Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Dipodomys_20ordii_20[refseq_20GCF_5F000151885.1_202014-12-12]
65,193 sequences; 2,236,368,823 total letters
Query= NC_032111.1
Length=163005
Score E
Sequences producing significant alignments: (Bits) Value
seq31 104 2e-17
seq117 98.7 1e-15
seq35 98.7 1e-15
seq26 98.7 1e-15
seq1 96.9 4e-15
seq143 93.3 4e-14
seq120 93.3 4e-14
seq17 93.3 4e-14
seq14 91.5 2e-13
seq79 86.0 7e-12
seq2 86.0 7e-12
seq47 84.2 2e-11
seq33 82.4 8e-11
seq11 82.4 8e-11
seq7 82.4 8e-11
>seq31
Length=11629466
Score = 104 bits (114), Expect = 2e-17
Identities = 142/194 (73%), Gaps = 11/194 (6%)
Strand=Plus/Minus
Query 8431 CTCAGCCTCCAGAGTAGCTGGGATTACAGGCAAAAGCCAC---CAC---GCCAAGCTAAT 8484
|||||| ||| |||||||| |||||||||||| |||||| || ||||| |
Sbjct 7576348 CTCAGCTTCCTGAGTAGCTAGGATTACAGGCATGAGCCACTGGTACTTGGCCAAAACTTT 7576289
Query 8485 TTTTGTATTTTTAGTAGA--GAGAGGGTTTCACCATGTTG-GCCAGGCTGGTCTCGAACT 8541
|||| | ||||| || | |||| ||| |||| |||||| ||||||||||||| || |
Sbjct 7576288 TTTTTTTTTTTTTTTACATGGAGATGGTCTCACTATGTTGTTCCAGGCTGGTCTCAAATT 7576229
Query 8542 CCTGACCTCATGTGATCCACCTGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGCATGAG 8601
|||| |||| ||||| |||| || |||| ||| |||||||||||| | || ||
Sbjct 7576228 CCTGGGCTCAAGTGAT--ACCTATCTTAGCCTTTCAAGGTGCTGGGATTATATGCTTGTC 7576171
Query 8602 CCACCGCGCCTGGC 8615
||| | | | ||||
Sbjct 7576170 CCATCACACTTGGC 7576157
>seq117
Length=5353375
Score = 98.7 bits (108), Expect = 1e-15
Identities = 137/186 (74%), Gaps = 17/186 (9%)
Strand=Plus/Plus
Query 8431 CTCAGCCTCCAGAGTAGCTGGGATTACAGGCAAAAGCCACCA-CGCCAAGCTAATTTTTG 8489
|||||||||| |||||||| |||||||||||| |||| |||| ||| |||| | |||||
Sbjct 1824684 CTCAGCCTCCTGAGTAGCTAGGATTACAGGCATAAGCTACCAGTGCCCAGCTTA-TTTTG 1824742
Query 8490 TATTTTTAGTAGAGAGAGGGTTTCAC-CATGTTGGCCAGGCTGGTCTCGAACTCCTGACC 8548
| ||| |||| |||| |||| | ||| ||||| ||| || ||||| |
Sbjct 1824743 TTTTT------GAGACAGGGCCTCACTAACTTTGTCCAGGTTGGCCTTGAACT------C 1824790
Query 8549 TCATGTGATCCACCTGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGCATGAGCCACCGC 8608
|| || ||||| ||||||| |||||| | | |||||||| ||||||| ||||| |
Sbjct 1824791 TC-TG-GATCCTTCTGCCTCCACCTCCCCAGTAGTTGGGATTATAGGCATGTACCACCAC 1824848
Query 8609 GCCTGG 8614
|||||
Sbjct 1824849 ACCTGG 1824854
>seq35
Length=13989929
Score = 98.7 bits (108), Expect = 1e-15
Identities = 138/192 (72%), Gaps = 14/192 (7%)
Strand=Plus/Minus
Query 8431 CTCAGCCTCCAGAGTAGCTGGGATTACAGGCAAAAGCCACCAC-GCCAAGCTAATTTTTG 8489
|||||||||| |||||||| |||||| ||| | || ||||| ||| || | |||
Sbjct 9369829 CTCAGCCTCCTGAGTAGCTAGGATTAGAGGTATGAGTCACCAGTGCCCAGATTTGCTTTT 9369770
Query 8490 TATTTTTAGTAGAGAGAGGGTTTCACCATGTTGGCCAGGCTGGTCTCGAACTCCTGACCT 8549
| ||||| | ||| ||||| || | | | | |||||||| ||| ||||| |
Sbjct 9369769 TTTTTTTTTTTAAGATAGGGTCTCTCTACATAGCCCAGGCTG-------ACTTCTGACTT 9369717
