Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dipodomys_20ordii_20[refseq_20GCF_5F000151885.1_202014-12-12] 65,193 sequences; 2,236,368,823 total letters Query= NC_033176.1 Length=224064 Score E Sequences producing significant alignments: (Bits) Value seq57 158 2e-33 seq127 109 8e-19 >seq57 Length=13896254 Score = 158 bits (174), Expect = 2e-33 Identities = 171/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 9253 GTGGTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGTTCTTGTTTCAGAACATCGCAC 9312 || |||||||||| |||| ||| ||| |||||||| |||||||| || ||||| ||| Sbjct 6722690 GTAGTCTGGAACAAGCGCTCATCATCCCACTCTGGATGCTCTTGTTTAAGCACATCACAC 6722631 Query 9313 ACCCTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATCATGAGCCCAGGTACCAGGCCA 9372 || | ||||||||| | |||||||| ||||| |||||||| || ||||||||||| ||| Sbjct 6722630 ACTCGGTTGTGTTCTCGAAGCCAGATGGTGGCATACATCATCAGACCAGGTACCAGACCA 6722571 Query 9373 AAAGCCTCTTGACCGACAGCCAGACGCATGTTTTCGGGCACTTCGGGAGGATAGATCATG 9432 || ||| || || ||||| | ||| || || || | || || |||||||| Sbjct 6722570 AAGATCTCCTGCCCCACAGCAAACTGCAGGTGCTCAGGGGTATGAGGTGGGTAGATCATC 6722511 Query 9433 TGCACCTGGACGTCTTTGACCGAGGGGGGATACATTTCACCGTCAAT 9479 | |||||| |||||||| | |||||||||||| || || || || Sbjct 6722510 TCCACCTGAGTATCTTTGACTGTGGGGGGATACATCTCTCCATCTAT 6722464 Score = 138 bits (152), Expect = 2e-27 Identities = 202/286 (71%), Gaps = 0/286 (0%) Strand=Plus/Minus Query 8300 AACGGACACCCCTTGACGTTGCTACAGACTAGAGACTGAATAGTTGCGCTCTTGACGATC 8359 || ||||| ||||||||||| |||||| || ||||| || | || | |||| ||| Sbjct 6724352 AAGGGACAGCCCTTGACGTTATTACAGATGAGGGACTGGATGGAGGCAGTGTTGATGATT 6724293 Query 8360 CCGAACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGGAGCAGATGACG 8419 || || || ||||| || || ||||| || ||||||||| || |||||||| Sbjct 6724292 TTAAAACCTACTTCTCCACCAAAAGTGCTCGGTTTCCAGTACTGAGGTGAGCAGATAGGA 6724233 Query 8420 TTCGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGCTCTCACCGAAG 8479 || |||| || ||||| | |||||| || || || | || | ||| | || || || Sbjct 6724232 TTACCCATAAGTCCTTTCAAGGAGAATGGTGCTCCAAGTTCTACCATGGTTTCCCCAAAT 6724173 Query 8480 ATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAGCTCCACAGCCTCGACG 8539 || || | ||||| |||||||| |||| | | | ||||| ||||| ||| || | | Sbjct 6724172 ATAGCATCTGGACGAGGCTTTTCTACCAGCAGGGCAGGGTACAACTCCATAGCGTCAATG 6724113 Query 8540 TCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATCTCCTTTTCTCCTG 8585 || || || ||||| | ||||||||| || ||||| ||||||| Sbjct 6724112 TCACCATACAGGGCTTCCAATTCGGCAGCCATTTCCTTCTCTCCTG 6724067 Score = 100 bits (110), Expect = 4e-16 Identities = 117/158 (74%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 9649 TCTTACCCCATGTCCCAGTCCTTTAGTGAAGGCCGGGCCTCGCGCCAAATCAGTCCTAAA 9708 |||||||||||| ||||||||||| || || || || ||||| ||| ||| | || Sbjct 6721497 TCTTACCCCATGGCCCAGTCCTTTGGTAAAAGCAGGTCCTCGTTTTTGATCTGTCTTGAA 6721438 Query 9709 AAACTGGTGCGTGAAATGTTGGCCAAAAAAGGCAAACATTAAGTTGGTGCCCTGGGGATC 9768 |||||| || ||||| |||||| |||| || || ||||| | ||| ||||| || ||||| Sbjct 6721437 AAACTGATGGGTGAAGTGTTGGGCAAAGAATGCGAACATCATGTTAGTGCCTTGAGGATC 6721378 Query 9769 GGGAGTGAAGGTCCTCCGAAGAAGAGTTTTTTCCACAA 9806 || | || | || | |||||| ||| |||| || Sbjct 6721377 AGGGATAAACTTTCTTCTCAGAAGAACTTTCTCCAGAA 6721340 Score = 98.7 bits (108), Expect = 1e-15 Identities = 184/266 (69%), Gaps = 6/266 (2%) Strand=Plus/Minus Query 8944 CTTACTCGGCCGGCTATTTGTTTCGTGAACGATTCTACTAGCTGGGTAATGCCGTGAGTC 9003 ||||| ||||| || |||| || ||||| ||||| || | ||| |||| ||| || Sbjct 6723291 CTTACCCGGCCAGCATTTTGCTTGGTGAAGGATTCAACAAACTGAGTAAGGCCATGCTCT 6723232 Query 9004 ATGAGTATGGAATTGTTGTAGACGAA--GTTAACGTAGTCATACTTTGTTTTATCAATCT 9061 || ||||||||||||||||||| || ||| | | | |||| | |||||| | Sbjct 6723231 ATTAGTATGGAATTGTTGTAGAGAAACTGTTTA--AAATTGTACTCCTGGTCATCAATTT 6723174 Query 9062 CAAATGCATCCGGCATGAGAGAATGCCAGTGATACAACATGTTAAACTCGGAAAATATAC 9121 ||| | || |||| |||| ||||||||| || | ||||||| || | | |||| Sbjct 6723173 GAAAGGTGTCAGGCAGCAGAGGATGCCAGTGGTAGAGGGTGTTAAATTCAGCAGCGATAC 6723114 Query 9122 GATTTTGGTACTGGAA-CGAAGTACCAAAGAGCAGTTCGGGCTTAAACAGCAGCTGAAAA 9180 | |||||||| ||||| | | ||| |||||||| || | |||| || | || Sbjct 6723113 GGTTTTGGTATTGGAATTGTTGGTTGAAA-AGCAGTTCTGGGTCAAACTTCAATTTGAAG 6723055 Query 9181 TGGTAGCCGCTGAGCTGCTGAACGTA 9206 || ||||| || || ||||| || || Sbjct 6723054 TGATAGCCACTCAGGTGCTGTACATA 6723029 Score = 91.5 bits (100), Expect = 2e-13 Identities = 110/150 (73%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 9910 ACCTTTGACCCCAACAGGAGTTGGACAATCGTGAGGAACCGGAGGTAGAATCCTTGCGTA 9969 |||||| || || | |||||||| || || | || || ||||| || || | || Sbjct 6720994 ACCTTTCACACCCATGGGAGTTGGGCAGTCATCAGCTACAGGAGGAAGGGCTCTGGTATA 6720935 Query 9970 ATAGGAGAGATTGGAGAAAGCTTCCCAGCTTGGGTATTCGTAGTCCGCGTTGTATATGGG 10029 |||||||| || ||||| |||||||||||| ||| | || ||| | ||||| | || Sbjct 6720934 GTAGGAGAGGTTAGAGAAGGCTTCCCAGCTTTTGTAGCCATAATCCACATTGTAAGTTGG 6720875 Query 10030 AGGGCTGTCAATCAAATCGGATCTACCTGA 10059 |||||||||||||||| ||||| |||| Sbjct 6720874 TGGGCTGTCAATCAAATGTGATCTGGCTGA 6720845 >seq127 Length=8276331 Score = 109 bits (120), Expect = 8e-19 Identities = 165/235 (70%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 8351 TTGACGATCCCGAACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGGAG 8410 ||||||| ||| ||||| || || || || ||||| |||||||||||| | || || Sbjct 253149 TTGACGAGGTTGAAGCCCACCTCACCACCAAATGTGCTTGGCTTCCAGTACTCTGGAGAA 253208 Query 8411 CAGATGACGTTCGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGCTC 8470 |||||| |||| | | || || |||||||| || ||||| || | ||| | || ||| Sbjct 253209 CAGATGGGGTTCCCTAAAAGACCCTTGAGGGAAAAAGGAGCTCCGATCTCTATCATACTC 253268 Query 8471 TCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAGCTCCACA 8530 || || ||||||| |||||| | |||||| | | | |||| ||| | |||| Sbjct 253269 TCCCCAAAGATGGAGTTGGGCTGACACTTTTCAAGAAGCAGCCCGGGGTAGAATTCCAAG 253328 Query 8531 GCCTCGACGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATCTCCTTTTCTCCTG 8585 || || | ||||||||| | | | || ||||| ||||||| ||||||| Sbjct 253329 GCATCAATGTCTCCGTATAACTCTTCCAACTCAGCAGCCATCTCCTCCTCTCCTG 253383 Score = 87.8 bits (96), Expect = 3e-12 Identities = 110/149 (74%), Gaps = 4/149 (3%) Strand=Plus/Plus Query 9647 GTTCTTACCCCATGTCCCAGTCCTTTAGTGAAGGCCGGGCC--TCGCGCCAAATCAGTCC 9704 || || |||||||| |||| | || |||||| | || || || |||| || || Sbjct 262590 GTGCTCACCCCATGGCCCAAGGCCTTGGTGAAGCCAGGACCCATCTTGCCAGAT--GTTT 262647 Query 9705 TAAAAAACTGGTGCGTGAAATGTTGGCCAAAAAAGGCAAACATTAAGTTGGTGCCCTGGG 9764 | || ||||| |||||||| ||||| | || ||||||||||| | ||||||||| |||| Sbjct 262648 TGAAGAACTGATGCGTGAAGTGTTGTGCGAAGAAGGCAAACATGAGGTTGGTGCCTTGGG 262707 Query 9765 GATCGGGAGTGAAGGTCCTCCGAAGAAGA 9793 ||||||| |||| | |||| || ||| Sbjct 262708 GATCGGGGATGAACTTTCTCCTGAGCAGA 262736 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 716292608134720