Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dipodomys_20ordii_20[refseq_20GCF_5F000151885.1_202014-12-12] 65,193 sequences; 2,236,368,823 total letters Query= NC_033423.1 Length=208501 Score E Sequences producing significant alignments: (Bits) Value seq165 86.0 8e-12 >seq165 Length=2883133 Score = 86.0 bits (94), Expect = 8e-12 Identities = 117/161 (73%), Gaps = 2/161 (1%) Strand=Plus/Minus Query 156179 GTTAGCTTCCGATTCACCCACATATTTGTTTAATAATTCAGGACCGTTAACTATTTTGAC 156238 |||||| || ||||| |||||||||||||| | | ||| || || || |||| |||| Sbjct 2394083 GTTAGCCTCTGATTCTCCCACATATTTGTTAAGGATTTCTGGCCCATTGACTACTTTGGG 2394024 Query 156239 GGGTCGTG-ATTTAAAAGCTTGAGCGATACAGCGAGCCATTAATGTTTTACCGCACCCAG 156297 || || |||||| | |||| | || ||||||| | |||||||| || || | Sbjct 2394023 CTCTCTTGCATTTAACATCTTGC-CAATCTGCCGAGCCAAGAGAGTTTTACCACAACCTG 2393965 Query 156298 GAGGTCCGTATAACAATACTCCTTTTATATGTTTACAACCT 156338 | ||||| || |||| | ||||| | ||||||||||||| Sbjct 2393964 GGGGTCCATACAACAGGATGCCTTTAACATGTTTACAACCT 2393924 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 666531592081080