Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Dipodomys_20ordii_20[refseq_20GCF_5F000151885.1_202014-12-12]
65,193 sequences; 2,236,368,823 total letters
Query= NC_033176.1
Length=224064
Score E
Sequences producing significant alignments: (Bits) Value
seq57 158 2e-33
seq127 109 8e-19
>seq57
Length=13896254
Score = 158 bits (174), Expect = 2e-33
Identities = 171/227 (75%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 9253 GTGGTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGTTCTTGTTTCAGAACATCGCAC 9312
|| |||||||||| |||| ||| ||| |||||||| |||||||| || ||||| |||
Sbjct 6722690 GTAGTCTGGAACAAGCGCTCATCATCCCACTCTGGATGCTCTTGTTTAAGCACATCACAC 6722631
Query 9313 ACCCTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATCATGAGCCCAGGTACCAGGCCA 9372
|| | ||||||||| | |||||||| ||||| |||||||| || ||||||||||| |||
Sbjct 6722630 ACTCGGTTGTGTTCTCGAAGCCAGATGGTGGCATACATCATCAGACCAGGTACCAGACCA 6722571
Query 9373 AAAGCCTCTTGACCGACAGCCAGACGCATGTTTTCGGGCACTTCGGGAGGATAGATCATG 9432
|| ||| || || ||||| | ||| || || || | || || ||||||||
Sbjct 6722570 AAGATCTCCTGCCCCACAGCAAACTGCAGGTGCTCAGGGGTATGAGGTGGGTAGATCATC 6722511
Query 9433 TGCACCTGGACGTCTTTGACCGAGGGGGGATACATTTCACCGTCAAT 9479
| |||||| |||||||| | |||||||||||| || || || ||
Sbjct 6722510 TCCACCTGAGTATCTTTGACTGTGGGGGGATACATCTCTCCATCTAT 6722464
Score = 138 bits (152), Expect = 2e-27
Identities = 202/286 (71%), Gaps = 0/286 (0%)
Strand=Plus/Minus
Query 8300 AACGGACACCCCTTGACGTTGCTACAGACTAGAGACTGAATAGTTGCGCTCTTGACGATC 8359
|| ||||| ||||||||||| |||||| || ||||| || | || | |||| |||
Sbjct 6724352 AAGGGACAGCCCTTGACGTTATTACAGATGAGGGACTGGATGGAGGCAGTGTTGATGATT 6724293
Query 8360 CCGAACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGGAGCAGATGACG 8419
|| || || ||||| || || ||||| || ||||||||| || ||||||||
Sbjct 6724292 TTAAAACCTACTTCTCCACCAAAAGTGCTCGGTTTCCAGTACTGAGGTGAGCAGATAGGA 6724233
Query 8420 TTCGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGCTCTCACCGAAG 8479
|| |||| || ||||| | |||||| || || || | || | ||| | || || ||
Sbjct 6724232 TTACCCATAAGTCCTTTCAAGGAGAATGGTGCTCCAAGTTCTACCATGGTTTCCCCAAAT 6724173
Query 8480 ATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAGCTCCACAGCCTCGACG 8539
|| || | ||||| |||||||| |||| | | | ||||| ||||| ||| || | |
Sbjct 6724172 ATAGCATCTGGACGAGGCTTTTCTACCAGCAGGGCAGGGTACAACTCCATAGCGTCAATG 6724113
Query 8540 TCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATCTCCTTTTCTCCTG 8585
|| || || ||||| | ||||||||| || ||||| |||||||
Sbjct 6724112 TCACCATACAGGGCTTCCAATTCGGCAGCCATTTCCTTCTCTCCTG 6724067
Score = 100 bits (110), Expect = 4e-16
Identities = 117/158 (74%), Gaps = 0/158 (0%)
Strand=Plus/Minus
Query 9649 TCTTACCCCATGTCCCAGTCCTTTAGTGAAGGCCGGGCCTCGCGCCAAATCAGTCCTAAA 9708
|||||||||||| ||||||||||| || || || || ||||| ||| ||| | ||
Sbjct 6721497 TCTTACCCCATGGCCCAGTCCTTTGGTAAAAGCAGGTCCTCGTTTTTGATCTGTCTTGAA 6721438
Query 9709 AAACTGGTGCGTGAAATGTTGGCCAAAAAAGGCAAACATTAAGTTGGTGCCCTGGGGATC 9768
|||||| || ||||| |||||| |||| || || ||||| | ||| ||||| || |||||
Sbjct 6721437 AAACTGATGGGTGAAGTGTTGGGCAAAGAATGCGAACATCATGTTAGTGCCTTGAGGATC 6721378
Query 9769 GGGAGTGAAGGTCCTCCGAAGAAGAGTTTTTTCCACAA 9806
|| | || | || | |||||| ||| |||| ||
Sbjct 6721377 AGGGATAAACTTTCTTCTCAGAAGAACTTTCTCCAGAA 6721340
Score = 98.7 bits (108), Expect = 1e-15
Identities = 184/266 (69%), Gaps = 6/266 (2%)
Strand=Plus/Minus
Query 8944 CTTACTCGGCCGGCTATTTGTTTCGTGAACGATTCTACTAGCTGGGTAATGCCGTGAGTC 9003
||||| ||||| || |||| || ||||| ||||| || | ||| |||| ||| ||
Sbjct 6723291 CTTACCCGGCCAGCATTTTGCTTGGTGAAGGATTCAACAAACTGAGTAAGGCCATGCTCT 6723232
Query 9004 ATGAGTATGGAATTGTTGTAGACGAA--GTTAACGTAGTCATACTTTGTTTTATCAATCT 9061
|| ||||||||||||||||||| || ||| | | | |||| | |||||| |
Sbjct 6723231 ATTAGTATGGAATTGTTGTAGAGAAACTGTTTA--AAATTGTACTCCTGGTCATCAATTT 6723174
Query 9062 CAAATGCATCCGGCATGAGAGAATGCCAGTGATACAACATGTTAAACTCGGAAAATATAC 9121
||| | || |||| |||| ||||||||| || | ||||||| || | | ||||
Sbjct 6723173 GAAAGGTGTCAGGCAGCAGAGGATGCCAGTGGTAGAGGGTGTTAAATTCAGCAGCGATAC 6723114
Query 9122 GATTTTGGTACTGGAA-CGAAGTACCAAAGAGCAGTTCGGGCTTAAACAGCAGCTGAAAA 9180
| |||||||| ||||| | | ||| |||||||| || | |||| || | ||
Sbjct 6723113 GGTTTTGGTATTGGAATTGTTGGTTGAAA-AGCAGTTCTGGGTCAAACTTCAATTTGAAG 6723055
Query 9181 TGGTAGCCGCTGAGCTGCTGAACGTA 9206
|| ||||| || || ||||| || ||
Sbjct 6723054 TGATAGCCACTCAGGTGCTGTACATA 6723029
Score = 91.5 bits (100), Expect = 2e-13
Identities = 110/150 (73%), Gaps = 0/150 (0%)
Strand=Plus/Minus
Query 9910 ACCTTTGACCCCAACAGGAGTTGGACAATCGTGAGGAACCGGAGGTAGAATCCTTGCGTA 9969
|||||| || || | |||||||| || || | || || ||||| || || | ||
Sbjct 6720994 ACCTTTCACACCCATGGGAGTTGGGCAGTCATCAGCTACAGGAGGAAGGGCTCTGGTATA 6720935
Query 9970 ATAGGAGAGATTGGAGAAAGCTTCCCAGCTTGGGTATTCGTAGTCCGCGTTGTATATGGG 10029
|||||||| || ||||| |||||||||||| ||| | || ||| | ||||| | ||
Sbjct 6720934 GTAGGAGAGGTTAGAGAAGGCTTCCCAGCTTTTGTAGCCATAATCCACATTGTAAGTTGG 6720875
Query 10030 AGGGCTGTCAATCAAATCGGATCTACCTGA 10059
|||||||||||||||| ||||| ||||
Sbjct 6720874 TGGGCTGTCAATCAAATGTGATCTGGCTGA 6720845
>seq127
Length=8276331
Score = 109 bits (120), Expect = 8e-19
Identities = 165/235 (70%), Gaps = 0/235 (0%)
Strand=Plus/Plus
Query 8351 TTGACGATCCCGAACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGGAG 8410
||||||| ||| ||||| || || || || ||||| |||||||||||| | || ||
Sbjct 253149 TTGACGAGGTTGAAGCCCACCTCACCACCAAATGTGCTTGGCTTCCAGTACTCTGGAGAA 253208
Query 8411 CAGATGACGTTCGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGCTC 8470
|||||| |||| | | || || |||||||| || ||||| || | ||| | || |||
Sbjct 253209 CAGATGGGGTTCCCTAAAAGACCCTTGAGGGAAAAAGGAGCTCCGATCTCTATCATACTC 253268
Query 8471 TCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAGCTCCACA 8530
|| || ||||||| |||||| | |||||| | | | |||| ||| | ||||
Sbjct 253269 TCCCCAAAGATGGAGTTGGGCTGACACTTTTCAAGAAGCAGCCCGGGGTAGAATTCCAAG 253328
Query 8531 GCCTCGACGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATCTCCTTTTCTCCTG 8585
|| || | ||||||||| | | | || ||||| ||||||| |||||||
Sbjct 253329 GCATCAATGTCTCCGTATAACTCTTCCAACTCAGCAGCCATCTCCTCCTCTCCTG 253383
Score = 87.8 bits (96), Expect = 3e-12
Identities = 110/149 (74%), Gaps = 4/149 (3%)
Strand=Plus/Plus
Query 9647 GTTCTTACCCCATGTCCCAGTCCTTTAGTGAAGGCCGGGCC--TCGCGCCAAATCAGTCC 9704
|| || |||||||| |||| | || |||||| | || || || |||| || ||
Sbjct 262590 GTGCTCACCCCATGGCCCAAGGCCTTGGTGAAGCCAGGACCCATCTTGCCAGAT--GTTT 262647
Query 9705 TAAAAAACTGGTGCGTGAAATGTTGGCCAAAAAAGGCAAACATTAAGTTGGTGCCCTGGG 9764
| || ||||| |||||||| ||||| | || ||||||||||| | ||||||||| ||||
Sbjct 262648 TGAAGAACTGATGCGTGAAGTGTTGTGCGAAGAAGGCAAACATGAGGTTGGTGCCTTGGG 262707
Query 9765 GATCGGGAGTGAAGGTCCTCCGAAGAAGA 9793
||||||| |||| | |||| || |||
Sbjct 262708 GATCGGGGATGAACTTTCTCCTGAGCAGA 262736
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 716292608134720
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |