||| ||||| ||
Sbjct 21308483 TCGTCTCTGCTAATAAGCTCATTGGAAAACGTGAGGCCAGGCATAAGTCCTCGCTTCTTC 21308542
Query 46714 AGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACAGCCGCGAATGCG 46773
||||| ||||| | ||||||||| ||||||||||| || || || || || || || ||
Sbjct 21308543 AGCCAGAATATCGACGCGAAAGAACCAGAAAAGAAGATTCCCTCCACCGCGGCAAAGGCT 21308602
Query 46774 ACAAGTCTCTCTCC 46787
|||| || |||||
Sbjct 21308603 ACAACTCGTTCTCC 21308616
>seq17
Length=26966924
Score = 111 bits (122), Expect = 2e-19
Identities = 106/136 (78%), Gaps = 0/136 (0%)
Strand=Plus/Minus
Query 46652 CTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGCATTAGTCCACGCTTTT 46711
|||||||||| || || | ||| || ||||| ||||| |||||||| || || | ||| |
Sbjct 9451004 CTTCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGTCCAGGCATGAGGCCTCTCTTCT 9450945
Query 46712 TGAGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACAGCCGCGAATG 46771
| ||||| |||||||| || ||||||||||| ||||| | |||||||| || || || |
Sbjct 9450944 TTAGCCAGAATATAGCAGCAAAAGATCCAGAGAAGAAAACTCCTTCTACTGCAGCAAAGG 9450885
Query 46772 CGACAAGTCTCTCTCC 46787
| || | ||| || ||
Sbjct 9450884 CCACCACTCTTTCCCC 9450869
Score = 89.7 bits (98), Expect = 7e-13
Identities = 70/84 (83%), Gaps = 0/84 (0%)
Strand=Plus/Minus
Query 47127 TACTTCTTCAGCTGTCCAGAATGACGCCTCTGCTTTTTTATACATATTCCATATATCACG 47186
||| ||||| ||||||||||| || |||| |||| ||||||||| ||||| |||||| |
Sbjct 9440299 TACCTCTTCTGCTGTCCAGAAGGATGCCTGAGCTTGTTTATACATTTTCCAAATATCAGG 9440240
Query 47187 ATATTGGATCGGAAAAATAACAAA 47210
|| ||||| |||||||| |||||
Sbjct 9440239 GTACTGGATTGGAAAAATGACAAA 9440216
>seq83
Length=9551901
Score = 102 bits (112), Expect = 1e-16
Identities = 202/294 (69%), Gaps = 15/294 (5%)
Strand=Plus/Minus
Query 44411 TTGTACTTCCTCTAGATCAGGATAATATATACGTTGATAGATTAGTTGAGCTATTCTATC 44470
||| ||||| || | || |||||| | || | | | || || ||||| |||||||
Sbjct 3111970 TTGAACTTCTTCAATTTCTGGATAAAAAATCTGCCCACAAATGAGCTGAGCAATTCTATT 3111911
Query 44471 ACCTGTATTTATTTTAAAGGTATCTTTTCCATTATTGATCAAAATTACTCCAATGTTCCC 44530
||| | || | || ||| | ||||| ||| ||||| ||| || || |||| |||||
Sbjct 3111910 ACCCTTTTTCACTTCAAACTTCTCTTTGCCAAAATTGAACAATATAACACCAACTTTCCC 3111851
Query 44531 CCTATAATCTTCATCTATTACTCCACCTCCCACATCAAT---ACCTTTTAGAGAAAGACC 44587
|||||||||||||| ||| || ||| |||| ||||| || |||| || | ||
Sbjct 3111850 CCTATAATCTTCATATATGACACCAGCTCCTACATCGATGAAGTGTTTTGAAGCCAAGCC 3111791
Query 44588 CGATCTAGGCGCTATTCTTCCATA----ACAGAATTTTGGCATAGACATACGAATATCTG 44643
|| | || |||| ||||||||| ||||| || | || || |||| || |
Sbjct 3111790 AGAACGTGGAGCTACTCTTCCATAGCACCCAGAA----GGAAGAGCTATCTGAATGTCCG 3111735
Query 44644 TTTTAATCAACCGTCTTTCTCC--AGGAGGGATAGTATAATCGTAAGCACTGTA 44695
| || | ||| | |||||||| ||| || || ||| |||| || ||||||||
Sbjct 3111734 TCTTCA-CAA-GGGCTTTCTCCATAGGTGGTATTGTACAATCATAGGCACTGTA 3111683
>seq113
Length=6198913
Score = 98.7 bits (108), Expect = 1e-15
Identities = 188/272 (69%), Gaps = 15/272 (6%)
Strand=Plus/Plus
Query 44451 ATTAGTTGAGCTATTCTATCACCTGTATTTATTTTAAAGGTATCTTTTCCATTATTGATC 44510
|| || ||||| |||| |||||| | || | || ||| | ||||| ||| ||||| |
Sbjct 4702020 ATGAGCTGAGCAATTCGATCACCCTTTTTCACTTCAAACTTCTCTTTGCCAAAATTGAGC 4702079
Query 44511 AAAATTACTCCAATGTTCCCCCTATAATCTTCATCTATTACTCCACCTCCCACATCAAT- 44569
|| || || |||| || |||||||||||||||||||| || ||| |||| ||||||||
Sbjct 4702080 AATATAACACCAAAATTTCCCCTATAATCTTCATCTATGACACCAGCTCCTACATCAATG 4702139
Query 44570 --ACCTTTTAGAGAAAGACCCGATCTAGGCGCTATTCTTCCATA----ACAGAATTTTGG 44623
|||| || | || | | || |||| ||||||||| ||||| |
Sbjct 4702140 AAGTGTTTTGCAGCCAAGCCAAAACGTGGAGCTACTCTTCCATAGCACCCAGAA----AG 4702195
Query 44624 CATAGACATACGAATATCTGTTTTAATCAACCGTCTTTCTC--CAGGAGGGATAGTATAA 44681
| || || |||| || |||| | ||| | ||||||| |||| || || |||||
Sbjct 4702196 AAGAGCTATCTGAATGTCCATTTTCA-CAA-GGGCTTTCTCCACAGGTGGTATTATATAA 4702253
Query 44682 TCGTAAGCACTGTATAAATCATATCCTGCCGC 44713
|| || |||||||| | || || ||||| ||
Sbjct 4702254 TCATAGGCACTGTACAGGTCGTAGCCTGCAGC 4702285
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 712353420845760
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