Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ellobius_20lutescens_20[genbank_20GCA_5F001685075.1_202016-07-14] 58,423 sequences; 2,353,188,398 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq3025 154 2e-32 seq2959 154 2e-32 seq137 152 5e-32 seq5338 134 1e-26 seq248 125 7e-24 seq4138 114 1e-20 seq22505 102 8e-17 seq5999 102 8e-17 seq3167 89.7 5e-13 seq3071 87.8 2e-12 seq8984 82.4 8e-11 >seq3025 Length=599017 Score = 154 bits (170), Expect = 2e-32 Identities = 173/229 (76%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748 |||||| || ||||| ||||| | || || || ||||||||| | || ||||| ||| Sbjct 118136 AATGCAGATCTTCGTGAAAACCTTAACTGGTAAGACCATCACCCTGGAGGTCGAGCCCAG 118077 Query 40749 CGACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACC 40807 ||||| | | | |||| |||||| || || | ||||| || ||||||||| | |||| Sbjct 118076 CGACACCATCGAGAACG-TCAAGGCCAAGATCCAGGACAAGGAAGGCATCCCCCCTGACC 118018 Query 40808 AGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 40867 |||| | || |||| || ||||| |||||||| || | |||||||| |||||||| Sbjct 118017 AGCAGAGGCTGATCTTTGCAGGCAAGCAGCTGGAGGATGGCCGCACCCTGTCCGACTACA 117958 Query 40868 ACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 |||||||||| ||| |||| ||||| || || ||||| | ||||| || Sbjct 117957 ACATCCAGAAAGAGTCCACCCTGCACCTGGTCCTGCGCCTCAGGGGTGG 117909 Score = 134 bits (148), Expect = 1e-26 Identities = 150/198 (76%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 40720 AAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCA-AACGCTCAAGGAAAAAAT 40778 || ||||||||| | || ||||| ||| ||||| | | | |||| |||||| || || Sbjct 115847 AAGACCATCACCCTGGAGGTCGAGCCCAGCGACACCATCGAGAACG-TCAAGGCCAAGAT 115789 Query 40779 TCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCT 40838 | ||||| || ||||||||| | |||||||| | || |||| || ||||| ||||| Sbjct 115788 CCAGGACAAGGAAGGCATCCCCCCTGACCAGCAGAGGCTGATCTTTGCAGGCAAGCAGCT 115729 Query 40839 GGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 ||| || | |||||||| |||||||||||||||||| ||| |||| ||||| || || Sbjct 115728 GGAGGATGGCCGCACCCTGTCCGACTACAACATCCAGAAAGAGTCCACCCTGCACCTGGT 115669 Query 40899 GTTGCGCTTGAGGGGCGG 40916 ||||| | ||||| || Sbjct 115668 CCTGCGCCTCAGGGGTGG 115651 >seq2959 Length=310600 Score = 154 bits (170), Expect = 2e-32 Identities = 175/232 (75%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 ||||||||||| ||||| || || | |||||||| ||||||||| | || ||||| || Sbjct 279846 AAAATGCAAATCTTCGTGAAGACCTTGACGGGCAAGACCATCACCCTGGAGGTCGAGCCC 279787 Query 40747 ACCGACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGA 40805 | |||| | | | |||| | |||| || || | || ||||||||||||||| | || Sbjct 279786 AGTGACACCATCGAGAACG-TGAAGGCCAAGATCCAGGATAAAGAGGGCATCCCCCCCGA 279728 Query 40806 CCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 40865 |||||| |||||||||| || ||||| |||||||| || | ||||| || || || Sbjct 279727 CCAGCAGCGACTCATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGATTA 279668 Query 40866 CAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 |||||||||||| ||| |||| ||||| || || | || | ||||| ||| Sbjct 279667 CAACATCCAGAAAGAGTCCACCCTGCACCTGGTCCTCCGTCTCAGGGGTGGC 279616 >seq137 Length=869495 Score = 152 bits (168), Expect = 5e-32 Identities = 174/231 (75%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 116576 GAGCCGCTGCTGCGCGAGAACCCCCGCCGGTTCGTGATTTTCCCCATACAATACCCGGAC 116635 ||||| | ||| | || || |||||||| |||||| |||| ||||| |||||| || Sbjct 369357 GAGCCCTTACTGAGAGAAAATCCCCGCCGCTTCGTGGTTTTTCCCATCGAATACCATGAT 369298 Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695 || |||| |||||||| || |||||||| || |||||||| | |||||||||||||| Sbjct 369297 ATCTGGCAGATGTACAAGAAAGCCGAGGCCTCCTTCTGGACGGCTGAGGAGGTGGACCTC 369238 Query 116696 TCCAAGGACACGAGCGACTGGG-AGCGCTTGAACGACAACGAGCGCCATTTCATCAAGCA 116754 |||||||| | |||||| ||||| |||| | ||||| | ||||| || || Sbjct 369237 TCCAAGGATATTCAACACTGGGAAGCGC-TGAAACCCGACGAGAGACATTTTATATCTCA 369179 Query 116755 CGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGT 116805 ||| ||||| || || || || || || ||||| ||||| || |||||||| Sbjct 369178 CGTCCTGGCTTTCTTTGCGGCGAGTGATGGCATAGTCAATGAAAATCTGGT 369128 Score = 84.2 bits (92), Expect = 2e-11 Identities = 93/124 (75%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 117044 GTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGG 117103 |||||||| || || || || || ||||||| || ||| ||| || | ||||| ||| Sbjct 366708 GTGGCCTTTGCTGCTGTAGAAGGGATCTTCTTCTCTGGCTCTTTTGCATCAATATTCTGG 366649 Query 117104 CTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGAC 117163 ||||||||||| || || ||||| ||||| || || ||||||||| || ||| || Sbjct 366648 CTCAAGAAACGGGGACTGATGCCTGGCCTTACATTTTCCAACGAGCTTATTAGCAGAGAT 366589 Query 117164 GAGG 117167 |||| Sbjct 366588 GAGG 366585 >seq5338 Length=92157 Score = 134 bits (148), Expect = 1e-26 Identities = 159/213 (75%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 ||||||||||| ||| | || || || || |||||||||||||| | || || | | Sbjct 52372 AAAATGCAAATCTTCATGAAGACCCTGACCAGCAAAACCATCACCCTGGAGGTGGCGCCG 52313 Query 40747 ACCGACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGA 40805 | |||| | | | |||| | |||| || || | || ||||||||||||||| | || Sbjct 52312 AGTGACACCATCGAGAACG-TGAAGGCCAAGATCCAGGATAAAGAGGGCATCCCCCCCGA 52254 Query 40806 CCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 40865 |||||| |||||||||| || ||||| |||||||| || | ||||| || || || Sbjct 52253 CCAGCAGCGACTCATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGATTA 52194 Query 40866 CAACATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 |||||||||||| ||| |||| ||||| || || Sbjct 52193 CAACATCCAGAAAGAGTCCACCCTGCACCTGGT 52161 >seq248 Length=567972 Score = 125 bits (138), Expect = 7e-24 Identities = 155/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 ||||||||||| ||||| || || || || ||||| ||||||||| | || || || || Sbjct 1685 AAAATGCAAATCTTCGTGAAGACCCTAACCGGCAAGACCATCACCCTGGAGGTGGAGCCC 1626 Query 40747 ACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGAC 40806 | |||| | | | | | |||| || || || |||||||||||||| || | | Sbjct 1625 AGTGACACCATCGAGAATGTGAAGGTGAAGATCCTGGACAAAGAGGGCATTCCACCCCCC 1566 Query 40807 CAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 40866 || || | |||||||| || ||||| |||||||| || || |||| ||| ||| ||| Sbjct 1565 CATCAGCAACTCATCTTTGCTGGCAAGCAGCTGGAAGATGATTGCACTCTCTCCGATTAC 1506 Query 40867 AACATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 || ||| |||| ||| |||| ||||| || || Sbjct 1505 AATATCTAGAAAGAGTCCACCCTGCACCTGGT 1474 >seq4138 Length=267950 Score = 114 bits (126), Expect = 1e-20 Identities = 223/329 (68%), Gaps = 3/329 (1%) Strand=Plus/Minus Query 117044 GTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGG 117103 |||||||| || || || || || ||||||| || ||| ||| || | ||||| ||| Sbjct 163017 GTGGCCTTTGCTGCTGTAGAAGGGATCTTCTTCTCTGGCTCTTTTGCATCAATATTCTGG 162958 Query 117104 CTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGAC 117163 ||||||||||| || || ||||| ||||| || || ||||||||| || ||| || Sbjct 162957 CTCAAGAAACGGGGACTGATGCCTGGCCTTACATTTTCCAACGAGCTTATTAGCAGAGAT 162898 Query 117164 GAGGGTCTGCATTGCGACTTTGCCTGTTTGCTGTTCAAGCATTTGGTGCAGCGACCGAGC 117223 |||||| | | || | ||||||||| || |||||| ||| |||| || ||| Sbjct 162897 GAGGGTTTACCCTGTGTCTTTGCCTGCCTGATGTTCAGGCACCTGGTACACAAGCCGTCG 162838 Query 117224 GCGGCGCGCGTCAGGGAGATCGTCACCGACGCGGTCGCCATCGAGCAGCGCTTCCTCACC 117283 | | | | || || ||| ||| || || | |||||| || ||||| Sbjct 162837 GAGCCAAGAGTACAAGAAATCATCA---GTGCAGTGAGGCTAGAGCAGGAGTTTCTCACG 162781 Query 117284 GAAGCGCTGCCGGTGCGTCTGCTGGGACTCAATTGCGAAACGATGTCGCAATACATCGAG 117343 || || ||||| ||| ||| | || | || ||| |||| ||| |||||||| Sbjct 162780 GAGGCCCTGCCTGTGAATCTCATCGGGATGAACTGCACCCTGATGAAGCAGTACATCGAA 162721 Query 117344 TTCGTCGCCGACAGGCTGCTGCTCGAGCT 117372 ||||| | |||||||| |||| ||||| Sbjct 162720 TTCGTGCCGGACAGGCTTATGCTGGAGCT 162692 >seq22505 Length=6242 Score = 102 bits (112), Expect = 8e-17 Identities = 161/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 || ||||| ||||| || || || || | |||||| |||||||| | || ||| | || Sbjct 3410 AACATGCAGATATTTGTGAAGACCCTGATGGGCAAGACCATCACTCTTGAGGTCTAGCCC 3351 Query 40747 ACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGAC 40806 | || | | | | | |||||| || || | ||||| || |||||||| | ||| Sbjct 3350 AGTGATACCATCAAGAATTTCAAGGCCAAGATCCAAGACAAGGAAGGCATCCCACCTGAC 3291 Query 40807 CAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 40866 || || | || || | || ||||| |||||||| || | || ||||| ||| ||| Sbjct 3290 CATCAGAGGCTGATATTTGCCGGCAAGCAGCTGGAGGATGGCCGGACCCTGTCCGATTAC 3231 Query 40867 AACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 ||||||||||| ||| |||| |||| || ||| | || || | || ||| Sbjct 3230 AACATCCAGAAAGAGTCCACTTTGCACCTGGTGCTTCGTCTGCGTGGAGGC 3180 >seq5999 Length=119422 Score = 102 bits (112), Expect = 8e-17 Identities = 161/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 || ||||| ||||| || || || || | |||||| |||||||| | || ||| | || Sbjct 2833 AACATGCAGATATTTGTGAAGACCCTGATGGGCAAGACCATCACTCTTGAGGTCTAGCCC 2892 Query 40747 ACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGAC 40806 | || | | | | | |||||| || || | ||||| || |||||||| | ||| Sbjct 2893 AGTGATACCATCAAGAATTTCAAGGCCAAGATCCAAGACAAGGAAGGCATCCCACCTGAC 2952 Query 40807 CAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 40866 || || | || || | || ||||| |||||||| || | || ||||| ||| ||| Sbjct 2953 CATCAGAGGCTGATATTTGCCGGCAAGCAGCTGGAGGATGGCCGGACCCTGTCCGATTAC 3012 Query 40867 AACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 ||||||||||| ||| |||| |||| || ||| | || || | || ||| Sbjct 3013 AACATCCAGAAAGAGTCCACTTTGCACCTGGTGCTTCGTCTGCGTGGAGGC 3063 >seq3167 Length=233518 Score = 89.7 bits (98), Expect = 5e-13 Identities = 94/124 (76%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 117042 TGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTT 117101 |||||||||| || ||||| || ||||| ||||| || || || || || || || | Sbjct 45078 TGGTGGCCTTTGCTGCCGTGGAAGGCGTTTTCTTCTCTGGGTCATTTGCTGCTATCTTCT 45137 Query 117102 GGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGG 117161 |||| ||||| | |||||||||||||| || |||||| ||||| || ||| ||||| Sbjct 45138 GGCTGAAGAAGAGAGGCCTCATGCCCGGACTCACTTTCTCAAACGAACTGATCAGCAGGG 45197 Query 117162 ACGA 117165 | || Sbjct 45198 ATGA 45201 >seq3071 Length=285302 Score = 87.8 bits (96), Expect = 2e-12 Identities = 147/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||| | || || || ||||| ||||||||||| | || || ||| || | Sbjct 253380 ATGCAGATTTTCATGAAGACCCTTACGGGGAAAACCATCACGCTTGAGGTAGAACCCTCA 253321 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | ||| |||||| || || | || || || || || || | || ||| Sbjct 253320 GACACTATAGAAAATGTCAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGATCAG 253261 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || |||| || ||||| |||||||| || | | || | ||||||||| Sbjct 253260 CAGAAGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGCCATACTTTGTCTGACTACAAC 253201 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTG 40902 ||||| |||||| ||| || ||||| |||||| Sbjct 253200 ATCCAAAAGGAGTCCATCCTTCATCTGGTGTTG 253168 >seq8984 Length=72256 Score = 82.4 bits (90), Expect = 8e-11 Identities = 86/113 (76%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 40783 GACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGAC 40842 ||||| || |||||||| | |||||||| | || || | || ||||| |||||||| Sbjct 54490 GACAAGGAAGGCATCCCACCTGACCAGCAGAGGCTGATATTTGCCGGCAAGCAGCTGGAG 54549 Query 40843 GACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCT 40895 || | || ||||| |||||||||||||||||| ||| |||| |||| || Sbjct 54550 GATGGCCGGACCCTGTCCGACTACAACATCCAGAAAGAGTCCACTTTGCACCT 54602 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 514842941858480