Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dipodomys_20ordii_20[refseq_20GCF_5F000151885.1_202014-12-12] 65,193 sequences; 2,236,368,823 total letters Query= NC_032105.1 Length=33562 Score E Sequences producing significant alignments: (Bits) Value seq4931 399 5e-107 >seq4931 Length=27746 Score = 399 bits (442), Expect = 5e-107 Identities = 1264/1932 (65%), Gaps = 58/1932 (3%) Strand=Plus/Plus Query 18795 CAGCAAGCTGCTCCCAACAGGCCAAATTATATTGGCTTTAGAGACAATTTTATTGGCATA 18854 |||||| || || ||||||||||||||||| || ||||| || || ||||| || || Sbjct 16133 CAGCAAAGCGCGCCAAACAGGCCAAATTATATAGGTTTTAGGGATAACTTTATCGGGTTA 16192 Query 18855 ATGTACTACAATAGCACTGGAAACATGGGAGTGCTGGCAGGTCAGGCGTCGCAGTTAAAT 18914 |||| || || || | | | || |||| || | || ||||| |||| ||| | ||| Sbjct 16193 ATGTTTTATAACAGTAATAGCAATTTGGGTGTATTAGCCGGTCAATCGTCACAGCTTAAT 16252 Query 18915 GCCGTGGTTGATTTGCAAGATCGAAACACTGAACTTTCCTATCAATTAATGCTTGACGCC 18974 || || | || | ||||| |||| || ||| | || ||||| | ||| | || Sbjct 16253 GCTGTCATCGACCTTCAAGACAGAAATACAGAATTGTCATATCAGCTTATGTTAGATAAT 16312 Query 18975 TTAGGGGATCGGTCAAGGTACTTTAGTATGTGGAACCAGGCAGTTGACAGTTATGATCAT 19034 ||| ||| | | | || | || ||||||| || || || || ||||||| Sbjct 16313 TTACACGATAGAACTCGATATTACAGCTTGTGGAATCAAGCCGTGGATTCATATGATCCA 16372 Query 19035 GACGTGCGAATTATTGAGAACCACGGAGTAGAAGACGAACTGCCAAACTACTGTTTTCCT 19094 || || ||||| || || || ||||||||||||||||| ||||| || || ||||| Sbjct 16373 GAGGTCCGAATCATAGACAATATTGGAGTAGAAGACGAACTTCCAAATTATTGCTTTCCG 16432 Query 19095 CTTAGCGCCGTTGGAATTGTTAACGAATATTTAGGAATAAAAAGAACAGCCAATGGGACT 19154 ||| | |||| |||| | |||| || || | | || || | | Sbjct 16433 -TTATC-----TGGA--TGTTCTCC--TATT---GATTATA-----CTGC---TGTTAAT 16471 Query 19155 CAGAAAGGAAA--CTATGACAAAGACGATAACATCTCTGCAAAAAATGAAATTGCCGTTG 19212 || || ||| | | || ||| || ||||| |||| | | || | | | Sbjct 16472 CAAAATGGACAAGCAAT--CAATAACAATAACC---CTGCGCAGGTTCTTATAGGCAAAG 16526 Query 19213 GCAACATTTT-TGCTATGGAAATTAACCTGCAGGCCAACTTGTGGAGAAGCTATCTGTAT 19271 | || || ||| |||||||| ||| | ||||||| |||||| | | ||||||| Sbjct 16527 GAAATGTTGAATGC-ATGGAAATCAACATAGCGGCCAACCTGTGGAAGAATTTTCTGTAT 16585 Query 19272 AGCAACGTGGCCCTTTATTTACCCGACAGCTACAAGTACACCCCGGCCAATATCACCCTG 19331 || | || || ||| | ||||| | || || ||| || || ||| | || Sbjct 16586 TCTAATATCGCGCTGTATCTGCCCGATAACTTTAAAACCACTCCCGCAAATGTGGTATTG 16645 Query 19332 CCTACAAATACAAATACC-TATGGCTACATGAACGGAAGAGTTACTGCCCCGGGGTTAGT 19390 || || || | |||| |||||||| | || | ||| ||| | || Sbjct 16646 CCGCAGGAT-CAGCGGCTATATGCTTACATGAATTCTCGCATTCCAGCCGGGGGTCTGGT 16704 Query 19391 AGATATGTTTGTAAACATCGGCGCGCGGTGGTCCCCAGACCCCATGGACAACGTCAATCC 19450 ||| | | | ||||| || | ||||||| ||| ||||||| || ||||| Sbjct 16705 AGAGGATTATATCAACATAGGAACCAGGTGGTCAATAGATGTGATGGACACGGTTAATCC 16764 Query 19451 CTTTAACCACCACCGCAACGCCGGTCTGCGGTACCGGTCTATGTTGTTGGGCAACGGGCG 19510 ||||| || ||| | || | ||| || ||||| ||||| | | || || || || || Sbjct 16765 ATTTAATCATCACAGAAATACTGGTTTGAGGTACAGGTCTCAGCTATTAGGAAATGGTCG 16824 Query 19511 G-ATCGTGCCATTCCACATTCAAGTCCCCCAAAAGTTTTTCGCTATCAAGAACCTACTTC 19569 || | || ||| | ||||| || || ||||||||||| || | || | | |||| Sbjct 16825 CTATGCTTCCTTTC-ATATTCAGGTTCCGCAAAAGTTTTTTGCACTTAAAAGTTTGCTTC 16883 Query 19570 TGCTCCCCGGATCATACACCTACGAGTGGAGCTTCCGCAAGGACGTTAACATGATCTTGC 19629 |||| || ||||| |||| ||||| ||| || | || || || |||||||| |||| Sbjct 16884 TGCTACCGGGATCGTACAGTTACGAATGGTCTTTTAGAAAAGATGTAAACATGATTTTGC 16943 Query 19630 AAAGTACGTTGGGCAACGATCTGCGAGTCGACGGGGCCAGCGTCCGCA----TCGACAGC 19685 | ||||| | ||||| |||||| | | ||||| |||||| | | | |||||| Sbjct 16944 AGAGTACTCTTGGCAATGATCTGAGGGAGGACGG----AGCGTCAGTAACATTTGACAGC 16999 Query 19686 GTCAACCTCTACGCCAACTTTTTCCCCATGGCCCACAATACCGCCTCTACCCTGGAGGCC 19745 | | ||| | || | || || || ||| | || || || || ||||| ||||| | Sbjct 17000 ATTAGCCTATTTGCTACTTTCTTTCCGATGTCTCATAACACTGCTTCTACTCTGGAAACT 17059 Query 19746 ATGCTACGCAACGACACCAACGACCAGTCTTTCAACGACTACCT---CAGCGCGGCCAAC 19802 ||||| ||||| || ||||| ||||| ||| |||||| || |||| | ||| Sbjct 17060 ATGCTTCGCAATGAGGTTAACGATCAGTCCTTCGGCGACTATCTTTCCAGC---GTTAAC 17116 Query 19803 ATGCTCTATCCCATCCCGGCCAACGCCACCAAC-GTGCCCATTTCAATTCCATCGAGAAA 19861 ||||| ||| | || || || | | |||| ||||| || || |||||| | || || Sbjct 17117 ATGCTTTATGCTATTCC-TCCGCATCAAACAACAGTGCCTATCTCTATTCCAGCAAGGAA 17175 Query 19862 CTGGGCCGCGTTCAGGGGGTGGGCATTTACCCGCATTAAGGCCA-AGGAGACTCCGTCCC 19920 ||||| || || || || ||||||||||| | | ||| | | |||| || || || Sbjct 17176 TTGGGCGGCCTTTAGAGGTTGGGCATTTACTAG-ACTAAAACAACAGGAAACACCAACCA 17234 Query 19921 TGGGCTCTGGATTCGATCCCTACTTTGTTTACTCTGGAACCATTCCCTACCTGGACGGAA 19980 | ||||||| ||| || || |||||| ||||| || | || || || ||| | | Sbjct 17235 TTGGCTCTGCATTTGACCCATACTTTAGGTACTCGGGCTCAATCCCGTATTGGGATGCGA 17294 Query 19981 CCTTTTACCTTAAC-CACACCTTCAAGAGACTGTCGATCATGTTTGACTCCTCGGTCAGC 20039 ||||||| ||| | ||||| ||| | || | || |||||| || || || || Sbjct 17295 CCTTTTA-TTTATCTCACACTATCAGAAAGGTGGCCATACAGTTTGATTCTTCAGTAAGT 17353 Query 20040 TGGCCCGGCAACGACCGCTTGCTAACGCCCAACGAGTTTGAGATCAAGCGGGCCGTGGAC 20099 ||||| || || ||| | | ||| || || || ||| | || || | | |||||| Sbjct 17354 TGGCCTGGAAATGACAGACTTTTAATACCTAATGAATTTCACATAAAAAGAGAGGTGGAC 17413 Query 20100 GGAGAGGGCTACAACGTGGCTCAGAGCAACATGACCAAAGACTGGTTCCTCATTCAGATG 20159 | || ||||| ||| ||||||||| || || || || |||| | ||||| ||| Sbjct 17414 GCGGAAGGCTATAACACCTCTCAGAGCATAATTACTAAGGATTGGTATATGATTCAAATG 17473 Query 20160 CTCAGCCACTACAATATCGGCTACCAGGGCTTTTACGTGCCCGAAGGGTACAAGGACCGC 20219 ||| |||||||||||||| ||||| || ||| || | ||| || || || || | Sbjct 17474 CTCGCTCACTACAATATCGGATACCAAGGTTTTCACCTACCCACAGATTATAAAGATAGA 17533 Query 20220 ATGTACTCTTTCTTCCGCAACTTCCAACCCATGAGTCGGCAGGTGGTGGACCCCACCAGT 20279 |||| || || || | || || |||||||| || | || || ||||| || | Sbjct 17534 TTGTATTCCTTTTTAAGAAATTTTGAACCCATGTGTAGACAAGTTGTGGATCCTGGTAAG 17593 Query 20280 TTTAAAGAATACCAGGCCGTGGCCCTTCCCCATCAGCACAACAACTCGGGATTCGTGGGA 20339 || |||| || |||| || ||| ||||||| || || || || || | | Sbjct 17594 ACGGAAAAATATCAACCCGTTGCTCTTAAATATCAGCATAATAATTCAGGTTT--TAAAA 17651 Query 20340 TACAT--GGGCCCCACCATGCGGGAAGGGCAGCCCTATCCCGCCAACTACCCGTATCCCC 20397 ||| || ||| ||| |||| || || |||||| |||| || | || | Sbjct 17652 ACCATTATGGACCCTTTGGGCGACAAGGCCATCCTTATCCCTGTAACTGGCCTTTCCCGC 17711 Query 20398 TGATCGGACCCACGGCCGTGCCCATGCTCACGCAGAAAAAGTTCCTCTGCGACAGGACCA 20457 | |||||| ||| | | | || |||| ||| || | || ||||| || Sbjct 17712 TCATCGGAGAACAGGCAGGTAAAACCATTACTCAGAGAAAATTTTTATGTGACAGAACAC 17771 Query 20458 TGTGGCGCATTCCCTTCTCCAGCAACTTTATGTCCATGGGCGCCCTGACCGATCTGGGAC 20517 ||||| | ||||| |||||| |||||||||||||||||| | || || |||||||||| Sbjct 17772 TGTGGAGGATTCCGTTCTCCTCCAACTTTATGTCCATGGGAACACTAACAGATCTGGGAC 17831 Query 20518 AGAACCTGCTCTACGCCAACTCGGCACACGCCCTGGACATGACTTTTGAGGTGGATCCCA 20577 | || |||| || || || || || || || | |||||||| | || || ||| | | Sbjct 17832 AAAATTTGCTATATGCAAATTCAGCTCATGCTTTAGACATGACAGTCGAAGTAGATTCAA 17891 Query 20578 TGGACGAGCCCACCCTGCTCTACATGCTCTTTGAGGTCTTTGACGTGGTCCGCGTGCACC 20637 |||| || || || ||| ||||| ||||| || |||||| || | | ||||| | Sbjct 17892 TGGAGGAACCAACTTATCTCATGATGCTATTTGAAGTATTTGACATGTGCAGAGTGCATC 17951 Query 20638 AGCCACACCGCGGCATCATCGAGGCCGTCTACCTCCGCACGCCGTTCTCCGCCGGTAACG 20697 |||| || || || |||| || | | || || | || || || || || ||||||| Sbjct 17952 AGCCTCAACGAGGTGTCATAGAAGTTATTTATCTAAGAACCCCCTTTTCGGCAGGTAACG 18011 Query 20698 CCACCACATAAA 20709 || | ||||||| Sbjct 18012 CCGCAACATAAA 18023 Score = 116 bits (128), Expect = 8e-22 Identities = 201/292 (69%), Gaps = 0/292 (0%) Strand=Plus/Plus Query 4127 TGATGGCCACGGGCATGCCCTTAGTGTAGGTGTTGATGAAGCGGTTCATCTGGGAGGGGT 4186 |||| || | ||| | ||| ||||| || || || || || | ||| | ||| | ||| | Sbjct 3698 TGATTGCTAAGGGTAGGCCTTTAGTATAAGTATTAATAAATCTGTTTAGCTGAGCGGGTT 3757 Query 4187 GCATGCGGGGGCTGATCAGGTGCATTTTGGCCTGGATCTTGAGGTTGGCGATGTTGCCGC 4246 |||| |||||| | | || ||| || || || || || ||| || || || | Sbjct 3758 GCATTTTGGGGCTCAGTATATGATATTTAGCTTGAATTTTTAGTGTGGATATATTTCCAC 3817 Query 4247 CGAGGTCCCTGCGCGGGTTCATGTTATGCAGGACCACCAGCACAGAGTACCCGGTGCACC 4306 | || | ||||||||||| ||||| | ||||| | || | |||||||| ||||| Sbjct 3818 TTAAATCTTTTCGCGGGTTCATATTATGTAATACCACAAACAGATAGTACCCGCTGCACG 3877 Query 4307 TGGGAAATTTATCATGCAACTTGGAGGGGAAGGCGTGAAAAAACTTGGCCACCCCCTTGT 4366 |||| |||| ||| | || || || || ||||||||||| || || | ||| Sbjct 3878 AGGGATATTTTTCAAATAGTTTTGAAGGAAACGCGTGAAAAAATTTTGCAATAGGGCTGT 3937 Query 4367 GACCTCCCAGGTTTTCCATGCATTCGTCCATAATGATGGCGATGGGTCCGGT 4418 ||||| | |||||||| || || || || || ||||| ||||||||||| Sbjct 3938 TCCCTCCTAAATTTTCCATACACTCATCAATGATAATGGCTATGGGTCCGGT 3989 Score = 116 bits (128), Expect = 8e-22 Identities = 135/182 (74%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 25439 CTGAGAAACAGGATTTTTCCCACACTGTACGCGATCTTCCAGCAGAGCCGAGGAAAGCAC 25498 || ||||| | ||| ||||| || |||| || ||||| || || |||| || || | Sbjct 22149 CTAAGAAATAAGATATTTCCAACTTTGTATGCTATCTTTCAACAATGCCGCGGTAAAAAA 22208 Query 25499 CAGGAGCTCAAAATCAAAAACCGTACCCTGCGGTCTCTTACCAGAAGCTGTCTTTACCAC 25558 | | ||||| ||||| || || | | || ||||||| ||||||||||| ||| Sbjct 22209 TGTCAACCTAAAATTAAAAATCGCACTTTAAGATCACTTACCAAGAGCTGTCTTTATCAC 22268 Query 25559 AAGAGCGAAGACCAGCTGCAGAGAACGCTGGAAGACGCAGAGGCGCTCTTCCACAAGTAC 25618 || | |||||| ||||||||||| || |||||||||||||||||||| | |||||| | Sbjct 22269 AAAAACGAAGAACAGCTGCAGAGGACTCTGGAAGACGCAGAGGCGCTACTGAACAAGTGC 22328 Query 25619 TG 25620 || Sbjct 22329 TG 22330 Score = 113 bits (124), Expect = 1e-20 Identities = 206/299 (69%), Gaps = 2/299 (1%) Strand=Plus/Plus Query 5489 ATGCTTACCTCTGGTCTCCATTAGGCGGTGTCCTCGCTCTGTGACAAAAAGACTGTCGGT 5548 |||||||||| |||||||||| || | || ||| ||||| || || | |||||| || Sbjct 5054 ATGCTTACCTTTGGTCTCCATCAGTCTATGCCCTGTTTCTGTCACGAACAAACTGTCAGT 5113 Query 5549 GTCCCCGTAGACCGACTTCAGCTCCCT-CGCTTCCAGGGGAAGCCCCTTGTCCTCGGCGT 5607 || ||||| | ||| || | || || | ||| || |||| || || | | Sbjct 5114 ATCTCCGTAAATCGATTTTAAAATTCTGCGGTCCCAAGGTCGTCCCCAA-TCTTCAGAAT 5172 Query 5608 AAAGAAAGTCGGCCCACTCTGAAACAAAGGCCCTGGTCCAAGCCAGTACAAAGGAGGCGA 5667 | | ||| || ||||| || ||| || || | |||||| || || ||||| || |||| Sbjct 5173 ATAAAAATTCCGCCCATTCGGAAGTGAAAGCGCGGGTCCAGGCGAGAACAAATGACGCGA 5232 Query 5668 TGTGGGAGGGGTATCTGTCATTTTCCACCAGTGGGTCGGTTTTTTCCAAAGTGTGAAGGC 5727 | ||||| ||||| | || ||| || | ||||| || ||||| | | ||||||| Sbjct 5233 TTTGGGATGGGTAGCGGTTATTATCTATTTGTGGGGAAGTATTTTCTATCATTTGAAGGC 5292 Query 5728 ACATGTCCCCCTCGTCCGCATCCAGGAAGGTGATTGGCTTAAAGGTATAGTTCACGTGA 5786 | | || ||||| | | || ||| |||||||||||||| |||| |||||||| Sbjct 5293 ATAGGTGAGAATCGTCAGATTGCAAGAAAGTGATTGGCTTAAACTTATATGTCACGTGA 5351 Score = 96.9 bits (106), Expect = 7e-16 Identities = 137/190 (72%), Gaps = 2/190 (1%) Strand=Plus/Plus Query 17868 AAGATGGCCACTCCATCGATGATGCCGCAGTGGTCTTACATGCACATCGCCGGGCAGGAC 17927 |||||||||||||| |||||| | ||||| ||||||||| | || ||||| || || || Sbjct 15311 AAGATGGCCACTCCCTCGATGCTCCCGCAATGGTCTTACTTACATATCGCAGGACAAGAT 15370 Query 17928 GCCTCGGAGTACCTGAGCCCGGGTCTGGTG-CAGTTTGCCCGCGCCACCGAGACCTACTT 17986 || || || || | | | | | | ||| || ||||| |||| ||||| || ||||| Sbjct 15371 GCTTCAGAATA-TTTATCTCCTGCGTTGTGTCAATTTGCAAGCGCAACCGAAACGTACTT 15429 Query 17987 CTCTCTGGGTAACAAGTTCAGGAACCCCACCGTGGCGCCGACCCACGACGTCACCACCGA 18046 || || | | || || || || || || || |||||||| ||||| || || || || Sbjct 15430 TTCCCTAAGCGATAAATTTAGAAATCCGACGGTTGCGCCGACACACGATGTAACTACGGA 15489 Query 18047 CCGCTCGCAG 18056 | |||||| Sbjct 15490 AAGATCGCAG 15499 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 107193749854984