Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ellobius_20lutescens_20[genbank_20GCA_5F001685075.1_202016-07-14] 58,423 sequences; 2,353,188,398 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq2959 111 1e-19 seq1738 105 6e-18 seq5338 102 7e-17 seq22505 87.8 2e-12 seq5999 87.8 2e-12 >seq2959 Length=310600 Score = 111 bits (122), Expect = 1e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||| ||| | || |||||||| || ||||||||||| | |||||| ||| || Sbjct 279635 ACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCC 279694 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 ||||| || ||||| ||||||| |||||||| ||||| || |||||||| || || Sbjct 279695 AGCTGCTTGCCAGCAAAGATGAGTCGCTGCTGGTCGGGGGGGATGCCCTCTTTATCCTGG 279754 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || || || || | |||| |||||| || ||||||||| | ||| | || ||| Sbjct 279755 ATCTTGGCCTTCACGTTCTCGATGGTGTCACTGGGCTCGACCTCCAGGGTGATGGTCTTG 279814 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || |||| || || || || || ||||| Sbjct 279815 CCCGTCAAGGTCTTCACGAAGATTTGCAT 279843 >seq1738 Length=291085 Score = 105 bits (116), Expect = 6e-18 Identities = 150/211 (71%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 ||||| ||| | || ||||||||||| || ||||| || || || || |||||| Sbjct 20107 CACCAGGTGCAAAGTGGACTCTTTTTGGATATTGTAGACGGACAGGGTCCGGCCATCCTC 20048 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 ||||| || ||||| | || || | |||||| || || || ||||| ||||||||| Sbjct 20047 CAGCTGCTTGCCAGCAAATATCAGCCTCTGCTGGTCAGGTGGGATGCCTTCCTTGTCTTG 19988 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708 || || || || | |||| |||||| || ||||||||| | || | || || Sbjct 19987 GATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCGACCTCAAGAGTGATGGTCTT 19928 Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 ||| |||| || || ||||| ||||||||| Sbjct 19927 GCCCATCAGGGTCTTCACAAAGATCTGCATG 19897 >seq5338 Length=92157 Score = 102 bits (112), Expect = 7e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||| ||| | || |||||||| || ||||||||||| | |||||| ||| || Sbjct 52161 ACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCC 52220 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 ||||| || ||||| ||||||| |||||||| ||||| || |||||||| || || Sbjct 52221 AGCTGCTTGCCAGCAAAGATGAGTCGCTGCTGGTCGGGGGGGATGCCCTCTTTATCCTGG 52280 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || || || || | |||| |||||| | | | ||||| | ||| | |||||| Sbjct 52281 ATCTTGGCCTTCACGTTCTCGATGGTGTCACTCGGCGCCACCTCCAGGGTGATGGTTTTG 52340 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 | |||||| || || | || || ||||| Sbjct 52341 CTGGTCAGGGTCTTCATGAAGATTTGCAT 52369 >seq22505 Length=6242 Score = 87.8 bits (96), Expect = 2e-12 Identities = 146/211 (69%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 ||||| ||| | || |||||||| || |||||||||||| || || || |||||| Sbjct 3198 CACCAGGTGCAAAGTGGACTCTTTCTGGATGTTGTAATCGGACAGGGTCCGGCCATCCTC 3257 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 ||||| || || || | || || | ||| || || || || ||||| ||||||||| Sbjct 3258 CAGCTGCTTGCCGGCAAATATCAGCCTCTGATGGTCAGGTGGGATGCCTTCCTTGTCTTG 3317 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708 || || || | | | || ||| || || || |||||| | || | || || Sbjct 3318 GATCTTGGCCTTGAAATTCTTGATGGTATCACTGGGCTAGACCTCAAGAGTGATGGTCTT 3377 Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 ||| |||| || || ||||| ||||||||| Sbjct 3378 GCCCATCAGGGTCTTCACAAATATCTGCATG 3408 >seq5999 Length=119422 Score = 87.8 bits (96), Expect = 2e-12 Identities = 146/211 (69%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 ||||| ||| | || |||||||| || |||||||||||| || || || |||||| Sbjct 3045 CACCAGGTGCAAAGTGGACTCTTTCTGGATGTTGTAATCGGACAGGGTCCGGCCATCCTC 2986 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 ||||| || || || | || || | ||| || || || || ||||| ||||||||| Sbjct 2985 CAGCTGCTTGCCGGCAAATATCAGCCTCTGATGGTCAGGTGGGATGCCTTCCTTGTCTTG 2926 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708 || || || | | | || ||| || || || |||||| | || | || || Sbjct 2925 GATCTTGGCCTTGAAATTCTTGATGGTATCACTGGGCTAGACCTCAAGAGTGATGGTCTT 2866 Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 ||| |||| || || ||||| ||||||||| Sbjct 2865 GCCCATCAGGGTCTTCACAAATATCTGCATG 2835 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433521499604716