Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dipodomys_20ordii_20[refseq_20GCF_5F000151885.1_202014-12-12] 65,193 sequences; 2,236,368,823 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq66 140 3e-28 seq147 123 2e-23 seq36 100 3e-16 >seq66 Length=5789316 Score = 140 bits (154), Expect = 3e-28 Identities = 161/217 (74%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 41647 ACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTC 41706 ||| | |||||| ||||| ||| ||||||||| ||||| ||||| || ||||| || | Sbjct 2649883 ACGGAGCACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTACGGCC 2649824 Query 41707 GTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTT 41766 || || ||||||||||| || || ||||| | ||| ||||| | ||||| || ||||| Sbjct 2649823 ATCTTCCAGCTGCTTGCCCGCAAAGATCAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTT 2649764 Query 41767 GTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTTAT 41826 |||| ||| || ||| | | | ||||| || | ||||||||||| || || Sbjct 2649763 GTCCTGGATCTTAGCCTTGACATTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGAT 2649704 Query 41827 CGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 || || || ||||| ||||| ||||| ||||||||| Sbjct 2649703 GGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCATG 2649667 Score = 127 bits (140), Expect = 2e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| || || ||||| | |||||| ||||| ||| ||||||||| ||||| ||||| || Sbjct 2649667 GCCACCTCGGAGACGGAGCACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGA 2649608 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 ||||| || | || || ||||||||||| || || |||| | ||| || || | || Sbjct 2649607 CAGGGTACGGCCATCTTCCAGCTGCTTGCCTGCAAAGATCAACCTCTGCTGATCAGGTGG 2649548 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCAC 41814 | || |||||||||| ||| || ||| | | | ||||| || | |||||| Sbjct 2649547 TATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCCAC 2649488 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||||| || || || || || ||||| ||||| || || |||||||| Sbjct 2649487 CTCCAAGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 2649440 >seq147 Length=2532799 Score = 123 bits (136), Expect = 2e-23 Identities = 158/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 ||||| | ||||| ||||| ||| ||| ||||| ||||| ||||| || || ||||| Sbjct 2384166 AGACGGAGAACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGG 2384107 Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764 | || || ||||||||||| ||||| ||||| | ||| ||||| | || | || ||| Sbjct 2384106 CCATCTTCCAGCTGCTTGCCTGCGAAGATCAGCCTCTGCTGGTCGGGAGGGATGCCCTCT 2384047 Query 41765 TTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTT 41824 || ||| ||| || ||||| | | || || || | ||||||||||| || Sbjct 2384046 TTATCCTGGATCTTGGCCTTCACATTCTCAATGGTATCACTGGGCTCCACCTCCAGGGTA 2383987 Query 41825 ATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || || || || ||||| ||||| ||||| |||||||| Sbjct 2383986 ATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 2383949 Score = 114 bits (126), Expect = 1e-20 Identities = 156/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 ||||| | ||||| ||||| ||| ||||||||| ||||| ||||| || || ||||| Sbjct 2383938 AGACGCAGGACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAAAGAGTGCGG 2383879 Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764 | || || ||||||||||| ||||| ||||| | ||| ||||| | || | || ||| Sbjct 2383878 CCATCTTCCAGCTGCTTGCCTGCGAAGATCAGCCTCTGCTGGTCAGGAGGGATGCCCTCT 2383819 Query 41765 TTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTT 41824 || ||| ||| || ||||| | | || || || | ||| ||||| | || Sbjct 2383818 TTATCCTGGATCTTGGCCTTCACATTCTCAATGGTATCACTGGGCTCAACCTCTAGAGTG 2383759 Query 41825 ATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || || || || |||| ||||| ||||| |||||||| Sbjct 2383758 ATGGTCTTGCCAGTCAAGGTCTTCACGAAGATCTGCAT 2383721 >seq36 Length=17049061 Score = 100 bits (110), Expect = 3e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 |||||| | ||||| | |||||| | || || ||| ||||| ||||| ||||| || Sbjct 7362808 GCCGCCCCTGAGACGGAGAACCAGACGAAGGGTAGACTCTTTCTGGATGTTGTAGTCAGA 7362867 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 || ||| | | || || | ||||||||| ||||| ||||| | ||| ||||| | || Sbjct 7362868 AAGAGTGTGGCCATCTTCCACCTGCTTGCCTGCGAAGATCAGCCTCTGCTGGTCAGGAGG 7362927 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCAC 41814 || || ||| || ||| ||| || ||||| | | || || | | |||||| Sbjct 7362928 AATGCCCTCTTTATCCTGGATCTTGGCCTTCACTTTCTCAATGGTATCAATGGGCTCCAC 7362987 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||||| | || || || || ||||| ||||| | ||| |||||||| Sbjct 7362988 CTCCAGGATAATGGTCTTGCCGGTCAGGGTCTTCATGAAGATCTGCAT 7363035 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 461927262691600