Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Dipodomys_20ordii_20[refseq_20GCF_5F000151885.1_202014-12-12]
65,193 sequences; 2,236,368,823 total letters
Query= NC_033780.1
Length=144510
Score E
Sequences producing significant alignments: (Bits) Value
seq66 140 3e-28
seq147 123 2e-23
seq36 100 3e-16
>seq66
Length=5789316
Score = 140 bits (154), Expect = 3e-28
Identities = 161/217 (74%), Gaps = 0/217 (0%)
Strand=Plus/Minus
Query 41647 ACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTC 41706
||| | |||||| ||||| ||| ||||||||| ||||| ||||| || ||||| || |
Sbjct 2649883 ACGGAGCACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTACGGCC 2649824
Query 41707 GTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTT 41766
|| || ||||||||||| || || ||||| | ||| ||||| | ||||| || |||||
Sbjct 2649823 ATCTTCCAGCTGCTTGCCCGCAAAGATCAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTT 2649764
Query 41767 GTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTTAT 41826
|||| ||| || ||| | | | ||||| || | ||||||||||| || ||
Sbjct 2649763 GTCCTGGATCTTAGCCTTGACATTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGAT 2649704
Query 41827 CGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863
|| || || ||||| ||||| ||||| |||||||||
Sbjct 2649703 GGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCATG 2649667
Score = 127 bits (140), Expect = 2e-24
Identities = 165/228 (72%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694
||| || || ||||| | |||||| ||||| ||| ||||||||| ||||| ||||| ||
Sbjct 2649667 GCCACCTCGGAGACGGAGCACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGA 2649608
Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754
||||| || | || || ||||||||||| || || |||| | ||| || || | ||
Sbjct 2649607 CAGGGTACGGCCATCTTCCAGCTGCTTGCCTGCAAAGATCAACCTCTGCTGATCAGGTGG 2649548
Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCAC 41814
| || |||||||||| ||| || ||| | | | ||||| || | ||||||
Sbjct 2649547 TATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCCAC 2649488
Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862
||||| || || || || || ||||| ||||| || || ||||||||
Sbjct 2649487 CTCCAAGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 2649440
>seq147
Length=2532799
Score = 123 bits (136), Expect = 2e-23
Identities = 158/218 (72%), Gaps = 0/218 (0%)
Strand=Plus/Minus
Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704
||||| | ||||| ||||| ||| ||| ||||| ||||| ||||| || || |||||
Sbjct 2384166 AGACGGAGAACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGG 2384107
Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764
| || || ||||||||||| ||||| ||||| | ||| ||||| | || | || |||
Sbjct 2384106 CCATCTTCCAGCTGCTTGCCTGCGAAGATCAGCCTCTGCTGGTCGGGAGGGATGCCCTCT 2384047
Query 41765 TTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTT 41824
|| ||| ||| || ||||| | | || || || | ||||||||||| ||
Sbjct 2384046 TTATCCTGGATCTTGGCCTTCACATTCTCAATGGTATCACTGGGCTCCACCTCCAGGGTA 2383987
Query 41825 ATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862
|| || || || ||||| ||||| ||||| ||||||||
Sbjct 2383986 ATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 2383949
Score = 114 bits (126), Expect = 1e-20
Identities = 156/218 (72%), Gaps = 0/218 (0%)
Strand=Plus/Minus
Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704
||||| | ||||| ||||| ||| ||||||||| ||||| ||||| || || |||||
Sbjct 2383938 AGACGCAGGACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAAAGAGTGCGG 2383879
Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764
| || || ||||||||||| ||||| ||||| | ||| ||||| | || | || |||
Sbjct 2383878 CCATCTTCCAGCTGCTTGCCTGCGAAGATCAGCCTCTGCTGGTCAGGAGGGATGCCCTCT 2383819
Query 41765 TTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTT 41824
|| ||| ||| || ||||| | | || || || | ||| ||||| | ||
Sbjct 2383818 TTATCCTGGATCTTGGCCTTCACATTCTCAATGGTATCACTGGGCTCAACCTCTAGAGTG 2383759
Query 41825 ATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862
|| || || || |||| ||||| ||||| ||||||||
Sbjct 2383758 ATGGTCTTGCCAGTCAAGGTCTTCACGAAGATCTGCAT 2383721
>seq36
Length=17049061
Score = 100 bits (110), Expect = 3e-16
Identities = 159/228 (70%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694
|||||| | ||||| | |||||| | || || ||| ||||| ||||| ||||| ||
Sbjct 7362808 GCCGCCCCTGAGACGGAGAACCAGACGAAGGGTAGACTCTTTCTGGATGTTGTAGTCAGA 7362867
Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754
|| ||| | | || || | ||||||||| ||||| ||||| | ||| ||||| | ||
Sbjct 7362868 AAGAGTGTGGCCATCTTCCACCTGCTTGCCTGCGAAGATCAGCCTCTGCTGGTCAGGAGG 7362927
Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCAC 41814
|| || ||| || ||| ||| || ||||| | | || || | | ||||||
Sbjct 7362928 AATGCCCTCTTTATCCTGGATCTTGGCCTTCACTTTCTCAATGGTATCAATGGGCTCCAC 7362987
Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862
||||| | || || || || ||||| ||||| | ||| ||||||||
Sbjct 7362988 CTCCAGGATAATGGTCTTGCCGGTCAGGGTCTTCATGAAGATCTGCAT 7363035
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 461927262691600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |