Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Dipodomys_20ordii_20[refseq_20GCF_5F000151885.1_202014-12-12]
65,193 sequences; 2,236,368,823 total letters
Query= NC_032105.1
Length=33562
Score E
Sequences producing significant alignments: (Bits) Value
seq4931 399 5e-107
>seq4931
Length=27746
Score = 399 bits (442), Expect = 5e-107
Identities = 1264/1932 (65%), Gaps = 58/1932 (3%)
Strand=Plus/Plus
Query 18795 CAGCAAGCTGCTCCCAACAGGCCAAATTATATTGGCTTTAGAGACAATTTTATTGGCATA 18854
|||||| || || ||||||||||||||||| || ||||| || || ||||| || ||
Sbjct 16133 CAGCAAAGCGCGCCAAACAGGCCAAATTATATAGGTTTTAGGGATAACTTTATCGGGTTA 16192
Query 18855 ATGTACTACAATAGCACTGGAAACATGGGAGTGCTGGCAGGTCAGGCGTCGCAGTTAAAT 18914
|||| || || || | | | || |||| || | || ||||| |||| ||| | |||
Sbjct 16193 ATGTTTTATAACAGTAATAGCAATTTGGGTGTATTAGCCGGTCAATCGTCACAGCTTAAT 16252
Query 18915 GCCGTGGTTGATTTGCAAGATCGAAACACTGAACTTTCCTATCAATTAATGCTTGACGCC 18974
|| || | || | ||||| |||| || ||| | || ||||| | ||| | ||
Sbjct 16253 GCTGTCATCGACCTTCAAGACAGAAATACAGAATTGTCATATCAGCTTATGTTAGATAAT 16312
Query 18975 TTAGGGGATCGGTCAAGGTACTTTAGTATGTGGAACCAGGCAGTTGACAGTTATGATCAT 19034
||| ||| | | | || | || ||||||| || || || || |||||||
Sbjct 16313 TTACACGATAGAACTCGATATTACAGCTTGTGGAATCAAGCCGTGGATTCATATGATCCA 16372
Query 19035 GACGTGCGAATTATTGAGAACCACGGAGTAGAAGACGAACTGCCAAACTACTGTTTTCCT 19094
|| || ||||| || || || ||||||||||||||||| ||||| || || |||||
Sbjct 16373 GAGGTCCGAATCATAGACAATATTGGAGTAGAAGACGAACTTCCAAATTATTGCTTTCCG 16432
Query 19095 CTTAGCGCCGTTGGAATTGTTAACGAATATTTAGGAATAAAAAGAACAGCCAATGGGACT 19154
||| | |||| |||| | |||| || || | | || || | |
Sbjct 16433 -TTATC-----TGGA--TGTTCTCC--TATT---GATTATA-----CTGC---TGTTAAT 16471
Query 19155 CAGAAAGGAAA--CTATGACAAAGACGATAACATCTCTGCAAAAAATGAAATTGCCGTTG 19212
|| || ||| | | || ||| || ||||| |||| | | || | | |
Sbjct 16472 CAAAATGGACAAGCAAT--CAATAACAATAACC---CTGCGCAGGTTCTTATAGGCAAAG 16526
Query 19213 GCAACATTTT-TGCTATGGAAATTAACCTGCAGGCCAACTTGTGGAGAAGCTATCTGTAT 19271
| || || ||| |||||||| ||| | ||||||| |||||| | | |||||||
Sbjct 16527 GAAATGTTGAATGC-ATGGAAATCAACATAGCGGCCAACCTGTGGAAGAATTTTCTGTAT 16585
Query 19272 AGCAACGTGGCCCTTTATTTACCCGACAGCTACAAGTACACCCCGGCCAATATCACCCTG 19331
|| | || || ||| | ||||| | || || ||| || || ||| | ||
Sbjct 16586 TCTAATATCGCGCTGTATCTGCCCGATAACTTTAAAACCACTCCCGCAAATGTGGTATTG 16645
Query 19332 CCTACAAATACAAATACC-TATGGCTACATGAACGGAAGAGTTACTGCCCCGGGGTTAGT 19390
|| || || | |||| |||||||| | || | ||| ||| | ||
Sbjct 16646 CCGCAGGAT-CAGCGGCTATATGCTTACATGAATTCTCGCATTCCAGCCGGGGGTCTGGT 16704
Query 19391 AGATATGTTTGTAAACATCGGCGCGCGGTGGTCCCCAGACCCCATGGACAACGTCAATCC 19450
||| | | | ||||| || | ||||||| ||| ||||||| || |||||
Sbjct 16705 AGAGGATTATATCAACATAGGAACCAGGTGGTCAATAGATGTGATGGACACGGTTAATCC 16764
Query 19451 CTTTAACCACCACCGCAACGCCGGTCTGCGGTACCGGTCTATGTTGTTGGGCAACGGGCG 19510
||||| || ||| | || | ||| || ||||| ||||| | | || || || || ||
Sbjct 16765 ATTTAATCATCACAGAAATACTGGTTTGAGGTACAGGTCTCAGCTATTAGGAAATGGTCG 16824
Query 19511 G-ATCGTGCCATTCCACATTCAAGTCCCCCAAAAGTTTTTCGCTATCAAGAACCTACTTC 19569
|| | || ||| | ||||| || || ||||||||||| || | || | | ||||
Sbjct 16825 CTATGCTTCCTTTC-ATATTCAGGTTCCGCAAAAGTTTTTTGCACTTAAAAGTTTGCTTC 16883
Query 19570 TGCTCCCCGGATCATACACCTACGAGTGGAGCTTCCGCAAGGACGTTAACATGATCTTGC 19629
|||| || ||||| |||| ||||| ||| || | || || || |||||||| ||||
Sbjct 16884 TGCTACCGGGATCGTACAGTTACGAATGGTCTTTTAGAAAAGATGTAAACATGATTTTGC 16943
Query 19630 AAAGTACGTTGGGCAACGATCTGCGAGTCGACGGGGCCAGCGTCCGCA----TCGACAGC 19685
| ||||| | ||||| |||||| | | ||||| |||||| | | | ||||||
Sbjct 16944 AGAGTACTCTTGGCAATGATCTGAGGGAGGACGG----AGCGTCAGTAACATTTGACAGC 16999
Query 19686 GTCAACCTCTACGCCAACTTTTTCCCCATGGCCCACAATACCGCCTCTACCCTGGAGGCC 19745
| | ||| | || | || || || ||| | || || || || ||||| ||||| |
Sbjct 17000 ATTAGCCTATTTGCTACTTTCTTTCCGATGTCTCATAACACTGCTTCTACTCTGGAAACT 17059
Query 19746 ATGCTACGCAACGACACCAACGACCAGTCTTTCAACGACTACCT---CAGCGCGGCCAAC 19802
||||| ||||| || ||||| ||||| ||| |||||| || |||| | |||
Sbjct 17060 ATGCTTCGCAATGAGGTTAACGATCAGTCCTTCGGCGACTATCTTTCCAGC---GTTAAC 17116
Query 19803 ATGCTCTATCCCATCCCGGCCAACGCCACCAAC-GTGCCCATTTCAATTCCATCGAGAAA 19861
||||| ||| | || || || | | |||| ||||| || || |||||| | || ||
Sbjct 17117 ATGCTTTATGCTATTCC-TCCGCATCAAACAACAGTGCCTATCTCTATTCCAGCAAGGAA 17175
Query 19862 CTGGGCCGCGTTCAGGGGGTGGGCATTTACCCGCATTAAGGCCA-AGGAGACTCCGTCCC 19920
||||| || || || || ||||||||||| | | ||| | | |||| || || ||
Sbjct 17176 TTGGGCGGCCTTTAGAGGTTGGGCATTTACTAG-ACTAAAACAACAGGAAACACCAACCA 17234
Query 19921 TGGGCTCTGGATTCGATCCCTACTTTGTTTACTCTGGAACCATTCCCTACCTGGACGGAA 19980
| ||||||| ||| || || |||||| ||||| || | || || || ||| | |
Sbjct 17235 TTGGCTCTGCATTTGACCCATACTTTAGGTACTCGGGCTCAATCCCGTATTGGGATGCGA 17294
Query 19981 CCTTTTACCTTAAC-CACACCTTCAAGAGACTGTCGATCATGTTTGACTCCTCGGTCAGC 20039
||||||| ||| | ||||| ||| | || | || |||||| || || || ||
Sbjct 17295 CCTTTTA-TTTATCTCACACTATCAGAAAGGTGGCCATACAGTTTGATTCTTCAGTAAGT 17353
Query 20040 TGGCCCGGCAACGACCGCTTGCTAACGCCCAACGAGTTTGAGATCAAGCGGGCCGTGGAC 20099
||||| || || ||| | | ||| || || || ||| | || || | | ||||||
Sbjct 17354 TGGCCTGGAAATGACAGACTTTTAATACCTAATGAATTTCACATAAAAAGAGAGGTGGAC 17413
Query 20100 GGAGAGGGCTACAACGTGGCTCAGAGCAACATGACCAAAGACTGGTTCCTCATTCAGATG 20159
| || ||||| ||| ||||||||| || || || || |||| | ||||| |||
Sbjct 17414 GCGGAAGGCTATAACACCTCTCAGAGCATAATTACTAAGGATTGGTATATGATTCAAATG 17473
Query 20160 CTCAGCCACTACAATATCGGCTACCAGGGCTTTTACGTGCCCGAAGGGTACAAGGACCGC 20219
||| |||||||||||||| ||||| || ||| || | ||| || || || || |
Sbjct 17474 CTCGCTCACTACAATATCGGATACCAAGGTTTTCACCTACCCACAGATTATAAAGATAGA 17533
Query 20220 ATGTACTCTTTCTTCCGCAACTTCCAACCCATGAGTCGGCAGGTGGTGGACCCCACCAGT 20279
|||| || || || | || || |||||||| || | || || ||||| || |
Sbjct 17534 TTGTATTCCTTTTTAAGAAATTTTGAACCCATGTGTAGACAAGTTGTGGATCCTGGTAAG 17593
Query 20280 TTTAAAGAATACCAGGCCGTGGCCCTTCCCCATCAGCACAACAACTCGGGATTCGTGGGA 20339
|| |||| || |||| || ||| ||||||| || || || || || | |
Sbjct 17594 ACGGAAAAATATCAACCCGTTGCTCTTAAATATCAGCATAATAATTCAGGTTT--TAAAA 17651
Query 20340 TACAT--GGGCCCCACCATGCGGGAAGGGCAGCCCTATCCCGCCAACTACCCGTATCCCC 20397
||| || ||| ||| |||| || || |||||| |||| || | || |
Sbjct 17652 ACCATTATGGACCCTTTGGGCGACAAGGCCATCCTTATCCCTGTAACTGGCCTTTCCCGC 17711
Query 20398 TGATCGGACCCACGGCCGTGCCCATGCTCACGCAGAAAAAGTTCCTCTGCGACAGGACCA 20457
| |||||| ||| | | | || |||| ||| || | || ||||| ||
Sbjct 17712 TCATCGGAGAACAGGCAGGTAAAACCATTACTCAGAGAAAATTTTTATGTGACAGAACAC 17771
Query 20458 TGTGGCGCATTCCCTTCTCCAGCAACTTTATGTCCATGGGCGCCCTGACCGATCTGGGAC 20517
||||| | ||||| |||||| |||||||||||||||||| | || || ||||||||||
Sbjct 17772 TGTGGAGGATTCCGTTCTCCTCCAACTTTATGTCCATGGGAACACTAACAGATCTGGGAC 17831
Query 20518 AGAACCTGCTCTACGCCAACTCGGCACACGCCCTGGACATGACTTTTGAGGTGGATCCCA 20577
| || |||| || || || || || || || | |||||||| | || || ||| | |
Sbjct 17832 AAAATTTGCTATATGCAAATTCAGCTCATGCTTTAGACATGACAGTCGAAGTAGATTCAA 17891
Query 20578 TGGACGAGCCCACCCTGCTCTACATGCTCTTTGAGGTCTTTGACGTGGTCCGCGTGCACC 20637
|||| || || || ||| ||||| ||||| || |||||| || | | ||||| |
Sbjct 17892 TGGAGGAACCAACTTATCTCATGATGCTATTTGAAGTATTTGACATGTGCAGAGTGCATC 17951
Query 20638 AGCCACACCGCGGCATCATCGAGGCCGTCTACCTCCGCACGCCGTTCTCCGCCGGTAACG 20697
|||| || || || |||| || | | || || | || || || || || |||||||
Sbjct 17952 AGCCTCAACGAGGTGTCATAGAAGTTATTTATCTAAGAACCCCCTTTTCGGCAGGTAACG 18011
Query 20698 CCACCACATAAA 20709
|| | |||||||
Sbjct 18012 CCGCAACATAAA 18023
Score = 116 bits (128), Expect = 8e-22
Identities = 201/292 (69%), Gaps = 0/292 (0%)
Strand=Plus/Plus
Query 4127 TGATGGCCACGGGCATGCCCTTAGTGTAGGTGTTGATGAAGCGGTTCATCTGGGAGGGGT 4186
|||| || | ||| | ||| ||||| || || || || || | ||| | ||| | ||| |
Sbjct 3698 TGATTGCTAAGGGTAGGCCTTTAGTATAAGTATTAATAAATCTGTTTAGCTGAGCGGGTT 3757
Query 4187 GCATGCGGGGGCTGATCAGGTGCATTTTGGCCTGGATCTTGAGGTTGGCGATGTTGCCGC 4246
|||| |||||| | | || ||| || || || || || ||| || || || |
Sbjct 3758 GCATTTTGGGGCTCAGTATATGATATTTAGCTTGAATTTTTAGTGTGGATATATTTCCAC 3817
Query 4247 CGAGGTCCCTGCGCGGGTTCATGTTATGCAGGACCACCAGCACAGAGTACCCGGTGCACC 4306
| || | ||||||||||| ||||| | ||||| | || | |||||||| |||||
Sbjct 3818 TTAAATCTTTTCGCGGGTTCATATTATGTAATACCACAAACAGATAGTACCCGCTGCACG 3877
Query 4307 TGGGAAATTTATCATGCAACTTGGAGGGGAAGGCGTGAAAAAACTTGGCCACCCCCTTGT 4366
|||| |||| ||| | || || || || ||||||||||| || || | |||
Sbjct 3878 AGGGATATTTTTCAAATAGTTTTGAAGGAAACGCGTGAAAAAATTTTGCAATAGGGCTGT 3937
Query 4367 GACCTCCCAGGTTTTCCATGCATTCGTCCATAATGATGGCGATGGGTCCGGT 4418
||||| | |||||||| || || || || || ||||| |||||||||||
Sbjct 3938 TCCCTCCTAAATTTTCCATACACTCATCAATGATAATGGCTATGGGTCCGGT 3989
Score = 116 bits (128), Expect = 8e-22
Identities = 135/182 (74%), Gaps = 0/182 (0%)
Strand=Plus/Plus
Query 25439 CTGAGAAACAGGATTTTTCCCACACTGTACGCGATCTTCCAGCAGAGCCGAGGAAAGCAC 25498
|| ||||| | ||| ||||| || |||| || ||||| || || |||| || || |
Sbjct 22149 CTAAGAAATAAGATATTTCCAACTTTGTATGCTATCTTTCAACAATGCCGCGGTAAAAAA 22208
Query 25499 CAGGAGCTCAAAATCAAAAACCGTACCCTGCGGTCTCTTACCAGAAGCTGTCTTTACCAC 25558
| | ||||| ||||| || || | | || ||||||| ||||||||||| |||
Sbjct 22209 TGTCAACCTAAAATTAAAAATCGCACTTTAAGATCACTTACCAAGAGCTGTCTTTATCAC 22268
Query 25559 AAGAGCGAAGACCAGCTGCAGAGAACGCTGGAAGACGCAGAGGCGCTCTTCCACAAGTAC 25618
|| | |||||| ||||||||||| || |||||||||||||||||||| | |||||| |
Sbjct 22269 AAAAACGAAGAACAGCTGCAGAGGACTCTGGAAGACGCAGAGGCGCTACTGAACAAGTGC 22328
Query 25619 TG 25620
||
Sbjct 22329 TG 22330
Score = 113 bits (124), Expect = 1e-20
Identities = 206/299 (69%), Gaps = 2/299 (1%)
Strand=Plus/Plus
Query 5489 ATGCTTACCTCTGGTCTCCATTAGGCGGTGTCCTCGCTCTGTGACAAAAAGACTGTCGGT 5548
|||||||||| |||||||||| || | || ||| ||||| || || | |||||| ||
Sbjct 5054 ATGCTTACCTTTGGTCTCCATCAGTCTATGCCCTGTTTCTGTCACGAACAAACTGTCAGT 5113
Query 5549 GTCCCCGTAGACCGACTTCAGCTCCCT-CGCTTCCAGGGGAAGCCCCTTGTCCTCGGCGT 5607
|| ||||| | ||| || | || || | ||| || |||| || || | |
Sbjct 5114 ATCTCCGTAAATCGATTTTAAAATTCTGCGGTCCCAAGGTCGTCCCCAA-TCTTCAGAAT 5172
Query 5608 AAAGAAAGTCGGCCCACTCTGAAACAAAGGCCCTGGTCCAAGCCAGTACAAAGGAGGCGA 5667
| | ||| || ||||| || ||| || || | |||||| || || ||||| || ||||
Sbjct 5173 ATAAAAATTCCGCCCATTCGGAAGTGAAAGCGCGGGTCCAGGCGAGAACAAATGACGCGA 5232
Query 5668 TGTGGGAGGGGTATCTGTCATTTTCCACCAGTGGGTCGGTTTTTTCCAAAGTGTGAAGGC 5727
| ||||| ||||| | || ||| || | ||||| || ||||| | | |||||||
Sbjct 5233 TTTGGGATGGGTAGCGGTTATTATCTATTTGTGGGGAAGTATTTTCTATCATTTGAAGGC 5292
Query 5728 ACATGTCCCCCTCGTCCGCATCCAGGAAGGTGATTGGCTTAAAGGTATAGTTCACGTGA 5786
| | || ||||| | | || ||| |||||||||||||| |||| ||||||||
Sbjct 5293 ATAGGTGAGAATCGTCAGATTGCAAGAAAGTGATTGGCTTAAACTTATATGTCACGTGA 5351
Score = 96.9 bits (106), Expect = 7e-16
Identities = 137/190 (72%), Gaps = 2/190 (1%)
Strand=Plus/Plus
Query 17868 AAGATGGCCACTCCATCGATGATGCCGCAGTGGTCTTACATGCACATCGCCGGGCAGGAC 17927
|||||||||||||| |||||| | ||||| ||||||||| | || ||||| || || ||
Sbjct 15311 AAGATGGCCACTCCCTCGATGCTCCCGCAATGGTCTTACTTACATATCGCAGGACAAGAT 15370
Query 17928 GCCTCGGAGTACCTGAGCCCGGGTCTGGTG-CAGTTTGCCCGCGCCACCGAGACCTACTT 17986
|| || || || | | | | | | ||| || ||||| |||| ||||| || |||||
Sbjct 15371 GCTTCAGAATA-TTTATCTCCTGCGTTGTGTCAATTTGCAAGCGCAACCGAAACGTACTT 15429
Query 17987 CTCTCTGGGTAACAAGTTCAGGAACCCCACCGTGGCGCCGACCCACGACGTCACCACCGA 18046
|| || | | || || || || || || || |||||||| ||||| || || || ||
Sbjct 15430 TTCCCTAAGCGATAAATTTAGAAATCCGACGGTTGCGCCGACACACGATGTAACTACGGA 15489
Query 18047 CCGCTCGCAG 18056
| ||||||
Sbjct 15490 AAGATCGCAG 15499
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 107193749854984
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |