Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ellobius_20lutescens_20[genbank_20GCA_5F001685075.1_202016-07-14] 58,423 sequences; 2,353,188,398 total letters Query= NC_001875.2 Length=131995 Score E Sequences producing significant alignments: (Bits) Value seq3025 132 4e-26 seq1738 125 6e-24 seq22505 120 3e-22 seq5999 120 3e-22 seq2959 118 9e-22 seq8984 102 7e-17 seq5338 96.9 3e-15 seq248 95.1 1e-14 seq17328 82.4 6e-11 seq187 82.4 6e-11 >seq3025 Length=599017 Score = 132 bits (146), Expect = 4e-26 Identities = 157/213 (74%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023 || |||| |||| |||||||| || || ||||| ||||| | |||||| || | ||| Sbjct 117924 AGGACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCC 117983 Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCG 21083 |||||||| ||||| ||| | || || ||||||||||| ||| | |||||||||||| Sbjct 117984 TCCAGCTGCTTGCCTGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCTTCCTTGTCC 118043 Query 21084 GCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTC 21143 |||||| || || | ||| || || | |||||| |||| ||| |||||| Sbjct 118044 TGGATCTTGGCCTTGACGTTCTCGATGGTGTCGCTGGGCTCGACCTCCAGGGTGATGGTC 118103 Query 21144 TTGCCGGTTAACGTTTTGACAAATATTTGCATT 21176 || || ||||| ||||| || || || |||||| Sbjct 118104 TTACCAGTTAAGGTTTTCACGAAGATCTGCATT 118136 Score = 107 bits (118), Expect = 2e-18 Identities = 133/182 (73%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023 || |||| |||| |||||||| || || ||||| ||||| | |||||| || | ||| Sbjct 115666 AGGACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCC 115725 Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCG 21083 |||||||| ||||| ||| | || || ||||||||||| ||| | |||||||||||| Sbjct 115726 TCCAGCTGCTTGCCTGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCTTCCTTGTCC 115785 Query 21084 GCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTC 21143 |||||| || || | ||| || || | |||||| |||| ||| |||||| Sbjct 115786 TGGATCTTGGCCTTGACGTTCTCGATGGTGTCGCTGGGCTCGACCTCCAGGGTGATGGTC 115845 Query 21144 TT 21145 || Sbjct 115846 TT 115847 >seq1738 Length=291085 Score = 125 bits (138), Expect = 6e-24 Identities = 162/224 (72%), Gaps = 0/224 (0%) Strand=Plus/Minus Query 20956 GCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTT 21015 |||| | ||||||| |||||||||||||| ||||| || || ||| | | |||||| Sbjct 20117 GCAGGCGAAGCACCAGGTGCAAAGTGGACTCTTTTTGGATATTGTAGACGGACAGGGTCC 20058 Query 21016 GGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTT 21075 || | ||||||||||| ||||| ||| | || || ||||||||||| || | ||||| Sbjct 20057 GGCCATCCTCCAGCTGCTTGCCAGCAAATATCAGCCTCTGCTGGTCAGGTGGGATGCCTT 19998 Query 21076 CCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGG 21135 ||||||| |||||| || || | ||| || |||| |||||| || | | Sbjct 19997 CCTTGTCTTGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCGACCTCAAGAG 19938 Query 21136 TAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATTTTG 21179 | ||||||||||| | | || || ||||| || ||||| ||| Sbjct 19937 TGATGGTCTTGCCCATCAGGGTCTTCACAAAGATCTGCATGTTG 19894 >seq22505 Length=6242 Score = 120 bits (132), Expect = 3e-22 Identities = 165/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || ||||| | ||||||| |||||||||||||| || || ||||| || || | | Sbjct 3181 CCTCCACGCAGACGAAGCACCAGGTGCAAAGTGGACTCTTTCTGGATGTTGTAATCGGAC 3240 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 ||||| || | ||||||||||| ||||| ||| | || || ||||| ||||| || Sbjct 3241 AGGGTCCGGCCATCCTCCAGCTGCTTGCCGGCAAATATCAGCCTCTGATGGTCAGGTGGG 3300 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | |||||||||||| |||||| || | | || ||||||| ||||| Sbjct 3301 ATGCCTTCCTTGTCTTGGATCTTGGCCTTGAAATTCTTGATGGTATCACTGGGCTAGACC 3360 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATTTTG 21179 || | || ||||||||||| | | || || |||||||| ||||| ||| Sbjct 3361 TCAAGAGTGATGGTCTTGCCCATCAGGGTCTTCACAAATATCTGCATGTTG 3411 >seq5999 Length=119422 Score = 120 bits (132), Expect = 3e-22 Identities = 165/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || ||||| | ||||||| |||||||||||||| || || ||||| || || | | Sbjct 3062 CCTCCACGCAGACGAAGCACCAGGTGCAAAGTGGACTCTTTCTGGATGTTGTAATCGGAC 3003 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 ||||| || | ||||||||||| ||||| ||| | || || ||||| ||||| || Sbjct 3002 AGGGTCCGGCCATCCTCCAGCTGCTTGCCGGCAAATATCAGCCTCTGATGGTCAGGTGGG 2943 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | |||||||||||| |||||| || | | || ||||||| ||||| Sbjct 2942 ATGCCTTCCTTGTCTTGGATCTTGGCCTTGAAATTCTTGATGGTATCACTGGGCTAGACC 2883 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATTTTG 21179 || | || ||||||||||| | | || || |||||||| ||||| ||| Sbjct 2882 TCAAGAGTGATGGTCTTGCCCATCAGGGTCTTCACAAATATCTGCATGTTG 2832 >seq2959 Length=310600 Score = 118 bits (130), Expect = 9e-22 Identities = 157/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 20963 GAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTC 21022 ||| |||| |||| |||||||| || || ||||| || || | || || || | || Sbjct 279631 GAGGACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATC 279690 Query 21023 CTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTC 21082 |||||||| ||||| ||| | || |||| ||||||||| ||| | ||| || || || Sbjct 279691 TTCCAGCTGCTTGCCAGCAAAGATGAGTCGCTGCTGGTCGGGGGGGATGCCCTCTTTATC 279750 Query 21083 GGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGT 21142 |||||| ||||| | ||| || |||| |||||| |||| ||| ||||| Sbjct 279751 CTGGATCTTGGCCTTCACGTTCTCGATGGTGTCACTGGGCTCGACCTCCAGGGTGATGGT 279810 Query 21143 CTTGCCGGTTAACGTTTTGACAAATATTTGCATTTTGA 21180 |||||| || || || || || || ||||||||||||| Sbjct 279811 CTTGCCCGTCAAGGTCTTCACGAAGATTTGCATTTTGA 279848 >seq8984 Length=72256 Score = 102 bits (112), Expect = 7e-17 Identities = 94/119 (79%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 20973 TGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGT 21032 |||||||||||||| || || ||||| ||||| | |||||| || | ||||||||||| Sbjct 54599 TGCAAAGTGGACTCTTTCTGGATGTTGTAGTCGGACAGGGTCCGGCCATCCTCCAGCTGC 54540 Query 21033 TTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTT 21091 ||||| ||| | || || ||||||||||| || | |||||||||||| |||||| Sbjct 54539 TTGCCGGCAAATATCAGCCTCTGCTGGTCAGGTGGGATGCCTTCCTTGTCTTGGATCTT 54481 >seq5338 Length=92157 Score = 96.9 bits (106), Expect = 3e-15 Identities = 149/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 20967 ACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCC 21026 |||| |||| |||||||| || || ||||| || || | || || || | || ||| Sbjct 52161 ACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCC 52220 Query 21027 AGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCG 21086 ||||| ||||| ||| | || |||| ||||||||| ||| | ||| || || || | Sbjct 52221 AGCTGCTTGCCAGCAAAGATGAGTCGCTGCTGGTCGGGGGGGATGCCCTCTTTATCCTGG 52280 Query 21087 ATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTG 21146 ||||| ||||| | ||| || |||| ||| || |||| ||| ||||| ||| Sbjct 52281 ATCTTGGCCTTCACGTTCTCGATGGTGTCACTCGGCGCCACCTCCAGGGTGATGGTTTTG 52340 Query 21147 CCGGTTAACGTTTTGACAAATATTTGCATTTTG 21179 | ||| | || || | || |||||||||||| Sbjct 52341 CTGGTCAGGGTCTTCATGAAGATTTGCATTTTG 52373 >seq248 Length=567972 Score = 95.1 bits (104), Expect = 1e-14 Identities = 160/232 (69%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || |||| || | ||| |||| |||| |||||||| || | || || || || | Sbjct 1456 CCACCTCTGAGACGGAGGACCAGGTGCAGGGTGGACTCTTTCTAGATATTGTAATCGGAG 1515 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 || || | || |||||||| ||||| ||| | || ||| ||| ||| || Sbjct 1516 AGAGTGCAATCATCTTCCAGCTGCTTGCCAGCAAAGATGAGTTGCTGATGGGGGGGTGGA 1575 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | ||| || ||||| |||||| ||||| | ||| || |||| ||||||| Sbjct 1576 ATGCCCTCTTTGTCCAGGATCTTCACCTTCACATTCTCGATGGTGTCACTGGGCTCCACC 1635 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATTTTGA 21180 |||| ||| |||||||||||||||| || || || || ||||||||||||| Sbjct 1636 TCCAGGGTGATGGTCTTGCCGGTTAGGGTCTTCACGAAGATTTGCATTTTGA 1687 >seq17328 Length=23406 Score = 82.4 bits (90), Expect = 6e-11 Identities = 102/140 (73%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 20952 CCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGG 21011 || ||||| | ||||||| | |||| ||||||| || || ||||| |||| | ||| Sbjct 1384 CCACGCAGACGAAGCACCAGGTACAAAATGGACTCTTTCTGGATGTTGTAGTAGGACAGA 1443 Query 21012 GTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACG 21071 || || | ||||| ||||| ||||| ||| | || ||||||||||||| | | | Sbjct 1444 GTCCGGCCATCCTCTAGCTGCTTGCCAGCAAATATCAGTCTCTGCTGGTGAGGTAGGATG 1503 Query 21072 CCTTCCTTGTCGGCGATCTT 21091 |||||||||| |||||| Sbjct 1504 GCTTCCTTGTCTTGGATCTT 1523 >seq187 Length=977573 Score = 82.4 bits (90), Expect = 6e-11 Identities = 89/118 (75%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 20965 GCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCT 21024 |||||| |||| ||||| || || || ||||| |||||| || || ||| | |||| Sbjct 637661 GCACCAGGAGCAAGGTGGAGTCTTTCTGGATGTTGTAGTCCAAAAGAGTGTGGCCATCCT 637720 Query 21025 CCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTC 21082 ||||||||||||| ||| | || || |||| |||||| || ||||||| ||||| Sbjct 637721 CCAGCTGTTTGCCGGCAAATATCAGCCTCTACTGGTCAGATGGGACGCCTTTGTTGTC 637778 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421958538649868