Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dipodomys_20ordii_20[refseq_20GCF_5F000151885.1_202014-12-12] 65,193 sequences; 2,236,368,823 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq22 132 7e-26 seq190 111 2e-19 seq20 111 2e-19 seq17 111 2e-19 seq83 102 1e-16 seq113 98.7 1e-15 >seq22 Length=17426531 Score = 132 bits (146), Expect = 7e-26 Identities = 132/171 (77%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 75444 TCCATCCGTAGAAATGCATGCTTGTTAGTTTGGAATAACTCGGATCGGCTATATGAATAT 75503 |||| |||||||| ||||| || || |||||| ||| | || || || ||||| || | Sbjct 1394320 TCCAGCCGTAGAAGTGCATACTAGTGAGTTTGCCATAGTTAGGCTCTGCAATATGGATGT 1394379 Query 75504 TCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTATAATGGTCT 75563 ||| |||||||||||||| |||||||| ||||| || |||||||| || | || || | Sbjct 1394380 TCAAAGACTGACTTTGATCAATGAAAGCACCTCTCTCGGCCGCCATCTTAAGAACAGTTT 1394439 Query 75564 TTTGAGGAATTTCCCAAATAGTTTTGAAAACTTGTTTGATATCATCTGGAA 75614 | |||| |||||||| | ||| || ||| |||||| | |||||| |||| Sbjct 1394440 TCTGAGAGATTTCCCACACAGTCTTATAAAGTTGTTTCAAATCATCAGGAA 1394490 Score = 114 bits (126), Expect = 2e-20 Identities = 105/133 (79%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 75722 TGAAATTCTCCAGACAATACTCTTCGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 75781 ||||||||||| ||||| ||||| ||||| || || ||||||||||| ||||| | || Sbjct 1398048 TGAAATTCTCCTGACAAGACTCTGCGAGTATAGATGTTACTGGTATAAGGTTCAATGGAC 1398107 Query 75782 TCATTGTTTCCCAAAATTTGAGCAGTTGAAGCAGTCGGCATAGGTGCCACCAATAAACTA 75841 ||||| ||||||| || ||||||||||||||||| ||||| || || | | | || Sbjct 1398108 TCATTATTTCCCAGGATCTGAGCAGTTGAAGCAGTAGGCATCGGGGCAAGAAGCAGGCTG 1398167 Query 75842 TTTCTGAGACCAT 75854 ||||| | ||||| Sbjct 1398168 TTTCTTATACCAT 1398180 Score = 107 bits (118), Expect = 3e-18 Identities = 127/172 (74%), Gaps = 0/172 (0%) Strand=Plus/Plus Query 77339 CTAAATAGtttttttGTTTCCTTGTGTAGATTCGATACGGCTATTCTAGCAGCTAGAATT 77398 ||||| | ||| |||||||| ||||||| || || || || || || || || | || Sbjct 1425067 CTAAACACTTTCTTTGTTTCTTTGTGTAAGTTGGAGACTGCAATCCTTGCTGCCAAGATG 1425126 Query 77399 GCATAGTCAGGATGTTGTGTAGTGCAGGTGGCTGCTATTTCTGCCGCTAAAGTATCTAAT 77458 |||||||||||||| | ||||| ||||||| ||| | || || ||||| ||||| | | Sbjct 1425127 GCATAGTCAGGATGCTTAGTAGTCAAGGTGGCAGCTGTCTCAGCAGCTAATGTATCCAGT 1425186 Query 77459 TCTATAGTAGTAACTCCGTTATATAGCCCTTGAATAACTTTCATGGCTATTT 77510 || | ||||| || || | || || ||||| || || ||||||| |||| Sbjct 1425187 TCCACCGTAGTGACCCCACTGTAGAGGCCTTGGATTACCTTCATGGTGATTT 1425238 Score = 100 bits (110), Expect = 4e-16 Identities = 105/138 (76%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 76993 AGTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATT 77052 ||| || ||||| || | ||||| || |||||||||||||| || || ||||| || || Sbjct 1417966 AGTGCCAGCATTGAAGAGAGTAGGTGAGGCATGAGTGAACCACTTCTCTGAAAGAAGGTT 1418025 Query 77053 GTATGTTTCAATAACTGCTTCTATATCCCATTGATGAATTCCTACAGCGACACGCATCAA 77112 ||||||||| || | || || || || || ||||| || |||| || | |||||| Sbjct 1418026 GTATGTTTCGATTGCAGCATCAATGTCTTCTTTGTGAATCCCCACAGACACCCTCATCAA 1418085 Query 77113 CATATGCTGAGGTCGTTC 77130 ||||||||| |||| ||| Sbjct 1418086 CATATGCTGTGGTCTTTC 1418103 Score = 98.7 bits (108), Expect = 1e-15 Identities = 142/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 75950 GATCCATTATATGTTTCGTAAGTCCCGTCCTTTTCAGCTAGTTCGCAACTCGCCTCTAAC 76009 || || | ||| ||||| || | || | || | ||||| || ||||| || || | Sbjct 1401754 GAGCCTTCATAGGTTTCATACGGGCCATACTCCTTGGCTAGGTCACAACTGGCTTCCAGG 1401813 Query 76010 GCACCGTAATAAATTGTTTCGAAAATCTTCTTATT-AAGATCTTGCGCTTCAAGACTATC 76068 || || |||||||| ||||| || || | |||||| || | || | ||||| |||| || Sbjct 1401814 GCCCCATAATAAATAGTTTCAAAGATTTGCTTATTTAATAACT-GAGCTTCTGGACTCTC 1401872 Query 76069 AAAAGGATAATGTAAAAGAATAAATGCATCTGCTAGTCCCTGAACTCCAATACCAATAGG 76128 |||||| || | || ||||| ||||||||||| || ||||| ||||| ||||| || Sbjct 1401873 AAAAGGGTATCTCATCAGGATAAAGGCATCTGCTAGACCTTGAACCCCAATTCCAATGGG 1401932 Query 76129 TCTATGTCTCTTATTGGA 76146 | ||| | ||||| || Sbjct 1401933 GCGATGGCGTTTATTTGA 1401950 Score = 95.1 bits (104), Expect = 2e-14 Identities = 66/75 (88%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 76510 ATATAACCGTTCAAATTCATCTCCCCAAACATCATCCAAACCAGGACATTCATTCGGACA 76569 ||||||| |||||||| ||||||||||| ||||||| ||||||||||||||| ||||| Sbjct 1408323 ATATAACTTCTCAAATTCCTCTCCCCAAACTTCATCCAGACCAGGACATTCATTTGGACA 1408382 Query 76570 CATCAATGACCACTC 76584 |||||| ||||| || Sbjct 1408383 CATCAAAGACCAGTC 1408397 >seq190 Length=3085523 Score = 111 bits (122), Expect = 2e-19 Identities = 214/311 (69%), Gaps = 15/311 (5%) Strand=Plus/Plus Query 44411 TTGTACTTCCTCTAGATCAGGATAATATATACGTTGATAGATTAGTTGAGCTATTCTATC 44470 ||| ||||| || | || |||||| | | ||| | | || || ||||| |||| ||| Sbjct 695275 TTGAACTTCTTCAATTTCTGGATAAAAAACCTGTTCACAAATGAGCTGAGCAATTCCATC 695334 Query 44471 ACCTGTATTTATTTTAAAGGTATCTTTTCCATTATTGATCAAAATTACTCCAATGTTCCC 44530 ||| | || | || ||| | ||||| || ||||| ||| || || |||| || || Sbjct 695335 ACCCTTTTTCACTTCAAATTTCTCTTTGTCAAAATTGAACAATATAACACCAACATTTCC 695394 Query 44531 CCTATAATCTTCATCTATTACTCCACCTCCCACATCAAT---ACCTTTTAGAGAAAGACC 44587 |||||||||||||||||| || ||| |||| ||||| || |||| || | || Sbjct 695395 CCTATAATCTTCATCTATGACACCAGCTCCTACATCGATGAAGTGTTTTGCAGCCAAGCC 695454 Query 44588 CGATCTAGGCGCTATTCTTCCATA----ACAGAATTTTGGCATAGACATACGAATATCTG 44643 || | || |||| ||||||||| ||||| | | || || |||| || | Sbjct 695455 AGAACGTGGAGCTACTCTTCCATAGCACCCAGAA----GAAAGAGCTATCTGAATGTCCG 695510 Query 44644 TTTTAATCAACCGTCTTTCTCC--AGGAGGGATAGTATAATCGTAAGCACTGTATAAATC 44701 | || | ||| | |||||||| ||| || || |||||||| || ||||||| | || Sbjct 695511 TCTTCA-CAA-GGGCTTTCTCCATAGGTGGTATTGTATAATCATAGGCACTGTCCAGGTC 695568 Query 44702 ATATCCTGCCG 44712 ||| ||||||| Sbjct 695569 ATAGCCTGCCG 695579 >seq20 Length=25211774 Score = 111 bits (122), Expect = 2e-19 Identities = 105/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 46654 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGCATTAGTCCACGCTTTTTG 46713 || ||||| ||||| | || || ||||| ||||| |||||||| ||||| ||||| || Sbjct 21308483 TCGTCTCTGCTAATAAGCTCATTGGAAAACGTGAGGCCAGGCATAAGTCCTCGCTTCTTC 21308542 Query 46714 AGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACAGCCGCGAATGCG 46773 ||||| ||||| | ||||||||| ||||||||||| || || || || || || || || Sbjct 21308543 AGCCAGAATATCGACGCGAAAGAACCAGAAAAGAAGATTCCCTCCACCGCGGCAAAGGCT 21308602 Query 46774 ACAAGTCTCTCTCC 46787 |||| || ||||| Sbjct 21308603 ACAACTCGTTCTCC 21308616 >seq17 Length=26966924 Score = 111 bits (122), Expect = 2e-19 Identities = 106/136 (78%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 46652 CTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGCATTAGTCCACGCTTTT 46711 |||||||||| || || | ||| || ||||| ||||| |||||||| || || | ||| | Sbjct 9451004 CTTCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGTCCAGGCATGAGGCCTCTCTTCT 9450945 Query 46712 TGAGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACAGCCGCGAATG 46771 | ||||| |||||||| || ||||||||||| ||||| | |||||||| || || || | Sbjct 9450944 TTAGCCAGAATATAGCAGCAAAAGATCCAGAGAAGAAAACTCCTTCTACTGCAGCAAAGG 9450885 Query 46772 CGACAAGTCTCTCTCC 46787 | || | ||| || || Sbjct 9450884 CCACCACTCTTTCCCC 9450869 Score = 89.7 bits (98), Expect = 7e-13 Identities = 70/84 (83%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 47127 TACTTCTTCAGCTGTCCAGAATGACGCCTCTGCTTTTTTATACATATTCCATATATCACG 47186 ||| ||||| ||||||||||| || |||| |||| ||||||||| ||||| |||||| | Sbjct 9440299 TACCTCTTCTGCTGTCCAGAAGGATGCCTGAGCTTGTTTATACATTTTCCAAATATCAGG 9440240 Query 47187 ATATTGGATCGGAAAAATAACAAA 47210 || ||||| |||||||| ||||| Sbjct 9440239 GTACTGGATTGGAAAAATGACAAA 9440216 >seq83 Length=9551901 Score = 102 bits (112), Expect = 1e-16 Identities = 202/294 (69%), Gaps = 15/294 (5%) Strand=Plus/Minus Query 44411 TTGTACTTCCTCTAGATCAGGATAATATATACGTTGATAGATTAGTTGAGCTATTCTATC 44470 ||| ||||| || | || |||||| | || | | | || || ||||| ||||||| Sbjct 3111970 TTGAACTTCTTCAATTTCTGGATAAAAAATCTGCCCACAAATGAGCTGAGCAATTCTATT 3111911 Query 44471 ACCTGTATTTATTTTAAAGGTATCTTTTCCATTATTGATCAAAATTACTCCAATGTTCCC 44530 ||| | || | || ||| | ||||| ||| ||||| ||| || || |||| ||||| Sbjct 3111910 ACCCTTTTTCACTTCAAACTTCTCTTTGCCAAAATTGAACAATATAACACCAACTTTCCC 3111851 Query 44531 CCTATAATCTTCATCTATTACTCCACCTCCCACATCAAT---ACCTTTTAGAGAAAGACC 44587 |||||||||||||| ||| || ||| |||| ||||| || |||| || | || Sbjct 3111850 CCTATAATCTTCATATATGACACCAGCTCCTACATCGATGAAGTGTTTTGAAGCCAAGCC 3111791 Query 44588 CGATCTAGGCGCTATTCTTCCATA----ACAGAATTTTGGCATAGACATACGAATATCTG 44643 || | || |||| ||||||||| ||||| || | || || |||| || | Sbjct 3111790 AGAACGTGGAGCTACTCTTCCATAGCACCCAGAA----GGAAGAGCTATCTGAATGTCCG 3111735 Query 44644 TTTTAATCAACCGTCTTTCTCC--AGGAGGGATAGTATAATCGTAAGCACTGTA 44695 | || | ||| | |||||||| ||| || || ||| |||| || |||||||| Sbjct 3111734 TCTTCA-CAA-GGGCTTTCTCCATAGGTGGTATTGTACAATCATAGGCACTGTA 3111683 >seq113 Length=6198913 Score = 98.7 bits (108), Expect = 1e-15 Identities = 188/272 (69%), Gaps = 15/272 (6%) Strand=Plus/Plus Query 44451 ATTAGTTGAGCTATTCTATCACCTGTATTTATTTTAAAGGTATCTTTTCCATTATTGATC 44510 || || ||||| |||| |||||| | || | || ||| | ||||| ||| ||||| | Sbjct 4702020 ATGAGCTGAGCAATTCGATCACCCTTTTTCACTTCAAACTTCTCTTTGCCAAAATTGAGC 4702079 Query 44511 AAAATTACTCCAATGTTCCCCCTATAATCTTCATCTATTACTCCACCTCCCACATCAAT- 44569 || || || |||| || |||||||||||||||||||| || ||| |||| |||||||| Sbjct 4702080 AATATAACACCAAAATTTCCCCTATAATCTTCATCTATGACACCAGCTCCTACATCAATG 4702139 Query 44570 --ACCTTTTAGAGAAAGACCCGATCTAGGCGCTATTCTTCCATA----ACAGAATTTTGG 44623 |||| || | || | | || |||| ||||||||| ||||| | Sbjct 4702140 AAGTGTTTTGCAGCCAAGCCAAAACGTGGAGCTACTCTTCCATAGCACCCAGAA----AG 4702195 Query 44624 CATAGACATACGAATATCTGTTTTAATCAACCGTCTTTCTC--CAGGAGGGATAGTATAA 44681 | || || |||| || |||| | ||| | ||||||| |||| || || ||||| Sbjct 4702196 AAGAGCTATCTGAATGTCCATTTTCA-CAA-GGGCTTTCTCCACAGGTGGTATTATATAA 4702253 Query 44682 TCGTAAGCACTGTATAAATCATATCCTGCCGC 44713 || || |||||||| | || || ||||| || Sbjct 4702254 TCATAGGCACTGTACAGGTCGTAGCCTGCAGC 4702285 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712353420845760