Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ellobius_20lutescens_20[genbank_20GCA_5F001685075.1_202016-07-14] 58,423 sequences; 2,353,188,398 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq4138 136 5e-27 seq686 132 6e-26 seq9705 116 4e-21 seq137 114 2e-20 seq3167 102 1e-16 >seq4138 Length=267950 Score = 136 bits (150), Expect = 5e-27 Identities = 335/503 (67%), Gaps = 10/503 (2%) Strand=Plus/Plus Query 23795 GTCAACATCTAAAGAAAAATGATTGTCTTCTTGA---GACATAACTCCCATTTTTTGGTA 23851 |||| |||| || | ||| ||| ||| || | ||||| || |||| | || || Sbjct 162532 GTCAGCATCCAAGGTGAAAGAATTCTCTGCTGAATTTGACATCACCTCCATCCTCTGATA 162591 Query 23852 TTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGATATATTTTCCATGAA 23911 || ||||| || || || || || || || || ||||||||||| ||||||||||||| Sbjct 162592 CTCGCCCACTCGCTTCTCAAAGAAGTTTGTCTTCCCTTCTAATGAAATATTTTCCATGAG 162651 Query 23912 ATCGGATGGATTGGTAACATTATAGATTCTTTTAAATCCCAATTCAGAAATCAATCTATC 23971 || | ||||| || || | || | | || || | || || | || || Sbjct 162652 GTCAAACGGATTTTCTACTTTGAAAATCTTGCTGAACCCTAGCTCCAGCATAAGCCTGTC 162711 Query 23972 TGCGACAAACTCCATATATGTTTTCATCATTTCACAATTCATTCCTATAAGTTTAACTGG 24031 | || || || || || ||||||| || ||||| || || || || || || Sbjct 162712 CGGCACGAATTCGATGTACTGCTTCATCAGGGTGCAGTTCATCCCGATGAGATTCACAGG 162771 Query 24032 AAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAATAGATCTTAC 24091 || ||| | || ||||| || || || | || || ||| || || | ||| Sbjct 162772 CAGGGCCTCCGTGAGAAACTCCTGCTCTAGCCTCACTGCA-CTG--ATGATTTCTTGTAC 162828 Query 24092 TGTTTCTTCACTCGG--TGGATACAATAAATGTTTAAACATCAAACATGCGAAATCGCAG 24149 | || || ||| || ||| | || | ||||||| || || || | ||| Sbjct 162829 TCTTGGCTCCGACGGCTTGTGTACCAGG--TGCCTGAACATCAGGCAGGCAAAGACACAG 162886 Query 24150 TGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCA 24209 ||| |||||| ||||| ||||| | ||||||||||| || || || ||||| || || Sbjct 162887 GGTAAACCCTCATCTCTGCTAATAAGCTCGTTGGAAAATGTAAGGCCAGGCATCAGTCCC 162946 Query 24210 CGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCC 24269 || || || ||||| ||||| || ||||| || ||||| ||||| || |||||||| || Sbjct 162947 CGTTTCTTGAGCCAGAATATTGATGCAAAAGAGCCAGAGAAGAAGATCCCTTCTACAGCA 163006 Query 24270 GCAAAGGCAATAAGTCTTTCTCC 24292 |||||||| | || || |||||| Sbjct 163007 GCAAAGGCCACAACTCGTTCTCC 163029 >seq686 Length=494244 Score = 132 bits (146), Expect = 6e-26 Identities = 247/358 (69%), Gaps = 11/358 (3%) Strand=Plus/Plus Query 21883 TCCGGTTGATCCAAACCCT--TGATCTCCTCTATCTGTACTATCTAGAGATTGTACTTCT 21940 ||| || || ||||| ||| ||| ||||| | ||| |||| || |||| |||||| Sbjct 395293 TCCAGTGGAGCCAAAACCTCCTGAGCTCCTTTCAGTGT--TATCCAGTGATTCAACTTCT 395350 Query 21941 TTCAGTTCTGGATAATATATACGTTGATAGATTAGCTGAGCTATTCTATCCCCCGTATTT 22000 | | ||||||||| | || |||| | |||| ||||| || || | ||| || | ||| Sbjct 395351 TCTAAGTCTGGATAAAAAATTCGTTCACAGATGAGCTGTGCAATCCGATCACCTTTTTTT 395410 Query 22001 ACATTAAATGTATATTTTCCATTATTAATAAGAATGACTCCTATATTTCCCCTATAATCT 22060 || | ||| | | ||||||| |||| || | || || | |||||| ||||||||| Sbjct 395411 ACTTCAAACTTCTCTTTTCCAAAGTTAAACAGCACAACACCAACATTTCCTCTATAATCT 395470 Query 22061 TCGTCTATTACACCGCCTCCTATATCAATGCCTT---TTAGGGACAGACCAGACCTAGGA 22117 | |||||| |||||| |||||| ||| ||| | ||| | || ||||||| || Sbjct 395471 TTGTCTATGACACCGGCTCCTACATCTATGAAGTGCTTTACTGCCAAGCCAGACCATAGA 395530 Query 22118 GCTATTCTACCATAGCAGAACTTAGGCATGGACATACTAATATCTGTCTTAATTAATTGT 22177 |||| ||| || ||||| ||| || | || ||| ||||| || | | || Sbjct 395531 GCTACTCTTCCGTAGCACCCAGAAGGAATAGCGATCTGAATGTCTGTTTTCACAA--TGG 395588 Query 22178 CTTTCTCCT--GGAGGGATAGTATAATCATAAGCGCTATATAAATCATATCCGGCGGC 22233 |||||||| || || || ||||||||||| || | ||| | ||||| || || || Sbjct 395589 CTTTCTCCATGGGTGGTATTGTATAATCATAGGCACCATACAGGTCATAGCCTGCAGC 395646 >seq9705 Length=66704 Score = 116 bits (128), Expect = 4e-21 Identities = 108/137 (79%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 53150 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACA 53209 || ||||||||||| ||||| || || || ||||| || |||||||| || || || | Sbjct 25042 ACCTGAAATTCTCCTGACAAGACCCTGCGCGTGTAGATGTTACTGGTGTAAGGCTCAATG 24983 Query 53210 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 53269 ||||||||||| |||| ||| ||||||||||| ||||| ||||| || || | | |||| Sbjct 24982 GACTCATTATTCCCCAGAATCTGAGCAGTTGAAGCAGTAGGCATTGGGGCAATAAGTAAA 24923 Query 53270 CTATTTCTAAGACCGTA 53286 || ||||| | ||| || Sbjct 24922 CTGTTTCTTATACCATA 24906 Score = 102 bits (112), Expect = 1e-16 Identities = 122/166 (73%), Gaps = 0/166 (0%) Strand=Plus/Minus Query 54768 CACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAA 54827 |||| || | ||| |||||||||||||| | || || || || || || || |||| | Sbjct 8322 CACTGAACACTTTCTTTGTTTCTTTGTGCAAGTTGGAGACAGCAATCCTTGCTGCTAAGA 8263 Query 54828 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGTCAGAGTGTCCA 54887 ||||||| || || || | |||||| | || || ||| | || || | |||||| |||| Sbjct 8262 TGGCATAGTCAGGGTGCTTTGTAGTCAAGGTTGCAGCTGTCTCAGCAGCCAGAGTATCCA 8203 Query 54888 ATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCAT 54933 ||| || || || |||||| | || | |||||||| || ||||| Sbjct 8202 GTTCCACTGTGGTGACTCCACTGTACAGGCCTTGGATTACTTTCAT 8157 Score = 96.9 bits (106), Expect = 4e-15 Identities = 124/171 (73%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 52875 TCCATCCGTAAAAATGCATACTTGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 52934 |||| ||||| || ||||||||||| |||||| ||| | || || || || ||||| | Sbjct 28164 TCCAGCCGTAGAAGTGCATACTTGTGAGTTTGCCATAGTTGGGCTCAGCAATGTGGATGT 28105 Query 52935 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 52994 | | ||| || |||||||||||||| || || || || || ||||| || | | |||| Sbjct 28104 TTAAAGACTGGCTTTGATCGATGAAAGCACCTCTCTCAGCGGCCATCTTGAGAACAGTCT 28045 Query 52995 TTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAA 53045 | || | |||||||| | || ||||| | |||| | || || |||| Sbjct 28044 TCTGAGAGATTTCCCACACCGTCTTATAGAGCTGCTTCAGGTCATCAGGAA 27994 Score = 82.4 bits (90), Expect = 9e-11 Identities = 99/135 (73%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 54025 CTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCT 54084 || |||||| ||||| |||||||| ||||||||||| || | || ||||| | || || Sbjct 18669 CTCCACTCGCTTCATGAAGAGATCCGGAATCCAAAGGGCAAAGAAGAGATCCCGGGCTCG 18610 Query 54085 ATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCA 54144 || || || || ||||| ||||| || | || |||||| | | || || | ||||| Sbjct 18609 CTGCTCTTCCTTCCCTGTGTTCTTCTTCAAGTCAAGGAACTCAAAGATGTCTAAGTGCCA 18550 Query 54145 CGGTTCCAAGTATAT 54159 || |||| ||| || Sbjct 18549 AGGCTCCAGGTAAAT 18535 >seq137 Length=869495 Score = 114 bits (126), Expect = 2e-20 Identities = 107/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 24157 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 24216 |||| ||||| ||||| | ||||||||||| || || || ||||| || || || || | Sbjct 366585 CCTCATCTCTGCTAATAAGCTCGTTGGAAAATGTAAGGCCAGGCATCAGTCCCCGTTTCT 366644 Query 24217 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 24276 | ||||| ||||| || ||||| || ||||| ||||| || |||||||| || ||||||| Sbjct 366645 TGAGCCAGAATATTGATGCAAAAGAGCCAGAGAAGAAGATCCCTTCTACAGCAGCAAAGG 366704 Query 24277 CAATAAGTCTTTCTCC 24292 | | || || |||||| Sbjct 366705 CCACAACTCGTTCTCC 366720 Score = 84.2 bits (92), Expect = 3e-11 Identities = 52/56 (93%), Gaps = 0/56 (0%) Strand=Plus/Plus Query 24324 GCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGATA 24379 ||||| |||||||||||||| ||||||||||||||||| |||||||| |||||||| Sbjct 366884 GCCCAGTCGGCCTTCTTTTTCACACAAGGCATTGTCTCAATAGCATTGAAGAGATA 366939 >seq3167 Length=233518 Score = 102 bits (112), Expect = 1e-16 Identities = 103/134 (77%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 24159 TCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 24218 || || || || || | |||||| || || |||||||||||||| ||||| | ||| || Sbjct 45201 TCATCCCTGCTGATCAGTTCGTTTGAGAAAGTGAGTCCGGGCATGAGGCCTCTCTTCTTC 45142 Query 24219 AGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCA 24278 ||||| || || | |||||||| ||||| ||||||| ||||| || || |||||||| Sbjct 45141 AGCCAGAAGATAGCAGCAAATGACCCAGAGAAGAAAACGCCTTCCACGGCAGCAAAGGCC 45082 Query 24279 ATAAGTCTTTCTCC 24292 | | |||||| || Sbjct 45081 ACCACTCTTTCCCC 45068 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593288012537040