Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dipodomys_20ordii_20[refseq_20GCF_5F000151885.1_202014-12-12] 65,193 sequences; 2,236,368,823 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq66 136 1e-26 seq1 93.3 1e-13 >seq66 Length=5789316 Score = 136 bits (150), Expect = 1e-26 Identities = 156/208 (75%), Gaps = 4/208 (2%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || |||||||| || || || || || || |||||||| |||||||| || ||| Sbjct 2649671 CAGATCTTCGTGAAGACCCTGACTGGCAAGACCATCACCCTGGAGGTGGA--GCCCAGTG 2649728 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||||||||| ||||| ||||| |||||||| ||||| || || || ||||||| Sbjct 2649729 ACACCATCGAGAATGTCAAGGCTAAGATCCAGGACAAGGAAGGCATTCCCCCTGACCAGC 2649788 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | || ||||| || || || ||||| |||||||| | || || | || || ||| Sbjct 2649789 AGAGGCTGATCTTTGCGGGCAAGCAGCTGGAAGATGGCCGTACCCTGTCTGACTACAACA 2649848 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGT 178129 |||| || || || || ||||| || || Sbjct 2649849 TCCAGAAGGAGTCCACTCTGCACCTGGT 2649876 Score = 113 bits (124), Expect = 1e-19 Identities = 151/208 (73%), Gaps = 4/208 (2%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || || ||||| || || || || || || |||||| | |||||||| || ||| Sbjct 2649443 CAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCTTGGAGGTGGA--GCCCAGTG 2649500 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||||||||| ||||| ||||| |||||||| || || || || || || |||| Sbjct 2649501 ACACCATCGAGAATGTCAAGGCCAAGATCCAGGACAAGGAGGGCATACCACCTGATCAGC 2649560 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | | ||||| || || || ||||| |||||||| | || || | || || ||| Sbjct 2649561 AGAGGTTGATCTTTGCAGGCAAGCAGCTGGAAGATGGCCGTACCCTGTCTGACTACAACA 2649620 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGT 178129 |||| || || || || ||||| || || Sbjct 2649621 TCCAGAAGGAGTCCACTCTGCACCTGGT 2649648 >seq1 Length=68039765 Score = 93.3 bits (102), Expect = 1e-13 Identities = 149/213 (70%), Gaps = 1/213 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || ||||| || ||||| || | |||| | || || || |||| |||| || ||| Sbjct 38753451 CAGATTTTTGTCAAAACCCTTAGGGGAAGACCGC-CATGCTTGAGGCGGAACCCTGAGAT 38753509 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || | | || || || ||||||||||| || |||||||| ||||| || |||||| Sbjct 38753510 ACTACACAAAATGTAAAGGTCAAGATTCAGGATAAGGAAGGAATTCCTCCTGATCAGCAA 38753569 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 |||| ||||| | || || ||||| ||| ||||| | || | || || ||| | Sbjct 38753570 AGACTGATCTTTGATGGTAAGCAGCTGGAAAATGGACGTACCTGATCTGACTACAACATG 38753629 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGA 178136 ||||| || || || || ||||| || || ||| Sbjct 38753630 CAAAAGGAGTCCACTCTTCATCTAGTGTTAAGA 38753662 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1202725741008442