Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Dipodomys_20ordii_20[refseq_20GCF_5F000151885.1_202014-12-12]
65,193 sequences; 2,236,368,823 total letters
Query= NC_032255.1
Length=112536
Score E
Sequences producing significant alignments: (Bits) Value
seq66 129 4e-25
seq147 120 2e-22
seq91 107 1e-18
seq36 100 2e-16
seq1 82.4 5e-11
>seq66
Length=5789316
Score = 129 bits (142), Expect = 4e-25
Identities = 167/231 (72%), Gaps = 0/231 (0%)
Strand=Plus/Minus
Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166
||| || |||| || | | ||||||||| || ||| |||||| ||||||||||| ||
Sbjct 2649670 CATGCCACCTCGGAGACGGAGCACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTC 2649611
Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226
| || || | || ||||||||||| || ||||||||||| | ||||||||| |
Sbjct 2649610 AGACAGGGTACGGCCATCTTCCAGCTGCTTGCCTGCAAAGATCAACCTCTGCTGATCAGG 2649551
Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTC 44286
|| | || ||||| ||| ||||| ||| | | | |||||||| || ||
Sbjct 2649550 TGGTATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTC 2649491
Query 44287 CACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337
|||||||| || || ||||| || || ||||||||||| ||||| |||||
Sbjct 2649490 CACCTCCAAGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 2649440
Score = 129 bits (142), Expect = 4e-25
Identities = 155/211 (73%), Gaps = 0/211 (0%)
Strand=Plus/Minus
Query 44128 CACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTC 44187
||||||||| || ||| |||||| ||||||||||| || | || || | || ||
Sbjct 2649877 CACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTACGGCCATCTTC 2649818
Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGT 44247
||||||||| || |||||||||| | |||||| || | || | |||||||| |||
Sbjct 2649817 CAGCTGCTTGCCCGCAAAGATCAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTGTCCTG 2649758
Query 44248 TATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTT 44307
||||| ||| | | | |||||||| || |||||||||| || || |||||
Sbjct 2649757 GATCTTAGCCTTGACATTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTT 2649698
Query 44308 TCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338
|| || ||||||||||||||||| ||||||
Sbjct 2649697 GCCAGTCAGGGTCTTCACGAAGATCTGCATG 2649667
>seq147
Length=2532799
Score = 120 bits (132), Expect = 2e-22
Identities = 165/231 (71%), Gaps = 0/231 (0%)
Strand=Plus/Minus
Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166
||| || |||||||| | || |||||||| || ||| |||||| ||||||||||| ||
Sbjct 2383951 CATACCACCTCTCAGACGCAGGACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTC 2383892
Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226
| || ||| | || ||||||||||| || || ||||||| | |||||| || |
Sbjct 2383891 AGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCGAAGATCAGCCTCTGCTGGTCAGG 2383832
Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTC 44286
||| | || || || ||| ||||| ||||| | | ||||| || || ||
Sbjct 2383831 AGGGATGCCCTCTTTATCCTGGATCTTGGCCTTCACATTCTCAATGGTATCACTGGGCTC 2383772
Query 44287 CACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337
||||| | || || ||||| || || | ||||||||||||||| |||||
Sbjct 2383771 AACCTCTAGAGTGATGGTCTTGCCAGTCAAGGTCTTCACGAAGATCTGCAT 2383721
Score = 120 bits (132), Expect = 2e-22
Identities = 152/209 (73%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188
|||||||| || ||| ||| || ||||||||||| || | || ||| | || |||
Sbjct 2384157 ACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATCTTCC 2384098
Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248
|||||||| || || ||||||| | |||||| || | ||| | || || || |||
Sbjct 2384097 AGCTGCTTGCCTGCGAAGATCAGCCTCTGCTGGTCGGGAGGGATGCCCTCTTTATCCTGG 2384038
Query 44249 ATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTT 44308
||||| ||||| | | ||||| || || |||||||||| ||||| |||||
Sbjct 2384037 ATCTTGGCCTTCACATTCTCAATGGTATCACTGGGCTCCACCTCCAGGGTAATGGTCTTG 2383978
Query 44309 CCCGTGAGGGTCTTCACGAAGATTTGCAT 44337
|| || ||||||||||||||||| |||||
Sbjct 2383977 CCGGTCAGGGTCTTCACGAAGATCTGCAT 2383949
>seq91
Length=4965619
Score = 107 bits (118), Expect = 1e-18
Identities = 159/221 (72%), Gaps = 6/221 (3%)
Strand=Plus/Plus
Query 44120 AGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGA--GTTGGC 44177
|||||||| || || ||||| ||| |||||||||||||||||| || | | ||| |
Sbjct 1585558 AGTCTCAATACTAGATGAAGAGTGGACTCCTTTTGGATGTTGTAGTCAGATAAAGTTTGT 1585617
Query 44178 GCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTT 44237
| || ||||||||||| || |||||||||| | |||||||| | ||| ||||
Sbjct 1585618 CCA--TCTTCCAGCTGCTTACCAGCAAAGATCAGTCTTTGCTGATCAGGTAGCATTCCTT 1585675
Query 44238 CCTTTTCCGTTATCTTCTGCTTCA-ATGTTCCTATGGTGTCGGCGGATTCCACCTCCACC 44296
|||| ||| ||||| ||| | || |||| || || || | || ||| |||| |
Sbjct 1585676 CCTTATCCTGGATCTTGGCCTTTACATTTTCC-ATAGTATCCGAGGGTTCAACCTTGAGT 1585734
Query 44297 GTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337
|| || || || ||||| ||||| || | ||| || |||||
Sbjct 1585735 GTGATGGTTTTCCCCGTAAGGGTTTTAATGAAAATCTGCAT 1585775
>seq36
Length=17049061
Score = 100 bits (110), Expect = 2e-16
Identities = 151/212 (71%), Gaps = 6/212 (3%)
Strand=Plus/Plus
Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGG--CGAGT-TGGCGCTCGTCG 44185
||||| |||| || ||| || ||||||||||| || | |||| |||| | ||
Sbjct 7362827 ACCAGACGAAGGGTAGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGTGGC---CATCT 7362883
Query 44186 TCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCC 44245
|||| |||||| || || ||||||| | |||||| || | ||| | || || || |||
Sbjct 7362884 TCCACCTGCTTGCCTGCGAAGATCAGCCTCTGCTGGTCAGGAGGAATGCCCTCTTTATCC 7362943
Query 44246 GTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTC 44305
||||| ||||| | | | ||||| || || |||||||||| |||| |||
Sbjct 7362944 TGGATCTTGGCCTTCACTTTCTCAATGGTATCAATGGGCTCCACCTCCAGGATAATGGTC 7363003
Query 44306 TTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337
|| || || |||||||||| |||||| |||||
Sbjct 7363004 TTGCCGGTCAGGGTCTTCATGAAGATCTGCAT 7363035
>seq1
Length=68039765
Score = 82.4 bits (90), Expect = 5e-11
Identities = 153/221 (69%), Gaps = 3/221 (1%)
Strand=Plus/Minus
Query 44122 TCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCG-AGTTGGCGCT 44180
||| ||||| || ||||| ||| ||||||||| |||||||| || | || | ||
Sbjct 38753662 TCTTAACACTAGATGAAGAGTGGACTCCTTTTGCATGTTGTAGTCAGATCAGGTA-CGTC 38753604
Query 44181 CGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCT 44240
| | ||||||||||| || ||||||||| | |||||||| | ||| | |||||||
Sbjct 38753603 CATTTTCCAGCTGCTTACCATCAAAGATCAGTCTTTGCTGATCAGGAGGAATTCCTTCCT 38753544
Query 44241 TTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAA 44300
| ||| ||||| ||| | || | | || || || |||| |||| | | |
Sbjct 38753543 TATCCTGAATCTTGACCTTTACATTTTGTGTAGTATCTCAGGGTTCCGCCTCAAGCATGG 38753484
Query 44301 TCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATGATG 44341
||| ||||| | ||||| || || || || |||||||||
Sbjct 38753483 CGGTC-TTCCCCTAAGGGTTTTGACAAAAATCTGCATGATG 38753444
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 359704373340081
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |