Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Dipodomys_20ordii_20[refseq_20GCF_5F000151885.1_202014-12-12]
65,193 sequences; 2,236,368,823 total letters
Query= NC_033775.1
Length=376207
Score E
Sequences producing significant alignments: (Bits) Value
seq66 136 1e-26
seq1 93.3 1e-13
>seq66
Length=5789316
Score = 136 bits (150), Expect = 1e-26
Identities = 156/208 (75%), Gaps = 4/208 (2%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981
|| || |||||||| || || || || || || |||||||| |||||||| || |||
Sbjct 2649671 CAGATCTTCGTGAAGACCCTGACTGGCAAGACCATCACCCTGGAGGTGGA--GCCCAGTG 2649728
Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041
||||||||||||| ||||| ||||| |||||||| ||||| || || || |||||||
Sbjct 2649729 ACACCATCGAGAATGTCAAGGCTAAGATCCAGGACAAGGAAGGCATTCCCCCTGACCAGC 2649788
Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101
| | || ||||| || || || ||||| |||||||| | || || | || || |||
Sbjct 2649789 AGAGGCTGATCTTTGCGGGCAAGCAGCTGGAAGATGGCCGTACCCTGTCTGACTACAACA 2649848
Query 178102 TCCAAAAAGAATCAACACTGCATCTTGT 178129
|||| || || || || ||||| || ||
Sbjct 2649849 TCCAGAAGGAGTCCACTCTGCACCTGGT 2649876
Score = 113 bits (124), Expect = 1e-19
Identities = 151/208 (73%), Gaps = 4/208 (2%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981
|| || || ||||| || || || || || || |||||| | |||||||| || |||
Sbjct 2649443 CAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCTTGGAGGTGGA--GCCCAGTG 2649500
Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041
||||||||||||| ||||| ||||| |||||||| || || || || || || ||||
Sbjct 2649501 ACACCATCGAGAATGTCAAGGCCAAGATCCAGGACAAGGAGGGCATACCACCTGATCAGC 2649560
Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101
| | | ||||| || || || ||||| |||||||| | || || | || || |||
Sbjct 2649561 AGAGGTTGATCTTTGCAGGCAAGCAGCTGGAAGATGGCCGTACCCTGTCTGACTACAACA 2649620
Query 178102 TCCAAAAAGAATCAACACTGCATCTTGT 178129
|||| || || || || ||||| || ||
Sbjct 2649621 TCCAGAAGGAGTCCACTCTGCACCTGGT 2649648
>seq1
Length=68039765
Score = 93.3 bits (102), Expect = 1e-13
Identities = 149/213 (70%), Gaps = 1/213 (0%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| ||||| || ||||| || | |||| | || || || |||| |||| || |||
Sbjct 38753451 CAGATTTTTGTCAAAACCCTTAGGGGAAGACCGC-CATGCTTGAGGCGGAACCCTGAGAT 38753509
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|| | | || || || ||||||||||| || |||||||| ||||| || ||||||
Sbjct 38753510 ACTACACAAAATGTAAAGGTCAAGATTCAGGATAAGGAAGGAATTCCTCCTGATCAGCAA 38753569
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
|||| ||||| | || || ||||| ||| ||||| | || | || || ||| |
Sbjct 38753570 AGACTGATCTTTGATGGTAAGCAGCTGGAAAATGGACGTACCTGATCTGACTACAACATG 38753629
Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGA 178136
||||| || || || || ||||| || || |||
Sbjct 38753630 CAAAAGGAGTCCACTCTTCATCTAGTGTTAAGA 38753662
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1202725741008442
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |