Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ellobius_20lutescens_20[genbank_20GCA_5F001685075.1_202016-07-14] 58,423 sequences; 2,353,188,398 total letters Query= NC_001348.1 Length=124884 Score E Sequences producing significant alignments: (Bits) Value seq11739 104 2e-17 seq19747 95.1 1e-14 seq948 93.3 3e-14 seq24782 84.2 2e-11 >seq11739 Length=28935 Score = 104 bits (114), Expect = 2e-17 Identities = 270/408 (66%), Gaps = 4/408 (1%) Strand=Plus/Minus Query 18579 TTTGGAATGCAAGCTCGATACAATTTGCGAAATGAATTTCCTCTTTTAACTACAAAGCGT 18638 || || ||||| || | |||||| || || ||||||||||||| | | || || || Sbjct 18718 TTAGGCATGCAGGCGCCATACAACCTGAGAGATGAATTTCCTCTGCTCATAACCAAACGA 18659 Query 18639 GTTTTTTGGAGGGCCGTCGTGGAAGAGTTGTTATGGTTTATCCGCGGGTCAACCGATTCC 18698 || || |||| || || || | ||| || | ||||||||| || || || | | Sbjct 18658 GTGTTCTGGAAGGGTGTTTTGAAGGAGGTGCTGTGGTTTATCAAGGGATCCACAACTGCT 18599 Query 18699 AAAGAACTCGCCGCTAAAGATATACACATATGGGATATATACGGATCGAGCAAATTTCTA 18758 |||||||| ||| | |||| | || |||||| | || || | | ||||| Sbjct 18598 AAAGAACTGGCCTCCAAAGGAGTGAGAATCTGGGATGCCAATGGGTCCCGACATATTCTA 18539 Query 18759 AATAGGAATGGCTTCCATAAAAGACACACGGGGGACCTTGGCCCCATTTACGGCTTCCAG 18818 | || | || ||| | | |||| ||||| | ||||| ||||||| ||||| Sbjct 18538 GACAGCATGGGATTCTCTGCACGACAGGAAGGGGAGTTGGGCCCAGTTTACGGTTTCCAT 18479 Query 18819 TGGAGACATTTTGGAGCGGAATATAAAGACTGTCAATCAAACTATTTACAGCAAGGAATC 18878 | ||||||||||| ||| || || ||||| | ||| | || || |||||| | Sbjct 18478 TAGAGACATTTTGTAGCAGACTACAAAGATATGGATTCAGATTACTTGAGTCAAGGAGTA 18419 Query 18879 GATCAGCTGCAAACTGTTATAGATACAATTAAAACAAACCCAGAAAGCCGACGAATGATT 18938 | |||||||||| || || | ||| | ||||| | || || | || |||| | Sbjct 18418 GGCCAGCTGCAAAAAGTGATTG--ACAGTCAAAACCAGTCCTGACAAGAGAAGAATCTTG 18361 Query 18939 ATATCGTCTTGGAATCCAAAGGATATCCCCTTAATGGTACTACCTCCA 18986 || | || | |||| ||||| ||| | ||| | |||| ||| |||||| Sbjct 18360 ATGT-GT-TCGGAACCCAAAAGATCTTCCCCTGATGGCACTTCCTCCA 18315 >seq19747 Length=23491 Score = 95.1 bits (104), Expect = 1e-14 Identities = 112/152 (74%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 18960 GATATCCCCTTAATGGTACTACCTCCATGTCACACGTTATGTCAGTTTTACGTTGCAAAC 19019 ||| | ||| |||||| ||| ||||| || || | | ||||| || || || || || Sbjct 2635 GATCTTCCCCTAATGGCACTGCCTCCTTGCCATGCCCTCTGTCAATTCTATGTAGCTAAT 2694 Query 19020 GGTGAATTATCCTGCCAAGTATACCAGAGATCGGGGGATATGGGCCTTGGGGTACCGTTC 19079 || || | || ||||| | |||||||| || || ||||||||||| || || || ||| Sbjct 2695 GGGGAGCTGTCTTGCCAGCTCTACCAGAGGTCAGGAGATATGGGCCTGGGCGTGCCCTTC 2754 Query 19080 AACATTGCTGGATATGCACTTCTTACCTACAT 19111 |||||||| | ||| | || || |||||||| Sbjct 2755 AACATTGCCAGCTATTCCCTGCTCACCTACAT 2786 >seq948 Length=285047 Score = 93.3 bits (102), Expect = 3e-14 Identities = 155/220 (70%), Gaps = 3/220 (1%) Strand=Plus/Minus Query 19140 GGAGATTTAATTCATACAATGGGGGATGCACATATTTACTTGAATCATATAGATGCTTTA 19199 || ||||| | || || |||| ||||||||||||||| |||||||||| || || | Sbjct 208650 GGGGATTTTGTCCACACCTTGGGAGATGCACATATTTACCTGAATCATATCGA-GCCCTG 208592 Query 19200 AAAGTGCAGCTAGCTCGATCCCCAAAACCTTTTCCTTGCCTTAAAATTATTCGAAATGTA 19259 ||| | ||||| ||| |||| |||||| || || |||||| ||| ||| || Sbjct 208591 AAAATTCAGCTTCAGCGAGAGCCAAGACCTTTCCCAAAGCTCAAAATTCTTCAAAAAGT- 208533 Query 19260 ACAGA-TATAAACGACTTTAAATGGGACGATTTTCAGCTTGATGGATATAATCCACAccc 19318 ||| || | || || ||| || || |||||| |||| || ||||||| ||| || Sbjct 208532 TGAGACAATTGATGATTTCAAAGTTGAAGACTTTCAGATTGAAGGTTATAATCTACATCC 208473 Query 19319 cccccTAAAAATGGAAATGGCTCTTTAATGGATTTTTAAA 19358 | | |||||||||||||| |||| | |||| ||| Sbjct 208472 AGCGATTAAAATGGAAATGGCCATTTAGAGCTTTTTCAAA 208433 >seq24782 Length=13686 Score = 84.2 bits (92), Expect = 2e-11 Identities = 124/176 (70%), Gaps = 0/176 (0%) Strand=Plus/Plus Query 18960 GATATCCCCTTAATGGTACTACCTCCATGTCACACGTTATGTCAGTTTTACGTTGCAAAC 19019 ||| | ||| | |||| ||| ||||| || | | | ||||| || || || | || Sbjct 3083 GATCTTCCCCTGATGGCACTGCCTCCTTGCCTTGCCCTCTGTCAATTCTATGTAGTGAAT 3142 Query 19020 GGTGAATTATCCTGCCAAGTATACCAGAGATCGGGGGATATGGGCCTTGGGGTACCGTTC 19079 || || | || ||||| | |||||||| || || ||||| ||||| || || || ||| Sbjct 3143 GGGGAGCTGTCTTGCCAGCTCTACCAGAGGTCAGGAGATATTGGCCTGGGCGTGCCCTTC 3202 Query 19080 AACATTGCTGGATATGCACTTCTTACCTACATAGTAGCGCATGTTACAGGACTTAA 19135 |||||||| | ||||| || || |||||||| | || || | ||||| || || Sbjct 3203 AACATTGCCAGCTATGCCCTGCTCACCTACATGATTGCACACATCACAGGCCTAAA 3258 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 399219541042035