Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ellobius_20lutescens_20[genbank_20GCA_5F001685075.1_202016-07-14] 58,423 sequences; 2,353,188,398 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq4138 122 9e-23 seq137 93.3 4e-14 seq3167 84.2 2e-11 >seq4138 Length=267950 Score = 122 bits (134), Expect = 9e-23 Identities = 298/451 (66%), Gaps = 3/451 (1%) Strand=Plus/Plus Query 15906 CCATTCTTTGGTAATCACTAACGCGTTTTTCGAAGAAGTTAGTTTTTCCCTCTAAAGATA 15965 |||| || || || || | || || || || |||||||| || || || ||||| || | Sbjct 162579 CCATCCTCTGATACTCGCCCACTCGCTTCTCAAAGAAGTTTGTCTTCCCTTCTAATGAAA 162638 Query 15966 TATTTTCCATAAAATCAAAGGGATTAGTAGCTGAAAATATCTTAGAGTACCCCAGTTCCG 16025 |||||||||| | ||||| ||||| || || ||||| | |||| || ||| Sbjct 162639 TATTTTCCATGAGGTCAAACGGATTTTCTACTTTGAAAATCTTGCTGAACCCTAGCTCCA 162698 Query 16026 TAACTAATCTATCTGCTACAAATTCTATATATTGACACATTAAGTCGCAATTAATTCCTA 16085 | | || || | || ||||| || || || ||| | | ||| || || || | Sbjct 162699 GCATAAGCCTGTCCGGCACGAATTCGATGTACTGCTTCATCAGGGTGCAGTTCATCCCGA 162758 Query 16086 TAAGTCGTACCGGAAGAGCTTTTGTTAAAAATTGTTGTTCTATCACAACCGCTTCTTTAA 16145 | || || || || || | || | ||| | || |||| | || || | | Sbjct 162759 TGAGATTCACAGGCAGGGCCTCCGTGAGAAACTCCTGCTCTAGCCTCACTGCAC---TGA 162815 Query 16146 TGATATCGGTGGCTCGTGTTTCAGACGGTGTATGGTTTAGGTGTTTAAACATTAGACACG 16205 |||| || ||| || || ||||| | || ||||| | ||||| || || | Sbjct 162816 TGATTTCTTGTACTCTTGGCTCCGACGGCTTGTGTACCAGGTGCCTGAACATCAGGCAGG 162875 Query 16206 CGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCTG 16265 | ||| | || ||| || || |||||||| ||||| ||||||||||| || | || | Sbjct 162876 CAAAGACACAGGGTAAACCCTCATCTCTGCTAATAAGCTCGTTGGAAAATGTAAGGCCAG 162935 Query 16266 GCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCAAATGACCCCGAAAAGAATATAC 16325 |||| ||| |||||||| | ||||||||| | ||||| || || || ||||| || | Sbjct 162936 GCATCAGTCCCCGTTTCTTGAGCCAGAATATTGATGCAAAAGAGCCAGAGAAGAAGATCC 162995 Query 16326 CCTCAACAGATGCAAAAGCGATTAATCGTTC 16356 | || |||| ||||| || | | |||||| Sbjct 162996 CTTCTACAGCAGCAAAGGCCACAACTCGTTC 163026 >seq137 Length=869495 Score = 93.3 bits (102), Expect = 4e-14 Identities = 99/131 (76%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 16226 TCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCTGGCATTTTTCCTCGTTTCTTT 16285 || |||||||| ||||| ||||||||||| || | || ||||| ||| |||||||| Sbjct 366587 TCATCTCTGCTAATAAGCTCGTTGGAAAATGTAAGGCCAGGCATCAGTCCCCGTTTCTTG 366646 Query 16286 AACCAGAATATCGCAGCAAATGACCCCGAAAAGAATATACCCTCAACAGATGCAAAAGCG 16345 | ||||||||| | ||||| || || || ||||| || || || |||| ||||| || Sbjct 366647 AGCCAGAATATTGATGCAAAAGAGCCAGAGAAGAAGATCCCTTCTACAGCAGCAAAGGCC 366706 Query 16346 ATTAATCGTTC 16356 | | |||||| Sbjct 366707 ACAACTCGTTC 366717 >seq3167 Length=233518 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 16224 CTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCTGGCATTTTTCCTCGTTTCT 16283 |||| || |||||||| |||||||| || ||||| | || ||||| |||| |||| Sbjct 45203 CTTCATCCCTGCTGATCAGTTCGTTTGAGAAAGTGAGTCCGGGCATGAGGCCTCTCTTCT 45144 Query 16284 TTAACCAGAATATCGCAGCAAATGACCCCGAAAAGAATATACCCTCAACAGATGCAAAAG 16343 | | |||||| || |||||||||||||| || ||||| | || || || | ||||| | Sbjct 45143 TCAGCCAGAAGATAGCAGCAAATGACCCAGAGAAGAAAACGCCTTCCACGGCAGCAAAGG 45084 Query 16344 CGATTAATCGTTCC 16357 | | | || |||| Sbjct 45083 CCACCACTCTTTCC 45070 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511040920456360