Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ellobius_20lutescens_20[genbank_20GCA_5F001685075.1_202016-07-14] 58,423 sequences; 2,353,188,398 total letters Query= NC_001350.1 Length=112930 Score E Sequences producing significant alignments: (Bits) Value seq300 172 4e-38 seq1504 132 3e-26 seq2126 107 1e-18 >seq300 Length=431078 Score = 172 bits (190), Expect = 4e-38 Identities = 259/368 (70%), Gaps = 0/368 (0%) Strand=Plus/Minus Query 4000 TACTTAATACTTTTCTCTTCTTGCACATTAGAAAGAACACTTGGATATTCTATCAAAAGT 4059 ||||||| | || || || || || | |||||| |||| || |||||| ||| || Sbjct 222092 TACTTAAAGCCGTTTTCCTCCTGGACTTCAGAAAGGACACCTGTGTATTCTGGGAAATGT 222033 Query 4060 TTGTATTTCTCTAGATCAAATTCTGGAAAAAAGGTGTCACATTCAAAGTCTTGCATGATC 4119 || ||| | | ||||||| |||||| |||| |||||| |||| | || ||| ||||| Sbjct 222032 TTATATCTTCCCAGATCAATTTCTGGGAAAACCATGTCACTTTCAGATTCCTGCTTGATC 221973 Query 4120 CTAGTCACAAACAGTTTAAGATCGCATGGATAACTCATAGCTTCTTTATACACAGAACTA 4179 | |||||||| ||||| | | | ||| | | |||| ||| | | || || ||||| Sbjct 221972 TTTGTCACAAATAGTTTGACGTGGTCTGGCTGATTCATGGCTCCCTCATGAACGGAACTG 221913 Query 4180 CCTCCAATTATCCAGACCATGTCTACTTTATTTGCTAATTCTGGCTGTTCGGTAAGTTTT 4239 |||| | |||| ||| ||||||||||| ||| |||||| || ||||| ||||||||| Sbjct 221912 CCTCTGGCTGTCCAAACCTTGTCTACTTTAGTTGGTAATTCCGGTTGTTCAGTAAGTTTT 221853 Query 4240 AAAGCATCATCTAAACTCTTAGCTAAAAAATGAGCTCTATGTGGAAGCTCCTTTAGTTCC 4299 || ||| || | ||| || | | |||||||| || | || | ||||| || || Sbjct 221852 AAGACATTGTCCAGACTTTTGACAAGAAAATGAGTTCCTTTTGATGGTTCCTTGAGGTCT 221793 Query 4300 TTGCTGAGAACAACATTAATTCTGCCTTTTAAAGGCCGGTTCTTCTCAGGAATTGAGAAC 4359 |||||||| | | ||||||| |||| ||| || | |||||||| |||| | Sbjct 221792 CCACTGAGAACTATGTGAATTCTGTTCTTTACCAGCCCATTTTCCTCAGGAACGGAGATC 221733 Query 4360 CAAGTCTT 4367 || || || Sbjct 221732 CAGGTTTT 221725 >seq1504 Length=227043 Score = 132 bits (146), Expect = 3e-26 Identities = 111/135 (82%), Gaps = 1/135 (1%) Strand=Plus/Plus Query 4149 ATAACTCATAGCTTCTTTATACACAGAACTACCTCCAATTATCCAGACCATGTCTACTTT 4208 ||||||| || | | || || |||||||| ||||||| |||||| |||||||||||||| Sbjct 166905 ATAACTC-TACTTACCTTGTAAACAGAACTGCCTCCAACTATCCAAACCATGTCTACTTT 166963 Query 4209 ATTTGCTAATTCTGGCTGTTCGGTAAGTTTTAAAGCATCATCTAAACTCTTAGCTAAAAA 4268 ||||||||| ||||| ||||| ||||||||| |||||||| | ||| || || | ||| Sbjct 166964 ATTTGCTAACTCTGGTTGTTCAATAAGTTTTAGGGCATCATCCAGACTTTTGGCAAGAAA 167023 Query 4269 ATGAGCTCTATGTGG 4283 |||||||| ||||| Sbjct 167024 ATGAGCTCCTTGTGG 167038 Score = 102 bits (112), Expect = 6e-17 Identities = 88/109 (81%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 4290 CTTTAGTTCCTTGCTGAGAACAACATTAATTCTGCCTTTTAAAGGCCGGTTCTTCTCAGG 4349 ||| || || |||||||||| | ||| |||||| |||||||||| || ||||||||||| Sbjct 174208 CTTGAGCTCTCTGCTGAGAACTATATTGATTCTGTCTTTTAAAGGTCGATTCTTCTCAGG 174267 Query 4350 AATTGAGAACCAAGTCTTTTTACCCATAATCACTAAATTCTGTTTATCT 4398 ||| |||||||| || || ||||||||||| | ||||||||| || Sbjct 174268 AATGGAGAACCAGGTTTTCCGGCCCATAATCACAAGGTTCTGTTTACCT 174316 Score = 89.7 bits (98), Expect = 4e-13 Identities = 93/122 (76%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 4056 AAGTTTGTATTTCTCTAGATCAAATTCTGGAAAAAAGGTGTCACATTCAAAGTCTTGCAT 4115 ||||||||||||| | | ||||| |||||| || || ||||||| |||||| || ||||| Sbjct 164061 AAGTTTGTATTTCCCCAAATCAATTTCTGGGAAGAATGTGTCACTTTCAAATTCCTGCAT 164120 Query 4116 GATCCTAGTCACAAACAGTTTAAGATCGCATGGATAACTCATAGCTTCTTTATACACAGA 4175 |||||| || | || ||| | |||| || ||| | | ||| ||||| || | ||| | Sbjct 164121 GATCCTTGTTATGAAGAGTCTGAGATGGCCTGGCTGATCCATGGCTTCCTTTAAAACAAA 164180 Query 4176 AC 4177 || Sbjct 164181 AC 164182 >seq2126 Length=457682 Score = 107 bits (118), Expect = 1e-18 Identities = 166/237 (70%), Gaps = 0/237 (0%) Strand=Plus/Plus Query 26936 TTAGTCTACATTGTGAACAATGGGAGTAACGCATGTGCAGCCTACAGTCACTAGCATCTT 26995 |||| | |||| | | || |||| | ||||| |||||||| ||| ||| |||||||| Sbjct 315982 TTAGGCAACATGGCGGACGATGGAGGACACGCAGGTGCAGCCCACACCCACAAGCATCTT 316041 Query 26996 CTCTAGCCTAAATGAATTAGGGCAGGGTTGATGCCCTTTGCGCACCACTAGAATCTCTTG 27055 ||| | || || || |||||| | | || | | | || || || | |||||| Sbjct 316042 CTCCACCCGGAAGGAGAGGGGGCAGTTCTCAGGCTCCCTCCTCAGGACCAGGACCTCTTG 316101 Query 27056 TTGGATAGGGACTGAGTTCATGTGGTAGTCTACATTCCCATCAGCATTAACACATCCTAA 27115 |||| | || ||||||||||||| || | ||||| | |||||| ||||| | Sbjct 316102 CTGGAGGAGAACAGAGTTCATGTGGTGCTCCAACTTCCCCTGAGCATTGACACAGCGCTG 316161 Query 27116 GTAGCGACACTTTGCTTCCCAAATCACAGAGGGATATCTATCTTGATCTTCATTGCG 27172 || ||| |||| ||| ||||| |||||||| |||||||| | | || || ||||| Sbjct 316162 GTGGCGGCACTGTGCCTCCCAGATCACAGAAGGATATCTGTTAGGGTCCTCGTTGCG 316218 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 360993978195173