Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dipodomys_20ordii_20[refseq_20GCF_5F000151885.1_202014-12-12] 65,193 sequences; 2,236,368,823 total letters Query= NC_032111.1 Length=163005 Score E Sequences producing significant alignments: (Bits) Value seq31 104 2e-17 seq117 98.7 1e-15 seq35 98.7 1e-15 seq26 98.7 1e-15 seq1 96.9 4e-15 seq143 93.3 4e-14 seq120 93.3 4e-14 seq17 93.3 4e-14 seq14 91.5 2e-13 seq79 86.0 7e-12 seq2 86.0 7e-12 seq47 84.2 2e-11 seq33 82.4 8e-11 seq11 82.4 8e-11 seq7 82.4 8e-11 >seq31 Length=11629466 Score = 104 bits (114), Expect = 2e-17 Identities = 142/194 (73%), Gaps = 11/194 (6%) Strand=Plus/Minus Query 8431 CTCAGCCTCCAGAGTAGCTGGGATTACAGGCAAAAGCCAC---CAC---GCCAAGCTAAT 8484 |||||| ||| |||||||| |||||||||||| |||||| || ||||| | Sbjct 7576348 CTCAGCTTCCTGAGTAGCTAGGATTACAGGCATGAGCCACTGGTACTTGGCCAAAACTTT 7576289 Query 8485 TTTTGTATTTTTAGTAGA--GAGAGGGTTTCACCATGTTG-GCCAGGCTGGTCTCGAACT 8541 |||| | ||||| || | |||| ||| |||| |||||| ||||||||||||| || | Sbjct 7576288 TTTTTTTTTTTTTTTACATGGAGATGGTCTCACTATGTTGTTCCAGGCTGGTCTCAAATT 7576229 Query 8542 CCTGACCTCATGTGATCCACCTGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGCATGAG 8601 |||| |||| ||||| |||| || |||| ||| |||||||||||| | || || Sbjct 7576228 CCTGGGCTCAAGTGAT--ACCTATCTTAGCCTTTCAAGGTGCTGGGATTATATGCTTGTC 7576171 Query 8602 CCACCGCGCCTGGC 8615 ||| | | | |||| Sbjct 7576170 CCATCACACTTGGC 7576157 >seq117 Length=5353375 Score = 98.7 bits (108), Expect = 1e-15 Identities = 137/186 (74%), Gaps = 17/186 (9%) Strand=Plus/Plus Query 8431 CTCAGCCTCCAGAGTAGCTGGGATTACAGGCAAAAGCCACCA-CGCCAAGCTAATTTTTG 8489 |||||||||| |||||||| |||||||||||| |||| |||| ||| |||| | ||||| Sbjct 1824684 CTCAGCCTCCTGAGTAGCTAGGATTACAGGCATAAGCTACCAGTGCCCAGCTTA-TTTTG 1824742 Query 8490 TATTTTTAGTAGAGAGAGGGTTTCAC-CATGTTGGCCAGGCTGGTCTCGAACTCCTGACC 8548 | ||| |||| |||| |||| | ||| ||||| ||| || ||||| | Sbjct 1824743 TTTTT------GAGACAGGGCCTCACTAACTTTGTCCAGGTTGGCCTTGAACT------C 1824790 Query 8549 TCATGTGATCCACCTGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGCATGAGCCACCGC 8608 || || ||||| ||||||| |||||| | | |||||||| ||||||| ||||| | Sbjct 1824791 TC-TG-GATCCTTCTGCCTCCACCTCCCCAGTAGTTGGGATTATAGGCATGTACCACCAC 1824848 Query 8609 GCCTGG 8614 ||||| Sbjct 1824849 ACCTGG 1824854 >seq35 Length=13989929 Score = 98.7 bits (108), Expect = 1e-15 Identities = 138/192 (72%), Gaps = 14/192 (7%) Strand=Plus/Minus Query 8431 CTCAGCCTCCAGAGTAGCTGGGATTACAGGCAAAAGCCACCAC-GCCAAGCTAATTTTTG 8489 |||||||||| |||||||| |||||| ||| | || ||||| ||| || | ||| Sbjct 9369829 CTCAGCCTCCTGAGTAGCTAGGATTAGAGGTATGAGTCACCAGTGCCCAGATTTGCTTTT 9369770 Query 8490 TATTTTTAGTAGAGAGAGGGTTTCACCATGTTGGCCAGGCTGGTCTCGAACTCCTGACCT 8549 | ||||| | ||| ||||| || | | | | |||||||| ||| ||||| | Sbjct 9369769 TTTTTTTTTTTAAGATAGGGTCTCTCTACATAGCCCAGGCTG-------ACTTCTGACTT 9369717 Query 8550 CATGTGATCCACCTGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGCATGAGCCACCGCG 8609 ||||| |||||||| || |||||| |||||||||||||||||| | || ||| | Sbjct 9369716 -----GATCCTCCTGCCTCAGCTTCCCAA-GTGCTGGGATTACAGGCACGTGCTACCACA 9369663 Query 8610 CCTGGCCCTTTA 8621 |||||| | ||| Sbjct 9369662 CCTGGCTCATTA 9369651 Score = 82.4 bits (90), Expect = 8e-11 Identities = 78/100 (78%), Gaps = 0/100 (0%) Strand=Plus/Minus Query 8507 GGGTTTCACCATGTTGGCCAGGCTGGTCTCGAACTCCTGACCTCATGTGATCCACCTGCC 8566 |||| || | |||||| |||||||||||||||| || || |||| || |||| |||||| Sbjct 9519404 GGGTATCGCTATGTTGCCCAGGCTGGTCTCGAATTCATGGGCTCAAGTAATCCTCCTGCC 9519345 Query 8567 TCGGCCTCCCAAAGTGCTGGGATTACAGGCATGAGCCACC 8606 | || |||||| ||||||| || || |||| | |||| Sbjct 9519344 TATGCTTCCCAAGCAGCTGGGACTATAGACATGTGTCACC 9519305 >seq26 Length=16019130 Score = 98.7 bits (108), Expect = 1e-15 Identities = 125/168 (74%), Gaps = 7/168 (4%) Strand=Plus/Minus Query 8431 CTCAGCCTCCAGAGTAGCTGGGATTACAGGCAAAAGCCACCA-CGCCAAGCTAATTTTTG 8489 |||||||||| |||||||| ||||||||||| |||||||| |||| || ||||| Sbjct 12075708 CTCAGCCTCCTGAGTAGCTAGGATTACAGGCGTGAGCCACCAGCGCCCGGC--CTTTTTT 12075651 Query 8490 TATTTTTAGTAGAGAGAGGGTTTCACCATGTTGGCCAGGCTGGTCTCGAACTCCTGACCT 8549 | ||||| || | | || | | |||||| ||||||| |||| |||||||| || Sbjct 12075650 TTTTTTTTTTA---AATGAGTCTTATTATGTTGCCCAGGCTACTCTCCAACTCCTGCACT 12075594 Query 8550 CATGTGATCCACCTGCCTCGGCCTCCCAAAG-TGCTGGGATTACAGGC 8596 || |||||| || |||| ||| || ||| ||| ||||||||||| Sbjct 12075593 CAATTGATCCTCCCACCTCAGCCCCCTTAAGAAGCTAGGATTACAGGC 12075546 >seq1 Length=68039765 Score = 96.9 bits (106), Expect = 4e-15 Identities = 135/184 (73%), Gaps = 8/184 (4%) Strand=Plus/Minus Query 8431 CTCAGCCTCCAGAGTAGCTGGGATTACAGGCAAAAGCCACCA-CGCCAAGCTAATTTTTG 8489 ||||||||| |||||||| ||||||||||| |||||||| |||| ||| | ||| Sbjct 65369412 CTCAGCCTCTTGAGTAGCTAGGATTACAGGCGTGAGCCACCAGCGCCTGGCT--TCTTTC 65369355 Query 8490 TATTTTTAGTAGAGAGAGGGTTTCACCATGTTGGCCAGGCTGGTCTCGAACTCCTGACCT 8549 | ||| | || ||| || | ||||| | |||||||||| | |||||||| || Sbjct 65369354 CTTCTTTCTTTCTGATGGGGACTCGCTATGTTCCCTAGGCTGGTCTAG-ACTCCTGAGCT 65369296 Query 8550 CATGTGATCCACCTGCCTCGGCCTCCCAAAGTGCTGGGATTACAGG--CATGAGCCACCG 8607 || ||| ||| ||||| || | |||| || ||||||| |||||| ||||| ||||| Sbjct 65369295 CAAGTGCTCCTCCTGCTTCAGTCTCCAGAATAGCTGGGACTACAGGTACATGA--CACCG 65369238 Query 8608 CGCC 8611 ||| Sbjct 65369237 TGCC 65369234 >seq143 Length=3461121 Score = 93.3 bits (102), Expect = 4e-14 Identities = 129/177 (73%), Gaps = 18/177 (10%) Strand=Plus/Minus Query 8431 CTCAGCCTCCAGAGTAGCTGGGATTACAGGCAAAAGCCACCA-CGCCAAGCTAATTTTTG 8489 |||||||||| |||||||| ||||||||||| ||||||| |||| ||| || | | Sbjct 1478406 CTCAGCCTCCTGAGTAGCTAGGATTACAGGCGTGAGCCACCGGCGCCT-GCTTATATA-G 1478349 Query 8490 TATTTTTAGTAGAGAGAGGGTTTCACCATGTTGG-CCAGGCTGGTCTCGAACTCCTGACC 8548 | ||||| |||||||||| | | || | ||||||||| ||| ||||| || Sbjct 1478348 TGTTTTT----GAGAGAGGGTCTAGGTAACTTTGTCCAGGCTGGCCTCAAACTCTAGA-- 1478295 Query 8549 TCATGTGATCCACCTGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGCATGAGCCAC 8605 |||||||||||| || | | || || ||||||||||||||||| ||||| Sbjct 1478294 --------TCCACCTGCCTCTGCTTTCTAAGGTACTGGGATTACAGGCATGTGCCAC 1478246 >seq120 Length=4345326 Score = 93.3 bits (102), Expect = 4e-14 Identities = 131/180 (73%), Gaps = 13/180 (7%) Strand=Plus/Minus Query 8432 TCAGCCTCCAGAGTAGCTGGGATTACAGGCAAAAGCCACCACG--CCAAGCTAATTTTTG 8489 ||||||||| |||||||| ||| |||||||| |||||||| || |||| | ||| Sbjct 2284756 TCAGCCTCCTGAGTAGCTAGGAGTACAGGCATGAGCCACCAGTGCCCCAGCTCTTCTTTC 2284697 Query 8490 TATTTTTAGTAGAGAGAGGGTTTCACCATGTTGGCCAGGCTGGTCTCGAACTC-CTGACC 8548 ||||||| || | ||||| | |||| || ||||||||| || ||||| || | Sbjct 2284696 TATTTTT----GAAACAGGGTCTTACCAGGTGCCCCAGGCTGGCTTCAAACTCACTATCT 2284641 Query 8549 TCATG--TGATCCACCTGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGCATGAGCCACC 8606 || || | ||| | |||||| ||| | |||||||||||||||||||| ||||| Sbjct 2284640 TCCTGCCTTGTCCTCATGCCTCCTCCT----ATGTGCTGGGATTACAGGCATGCACCACC 2284585 >seq17 Length=26966924 Score = 93.3 bits (102), Expect = 4e-14 Identities = 95/124 (77%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 23531 CTTCATCCCTACTAATCAATTCATTAGAAAATGTTAATCCTGGCATTAATCCTCGTTTTT 23590 ||||||| || || || | |||||| ||||| || | ||| ||||| | |||| || | Sbjct 9451004 CTTCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGTCCAGGCATGAGGCCTCTCTTCT 9450945 Query 23591 TAATCCAAAATATTGCAGCAAATGATCCGGAAAAGAAAATACCCTCAACAGCCGCAAAGG 23650 | | ||| ||||| |||||||| ||||| || ||||||| || || || || ||||||| Sbjct 9450944 TTAGCCAGAATATAGCAGCAAAAGATCCAGAGAAGAAAACTCCTTCTACTGCAGCAAAGG 9450885 Query 23651 CCAC 23654 |||| Sbjct 9450884 CCAC 9450881 >seq14 Length=16645930 Score = 91.5 bits (100), Expect = 2e-13 Identities = 88/112 (79%), Gaps = 1/112 (1%) Strand=Plus/Minus Query 8504 AGAGGGTTTCACCATGTTGGCCAGGCTGGTCTCGAACTCCTGACCTCATGTGATCCACCT 8563 |||| |||| || ||| | ||||||||||| ||||||||| |||| ||||||| ||| Sbjct 13866887 AGAGTGTTTTACTCTGTCCTCTAGGCTGGTCTCAAACTCCTGAGCTCAAGTGATCCTCCT 13866828 Query 8564 GCCTCGGCCTCCCAAAGTGCTGGGATTACAGGCATGAGCCACCGCGCCTGGC 8615 | || |||| | ||||||||||||||||||||| || | | ||||||| Sbjct 13866827 ACTTCAGCCTTTC-TAGTGCTGGGATTACAGGCATGCACCGCTGTGCCTGGC 13866777 >seq79 Length=7578575 Score = 86.0 bits (94), Expect = 7e-12 Identities = 93/120 (78%), Gaps = 4/120 (3%) Strand=Plus/Plus Query 8484 TTTTTGTATTTTTAGTAGAGAGAGG--GTTTCACCATGTTGGCCAGGCTGGTCTCGAA-C 8540 ||||| |||||||| | |||| | || |||| ||||| |||| ||||||| || | Sbjct 3238371 TTTTTTTATTTTTATTTTTGAGATGAGGTCTCACTGTGTTGCCCAGAGTGGTCTCCAAAC 3238430 Query 8541 TCCTGACCTCATGTGATCCACCTGCCTCGGCCTCCCAAAGT-GCTGGGATTACAGGCATG 8599 || || |||| || || | |||||||| |||||| |||| |||||||||||||||||| Sbjct 3238431 TCATGGGCTCAAGTAATTCTCCTGCCTCAGCCTCCTTAAGTAGCTGGGATTACAGGCATG 3238490 >seq2 Length=36660411 Score = 86.0 bits (94), Expect = 7e-12 Identities = 87/112 (78%), Gaps = 1/112 (1%) Strand=Plus/Minus Query 8484 TTTTTGTATTTTTAGTAGAGAGAGGGTTTCACCATGTTGGCCAGGCTGGTCTCGAACTCC 8543 ||||| || |||| ||||| | | ||| || |||||| ||||||||||||| |||||| Sbjct 26905709 TTTTTTTAATTTTTCAAGAGAAAAGCTTTTACTATGTTGTCCAGGCTGGTCTCAAACTCC 26905650 Query 8544 TGACCTCATGTGATCCACCTGCCTCGGCCTCCCAAAGTGCTGGGATTACAGG 8595 || ||| || |||| |||| ||| |||| ||| || |||||| |||||| Sbjct 26905649 TGGGTTCAAGTAATCCTCCTGTCTCAGCCT-CCAGAGCTCTGGGAGTACAGG 26905599 >seq47 Length=11806339 Score = 84.2 bits (92), Expect = 2e-11 Identities = 60/68 (88%), Gaps = 1/68 (1%) Strand=Plus/Plus Query 8431 CTCAGCCTCCAGAGTAGCTGGGATTACAGGCAAAAGCCACCA-CGCCAAGCTAATTTTTG 8489 |||||||||| |||||||| ||||||||||| |||||||| |||| ||||||||||| Sbjct 7640808 CTCAGCCTCCTGAGTAGCTAGGATTACAGGCGTGAGCCACCAGCGCCCAGCTAATTTTTA 7640867 Query 8490 TATTTTTA 8497 |||||||| Sbjct 7640868 TATTTTTA 7640875 >seq33 Length=11931245 Score = 82.4 bits (90), Expect = 8e-11 Identities = 65/77 (84%), Gaps = 1/77 (1%) Strand=Plus/Plus Query 8431 CTCAGCCTCCAGAGTAGCTGGGATTACAGGCAAAAGCCACCA-CGCCAAGCTAATTTTTG 8489 |||| ||||| |||||||| ||||||||||| |||||||| |||| |||| ||||||| Sbjct 1091237 CTCAACCTCCTGAGTAGCTAGGATTACAGGCGTGAGCCACCAGCGCCCAGCTCATTTTTG 1091296 Query 8490 TATTTTTAGTAGAGAGA 8506 ||||||| ||| |||| Sbjct 1091297 GATTTTTATTAGGGAGA 1091313 >seq11 Length=20748735 Score = 82.4 bits (90), Expect = 8e-11 Identities = 59/67 (88%), Gaps = 1/67 (1%) Strand=Plus/Plus Query 8431 CTCAGCCTCCAGAGTAGCTGGGATTACAGGCAAAAGCCACCA-CGCCAAGCTAATTTTTG 8489 |||||||||| |||||||| ||||||||||||| |||||||| |||| ||||| | ||| Sbjct 8165011 CTCAGCCTCCTGAGTAGCTAGGATTACAGGCAAGAGCCACCAGCGCCCAGCTAGTAATTG 8165070 Query 8490 TATTTTT 8496 ||||||| Sbjct 8165071 TATTTTT 8165077 >seq7 Length=23769867 Score = 82.4 bits (90), Expect = 8e-11 Identities = 97/132 (73%), Gaps = 11/132 (8%) Strand=Plus/Minus Query 8484 TTTTTGTATTTTTAGTAGAGAGAGGGTTTCACCATGTTGGCCAGGCTGGTCTCGAACTCC 8543 ||||| | ||||| | |||| ||||| | ||||| | ||||||||| ||| ||||| Sbjct 21758548 TTTTTTTTTTTTTTTTTGAGACAGGGTCTTGGCATGTAGCCCAGGCTGGCCTCAAACTC- 21758490 Query 8544 TGACCTCATGTGATCCACCTGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGCATGAGCC 8603 | |||| ||||| ||| |||||||| | |||||||||||||||||| || Sbjct 21758489 ---------GGGATCTACCTGTCTCAGCCTCCCACA-TGCTGGGATTACAGGCATTCACC 21758440 Query 8604 ACCGCGCCTGGC 8615 ||| ||||||| Sbjct 21758439 ACCATGCCTGGC 21758428 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 521063032910200