Query 8550 CATGTGATCCACCTGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGCATGAGCCACCGCG 8609
||||| |||||||| || |||||| |||||||||||||||||| | || ||| |
Sbjct 9369716 -----GATCCTCCTGCCTCAGCTTCCCAA-GTGCTGGGATTACAGGCACGTGCTACCACA 9369663
Query 8610 CCTGGCCCTTTA 8621
|||||| | |||
Sbjct 9369662 CCTGGCTCATTA 9369651
Score = 82.4 bits (90), Expect = 8e-11
Identities = 78/100 (78%), Gaps = 0/100 (0%)
Strand=Plus/Minus
Query 8507 GGGTTTCACCATGTTGGCCAGGCTGGTCTCGAACTCCTGACCTCATGTGATCCACCTGCC 8566
|||| || | |||||| |||||||||||||||| || || |||| || |||| ||||||
Sbjct 9519404 GGGTATCGCTATGTTGCCCAGGCTGGTCTCGAATTCATGGGCTCAAGTAATCCTCCTGCC 9519345
Query 8567 TCGGCCTCCCAAAGTGCTGGGATTACAGGCATGAGCCACC 8606
| || |||||| ||||||| || || |||| | ||||
Sbjct 9519344 TATGCTTCCCAAGCAGCTGGGACTATAGACATGTGTCACC 9519305
>seq26
Length=16019130
Score = 98.7 bits (108), Expect = 1e-15
Identities = 125/168 (74%), Gaps = 7/168 (4%)
Strand=Plus/Minus
Query 8431 CTCAGCCTCCAGAGTAGCTGGGATTACAGGCAAAAGCCACCA-CGCCAAGCTAATTTTTG 8489
|||||||||| |||||||| ||||||||||| |||||||| |||| || |||||
Sbjct 12075708 CTCAGCCTCCTGAGTAGCTAGGATTACAGGCGTGAGCCACCAGCGCCCGGC--CTTTTTT 12075651
Query 8490 TATTTTTAGTAGAGAGAGGGTTTCACCATGTTGGCCAGGCTGGTCTCGAACTCCTGACCT 8549
| ||||| || | | || | | |||||| ||||||| |||| |||||||| ||
Sbjct 12075650 TTTTTTTTTTA---AATGAGTCTTATTATGTTGCCCAGGCTACTCTCCAACTCCTGCACT 12075594
Query 8550 CATGTGATCCACCTGCCTCGGCCTCCCAAAG-TGCTGGGATTACAGGC 8596
|| |||||| || |||| ||| || ||| ||| |||||||||||
Sbjct 12075593 CAATTGATCCTCCCACCTCAGCCCCCTTAAGAAGCTAGGATTACAGGC 12075546
>seq1
Length=68039765
Score = 96.9 bits (106), Expect = 4e-15
Identities = 135/184 (73%), Gaps = 8/184 (4%)
Strand=Plus/Minus
Query 8431 CTCAGCCTCCAGAGTAGCTGGGATTACAGGCAAAAGCCACCA-CGCCAAGCTAATTTTTG 8489
||||||||| |||||||| ||||||||||| |||||||| |||| ||| | |||
Sbjct 65369412 CTCAGCCTCTTGAGTAGCTAGGATTACAGGCGTGAGCCACCAGCGCCTGGCT--TCTTTC 65369355
Query 8490 TATTTTTAGTAGAGAGAGGGTTTCACCATGTTGGCCAGGCTGGTCTCGAACTCCTGACCT 8549
| ||| | || ||| || | ||||| | |||||||||| | |||||||| ||
Sbjct 65369354 CTTCTTTCTTTCTGATGGGGACTCGCTATGTTCCCTAGGCTGGTCTAG-ACTCCTGAGCT 65369296
Query 8550 CATGTGATCCACCTGCCTCGGCCTCCCAAAGTGCTGGGATTACAGG--CATGAGCCACCG 8607
|| ||| ||| ||||| || | |||| || ||||||| |||||| ||||| |||||
Sbjct 65369295 CAAGTGCTCCTCCTGCTTCAGTCTCCAGAATAGCTGGGACTACAGGTACATGA--CACCG 65369238
Query 8608 CGCC 8611
|||
Sbjct 65369237 TGCC 65369234
>seq143
Length=3461121
Score = 93.3 bits (102), Expect = 4e-14
Identities = 129/177 (73%), Gaps = 18/177 (10%)
Strand=Plus/Minus
Query 8431 CTCAGCCTCCAGAGTAGCTGGGATTACAGGCAAAAGCCACCA-CGCCAAGCTAATTTTTG 8489
|||||||||| |||||||| ||||||||||| ||||||| |||| ||| || | |
Sbjct 1478406 CTCAGCCTCCTGAGTAGCTAGGATTACAGGCGTGAGCCACCGGCGCCT-GCTTATATA-G 1478349
Query 8490 TATTTTTAGTAGAGAGAGGGTTTCACCATGTTGG-CCAGGCTGGTCTCGAACTCCTGACC 8548
| ||||| |||||||||| | | || | ||||||||| ||| ||||| ||
Sbjct 1478348 TGTTTTT----GAGAGAGGGTCTAGGTAACTTTGTCCAGGCTGGCCTCAAACTCTAGA-- 1478295
Query 8549 TCATGTGATCCACCTGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGCATGAGCCAC 8605
|||||||||||| || | | || || ||||||||||||||||| |||||
Sbjct 1478294 --------TCCACCTGCCTCTGCTTTCTAAGGTACTGGGATTACAGGCATGTGCCAC 1478246
>seq120
Length=4345326
Score = 93.3 bits (102), Expect = 4e-14
Identities = 131/180 (73%), Gaps = 13/180 (7%)
Strand=Plus/Minus
Query 8432 TCAGCCTCCAGAGTAGCTGGGATTACAGGCAAAAGCCACCACG--CCAAGCTAATTTTTG 8489
||||||||| |||||||| ||| |||||||| |||||||| || |||| | |||
Sbjct 2284756 TCAGCCTCCTGAGTAGCTAGGAGTACAGGCATGAGCCACCAGTGCCCCAGCTCTTCTTTC 2284697
Query 8490 TATTTTTAGTAGAGAGAGGGTTTCACCATGTTGGCCAGGCTGGTCTCGAACTC-CTGACC 8548
||||||| || | ||||| | |||| || ||||||||| || ||||| || |
Sbjct 2284696 TATTTTT----GAAACAGGGTCTTACCAGGTGCCCCAGGCTGGCTTCAAACTCACTATCT 2284641
Query 8549 TCATG--TGATCCACCTGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGCATGAGCCACC 8606
|| || | ||| | |||||| ||| | |||||||||||||||||||| |||||
Sbjct 2284640 TCCTGCCTTGTCCTCATGCCTCCTCCT----ATGTGCTGGGATTACAGGCATGCACCACC 2284585
>seq17
Length=26966924
Score = 93.3 bits (102), Expect = 4e-14
Identities = 95/124 (77%), Gaps = 0/124 (0%)
Strand=Plus/Minus
Query 23531 CTTCATCCCTACTAATCAATTCATTAGAAAATGTTAATCCTGGCATTAATCCTCGTTTTT 23590
||||||| || || || | |||||| ||||| || | ||| ||||| | |||| || |
Sbjct 9451004 CTTCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGTCCAGGCATGAGGCCTCTCTTCT 9450945
Query 23591 TAATCCAAAATATTGCAGCAAATGATCCGGAAAAGAAAATACCCTCAACAGCCGCAAAGG 23650
| | ||| ||||| |||||||| ||||| || ||||||| || || || || |||||||
Sbjct 9450944 TTAGCCAGAATATAGCAGCAAAAGATCCAGAGAAGAAAACTCCTTCTACTGCAGCAAAGG 9450885
Query 23651 CCAC 23654
||||
Sbjct 9450884 CCAC 9450881
>seq14
Length=16645930
Score = 91.5 bits (100), Expect = 2e-13
Identities = 88/112 (79%), Gaps = 1/112 (1%)
Strand=Plus/Minus
Query 8504 AGAGGGTTTCACCATGTTGGCCAGGCTGGTCTCGAACTCCTGACCTCATGTGATCCACCT 8563
|||| |||| || ||| | ||||||||||| ||||||||| |||| ||||||| |||
Sbjct 13866887 AGAGTGTTTTACTCTGTCCTCTAGGCTGGTCTCAAACTCCTGAGCTCAAGTGATCCTCCT 13866828
Query 8564 GCCTCGGCCTCCCAAAGTGCTGGGATTACAGGCATGAGCCACCGCGCCTGGC 8615
| || |||| | ||||||||||||||||||||| || | | |||||||
Sbjct 13866827 ACTTCAGCCTTTC-TAGTGCTGGGATTACAGGCATGCACCGCTGTGCCTGGC 13866777
>seq79
Length=7578575
Score = 86.0 bits (94), Expect = 7e-12
Identities = 93/120 (78%), Gaps = 4/120 (3%)
Strand=Plus/Plus
Query 8484 TTTTTGTATTTTTAGTAGAGAGAGG--GTTTCACCATGTTGGCCAGGCTGGTCTCGAA-C 8540
||||| |||||||| | |||| | || |||| ||||| |||| ||||||| || |
Sbjct 3238371 TTTTTTTATTTTTATTTTTGAGATGAGGTCTCACTGTGTTGCCCAGAGTGGTCTCCAAAC 3238430
Query 8541 TCCTGACCTCATGTGATCCACCTGCCTCGGCCTCCCAAAGT-GCTGGGATTACAGGCATG 8599
|| || |||| || || | |||||||| |||||| |||| ||||||||||||||||||
Sbjct 3238431 TCATGGGCTCAAGTAATTCTCCTGCCTCAGCCTCCTTAAGTAGCTGGGATTACAGGCATG 3238490
>seq2
Length=36660411
Score = 86.0 bits (94), Expect = 7e-12
Identities = 87/112 (78%), Gaps = 1/112 (1%)
Strand=Plus/Minus
Query 8484 TTTTTGTATTTTTAGTAGAGAGAGGGTTTCACCATGTTGGCCAGGCTGGTCTCGAACTCC 8543
||||| || |||| ||||| | | ||| || |||||| ||||||||||||| ||||||
Sbjct 26905709 TTTTTTTAATTTTTCAAGAGAAAAGCTTTTACTATGTTGTCCAGGCTGGTCTCAAACTCC 26905650
Query 8544 TGACCTCATGTGATCCACCTGCCTCGGCCTCCCAAAGTGCTGGGATTACAGG 8595
|| ||| || |||| |||| ||| |||| ||| || |||||| ||||||
Sbjct 26905649 TGGGTTCAAGTAATCCTCCTGTCTCAGCCT-CCAGAGCTCTGGGAGTACAGG 26905599
>seq47
Length=11806339
Score = 84.2 bits (92), Expect = 2e-11
Identities = 60/68 (88%), Gaps = 1/68 (1%)
Strand=Plus/Plus
Query 8431 CTCAGCCTCCAGAGTAGCTGGGATTACAGGCAAAAGCCACCA-CGCCAAGCTAATTTTTG 8489
|||||||||| |||||||| ||||||||||| |||||||| |||| |||||||||||
Sbjct 7640808 CTCAGCCTCCTGAGTAGCTAGGATTACAGGCGTGAGCCACCAGCGCCCAGCTAATTTTTA 7640867
Query 8490 TATTTTTA 8497
||||||||
Sbjct 7640868 TATTTTTA 7640875
>seq33
Length=11931245
Score = 82.4 bits (90), Expect = 8e-11
Identities = 65/77 (84%), Gaps = 1/77 (1%)
Strand=Plus/Plus
Query 8431 CTCAGCCTCCAGAGTAGCTGGGATTACAGGCAAAAGCCACCA-CGCCAAGCTAATTTTTG 8489
|||| ||||| |||||||| ||||||||||| |||||||| |||| |||| |||||||
Sbjct 1091237 CTCAACCTCCTGAGTAGCTAGGATTACAGGCGTGAGCCACCAGCGCCCAGCTCATTTTTG 1091296
Query 8490 TATTTTTAGTAGAGAGA 8506
||||||| ||| ||||
Sbjct 1091297 GATTTTTATTAGGGAGA 1091313
>seq11
Length=20748735
Score = 82.4 bits (90), Expect = 8e-11
Identities = 59/67 (88%), Gaps = 1/67 (1%)
Strand=Plus/Plus
Query 8431 CTCAGCCTCCAGAGTAGCTGGGATTACAGGCAAAAGCCACCA-CGCCAAGCTAATTTTTG 8489
|||||||||| |||||||| ||||||||||||| |||||||| |||| ||||| | |||
Sbjct 8165011 CTCAGCCTCCTGAGTAGCTAGGATTACAGGCAAGAGCCACCAGCGCCCAGCTAGTAATTG 8165070
Query 8490 TATTTTT 8496
|||||||
Sbjct 8165071 TATTTTT 8165077
>seq7
Length=23769867
Score = 82.4 bits (90), Expect = 8e-11
Identities = 97/132 (73%), Gaps = 11/132 (8%)
Strand=Plus/Minus
Query 8484 TTTTTGTATTTTTAGTAGAGAGAGGGTTTCACCATGTTGGCCAGGCTGGTCTCGAACTCC 8543
||||| | ||||| | |||| ||||| | ||||| | ||||||||| ||| |||||
Sbjct 21758548 TTTTTTTTTTTTTTTTTGAGACAGGGTCTTGGCATGTAGCCCAGGCTGGCCTCAAACTC- 21758490
Query 8544 TGACCTCATGTGATCCACCTGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGCATGAGCC 8603
| |||| ||||| ||| |||||||| | |||||||||||||||||| ||
Sbjct 21758489 ---------GGGATCTACCTGTCTCAGCCTCCCACA-TGCTGGGATTACAGGCATTCACC 21758440
Query 8604 ACCGCGCCTGGC 8615
||| |||||||
Sbjct 21758439 ACCATGCCTGGC 21758428
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 521063032910200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |