Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dipodomys_20ordii_20[refseq_20GCF_5F000151885.1_202014-12-12] 65,193 sequences; 2,236,368,823 total letters Query= NC_031224.1 Length=59443 Score E Sequences producing significant alignments: (Bits) Value seq25 100 1e-16 >seq25 Length=23434732 Score = 100 bits (110), Expect = 1e-16 Identities = 112/147 (76%), Gaps = 2/147 (1%) Strand=Plus/Plus Query 52110 ATGGCGTTGGCTCCCTGCCATACACTATTCCAATTCTATGTAGCTGAA-GGTAAGCTTTC 52168 |||||| || ||||||||||| | || | ||| |||||||| | |||| || |||| || Sbjct 21720555 ATGGCGCTGCCTCCCTGCCATGCCCTCTGCCAGTTCTATGT-GGTGAATGGGGAGCTGTC 21720613 Query 52169 GTGCCATTTGTATCAGCGGTCTGCCGACATGTTCTTGGGCGTTCCGTTTAACATTGCCAG 52228 ||||| |||| ||| |||||| |||||| | |||| || || || ||||||||||| Sbjct 21720614 CTGCCAGCTGTACCAGAGGTCTGGAGACATGGGCCTGGGTGTGCCCTTCAACATTGCCAG 21720673 Query 52229 CTATTCCTTGCTGACGCATCTGATTGC 52255 ||| || |||| || | ||||||| Sbjct 21720674 CTACGCCCTGCTCACCTACATGATTGC 21720700 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 189948833973730