Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Dipodomys_20ordii_20[refseq_20GCF_5F000151885.1_202014-12-12]
65,193 sequences; 2,236,368,823 total letters
Query= NC_031465.1
Length=360610
Score E
Sequences producing significant alignments: (Bits) Value
seq147 123 6e-23
seq66 116 9e-21
seq36 105 2e-17
seq91 96.9 8e-15
>seq147
Length=2532799
Score = 123 bits (136), Expect = 6e-23
Identities = 163/225 (72%), Gaps = 6/225 (3%)
Strand=Plus/Minus
Query 151883 CCTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGT 151942
|||||| | ||| || || || || || |||||||| ||||||||||| || | | |||
Sbjct 2384170 CCTGAGACGGAGAACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGAAAGAGT 2384111
Query 151943 TCTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCC 152002
| |||||||| || || || |||||||| |||||||||||||| | | ||| ||
Sbjct 2384110 GCGGCCATCTTCCAGCTGCTTGCCTGCGAAGATCAGCCTCTGCTGGTCGGGAGGGATGCC 2384051
Query 152003 TTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTC 152059
|| || || || || || || ||| |||| | | | || ||| ||| || ||
Sbjct 2384050 CTCTTTATCCTGGATCTTGGCCTTCACATTCTCAATGGTATC---ACTGGGCTCCACCTC 2383994
Query 152060 AAGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104
|| ||||| || ||||| || || ||||||||||||| ||||||
Sbjct 2383993 CAGGGTAATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 2383949
Score = 111 bits (122), Expect = 4e-19
Identities = 155/216 (72%), Gaps = 6/216 (3%)
Strand=Plus/Minus
Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952
||||| || || || || ||||| || ||||||||||| || | | ||| | ||||||
Sbjct 2383932 AGGACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATCT 2383873
Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012
|| || || || |||||||| |||||||||||||| | | ||| || || || ||
Sbjct 2383872 TCCAGCTGCTTGCCTGCGAAGATCAGCCTCTGCTGGTCAGGAGGGATGCCCTCTTTATCC 2383813
Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAATA 152069
|| || || || ||| |||| | | | || ||| ||| || || ||||| ||
Sbjct 2383812 TGGATCTTGGCCTTCACATTCTCAATGGTATC---ACTGGGCTCAACCTCTAGAGTGATG 2383756
Query 152070 GTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATT 152105
|| ||||| || | ||||||||||||| |||||||
Sbjct 2383755 GTCTTGCCAGTCAAGGTCTTCACGAAGATCTGCATT 2383720
>seq66
Length=5789316
Score = 116 bits (128), Expect = 9e-21
Identities = 156/216 (72%), Gaps = 6/216 (3%)
Strand=Plus/Minus
Query 151892 GAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATC 151951
||| || || || ||||| ||||| || ||||||||||| || | | || | |||||
Sbjct 2649880 GAGCACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTACGGCCATC 2649821
Query 151952 TTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTC 152011
||| || || || || ||||| |||||||||||||| | | || |||||||| ||
Sbjct 2649820 TTCCAGCTGCTTGCCCGCAAAGATCAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTGTC 2649761
Query 152012 TTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAAT 152068
|| || || |||||| |||| | | |||| ||| ||| || || || || ||
Sbjct 2649760 CTGGATCTTAGCCTTGACATTCTCGATGGTGTC---ACTGGGCTCCACCTCCAGGGTGAT 2649704
Query 152069 AGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104
|| ||||| || || ||||||||||||| ||||||
Sbjct 2649703 GGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 2649668
Score = 98.7 bits (108), Expect = 2e-15
Identities = 157/222 (71%), Gaps = 4/222 (2%)
Strand=Plus/Minus
Query 151886 GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCT 151945
||| | ||| || || || ||||| ||||| || ||||||||||| || | | || |
Sbjct 2649658 GAGACGGAGCACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTACG 2649599
Query 151946 CCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTC 152005
|||||||| || || || || ||||| | ||||||||| || | | || || ||
Sbjct 2649598 GCCATCTTCCAGCTGCTTGCCTGCAAAGATCAACCTCTGCTGATCAGGTGGTATGCCCTC 2649539
Query 152006 CTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGT--CTGAACTCTCTACTTCAAGA 152063
||| || || || || |||||| |||| | | ||| ||| ||| | || ||||
Sbjct 2649538 CTTGTCCTGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTC-CACCTCCAAG- 2649481
Query 152064 GTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATT 152105
|| || || ||||| || || |||||||| |||| |||||||
Sbjct 2649480 GTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATT 2649439
>seq36
Length=17049061
Score = 105 bits (116), Expect = 2e-17
Identities = 157/223 (70%), Gaps = 0/223 (0%)
Strand=Plus/Plus
Query 151883 CCTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGT 151942
|||||| | ||| || ||| |||| ||||||||||| ||||||||||| || | | |||
Sbjct 7362814 CCTGAGACGGAGAACCAGACGAAGGGTAGACTCTTTCTGGATGTTGTAGTCAGAAAGAGT 7362873
Query 151943 TCTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCC 152002
|||||||| | || || |||||||| |||||||||||||| | | || ||
Sbjct 7362874 GTGGCCATCTTCCACCTGCTTGCCTGCGAAGATCAGCCTCTGCTGGTCAGGAGGAATGCC 7362933
Query 152003 TTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAG 152062
|| || || || || || || || |||| | | | || ||| || || ||
Sbjct 7362934 CTCTTTATCCTGGATCTTGGCCTTCACTTTCTCAATGGTATCAATGGGCTCCACCTCCAG 7362993
Query 152063 AGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATT 152105
|||| || ||||| || || ||||||| ||||| |||||||
Sbjct 7362994 GATAATGGTCTTGCCGGTCAGGGTCTTCATGAAGATCTGCATT 7363036
>seq91
Length=4965619
Score = 96.9 bits (106), Expect = 8e-15
Identities = 152/218 (70%), Gaps = 0/218 (0%)
Strand=Plus/Plus
Query 151887 AGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTC 151946
||||| | || ||||||||||| ||||| |||||||||||||| || | |||||||
Sbjct 1585558 AGTCTCAATACTAGATGAAGAGTGGACTCCTTTTGGATGTTGTAGTCAGATAAAGTTTGT 1585617
Query 151947 CCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCC 152006
|||||||| || || || || ||||| || || ||||| || | |||||||||
Sbjct 1585618 CCATCTTCCAGCTGCTTACCAGCAAAGATCAGTCTTTGCTGATCAGGTAGCATTCCTTCC 1585677
Query 152007 TTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTA 152066
|| || || || || || ||| | || | | || || || || | || ||
Sbjct 1585678 TTATCCTGGATCTTGGCCTTTACATTTTCCATAGTATCCGAGGGTTCAACCTTGAGTGTG 1585737
Query 152067 ATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104
|| ||||| ||||| || || || | ||| | ||||||
Sbjct 1585738 ATGGTTTTCCCCGTAAGGGTTTTAATGAAAATCTGCAT 1585775
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1152857030432503
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |