Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ellobius_20lutescens_20[genbank_20GCA_5F001685075.1_202016-07-14] 58,423 sequences; 2,353,188,398 total letters Query= NC_001987.1 Length=108409 Score E Sequences producing significant alignments: (Bits) Value seq11739 87.8 1e-12 >seq11739 Length=28935 Score = 87.8 bits (96), Expect = 1e-12 Identities = 191/281 (68%), Gaps = 4/281 (1%) Strand=Plus/Plus Query 97402 TATTCTGCTCCAAAATGCCTCCATTGGAATCCATAAACAGGTCCAAGGTCTCCTTCTTCT 97461 || |||||| ||||||| ||| | ||||| || ||||| || || | || ||||| | | Sbjct 18456 TAGTCTGCTACAAAATGTCTCTAATGGAAACCGTAAACTGGGCCCAACTCCCCTTCCTGT 18515 Query 97462 CTATCACAGAAACCAAGCTTATCTA-AATAGGACCTAGATCCATTTGCATCCCAAATGTG 97520 | || |||| || | | |||| |||| | | || ||||| |||||||| || Sbjct 18516 CGTGCAGAGAATCCCATGCTGTCTAGAATATGTCGG-GACCCATTGGCATCCCAGATTCT 18574 Query 97521 CACACCAGATGCTGCAAGCTCTTT-GCTGTCAGTAGATCCTCTGATAAACCACAACAATT 97579 ||| || | || || ||||| || || || ||||| |||||||||||| || | Sbjct 18575 CACTCCTTTGGAGGCCAGTTCTTTAGCAGTT-GTGGATCCCTTGATAAACCACAGCACCT 18633 Query 97580 CTTCCACAACACCTCTCCAAAATACTCTCTTAGTTGTTAAGAGAGGAAAATCCTTTTCTA 97639 | | || |||||| |||| || |||| || ||| | | |||||||| || | | | Sbjct 18634 CCTTCAAAACACCCTTCCAGAACACTCGTTTGGTTATGAGCAGAGGAAATTCATCTCTCA 18693 Query 97640 AGCTGTATCTAGACTGCATTCCAAAAACACTCAATGTTCCA 97680 | ||||| | |||||| || || || ||| || ||| Sbjct 18694 GGTTGTATGGCGCCTGCATGCCTAACACCGACAAGGTGCCA 18734 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 346537079280110