Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ellobius_20lutescens_20[genbank_20GCA_5F001685075.1_202016-07-14] 58,423 sequences; 2,353,188,398 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq2959 123 3e-23 seq248 123 3e-23 seq5338 122 1e-22 seq5675 102 9e-17 seq3025 102 9e-17 seq6255 100 3e-16 seq2940 100 3e-16 seq861 98.7 1e-15 seq3120 93.3 5e-14 seq412 91.5 2e-13 >seq2959 Length=310600 Score = 123 bits (136), Expect = 3e-23 Identities = 167/233 (72%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 || || || | ||| | |||| |||| ||| ||| || || || |||||||||| Sbjct 279617 CCACCCCTGAGACGGAGGACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAATCAGAA 279676 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 ||||| || | || || |||||||| ||||| || ||||||||||||||||||| || Sbjct 279677 AGAGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATGAGTCGCTGCTGGTCGGGGGGG 279736 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 43136 | || ||| || ||| ||| || || | || | | ||||| || | || || Sbjct 279737 ATGCCCTCTTTATCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCACTGGGCTCGACC 279796 Query 43137 TCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTTTAC 43189 || | |||||||| |||||||| | ||||| || |||||||||||||| || Sbjct 279797 TCCAGGGTGATGGTCTTGCCCGTCAAGGTCTTCACGAAGATTTGCATTTTGAC 279849 >seq248 Length=567972 Score = 123 bits (136), Expect = 3e-23 Identities = 167/233 (72%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 || ||||| | ||| | |||| |||| ||| ||| || | ||||||||||| | Sbjct 1456 CCACCTCTGAGACGGAGGACCAGGTGCAGGGTGGACTCTTTCTAGATATTGTAATCGGAG 1515 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 ||||| | || || || |||||||| ||||| || |||||| |||| ||| || || Sbjct 1516 AGAGTGCAATCATCTTCCAGCTGCTTGCCAGCAAAGATGAGTTGCTGATGGGGGGGTGGA 1575 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 43136 | || ||| ||||||| ||| || || | || | | ||||| || | ||||| Sbjct 1576 ATGCCCTCTTTGTCCAGGATCTTCACCTTCACATTCTCGATGGTGTCACTGGGCTCCACC 1635 Query 43137 TCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTTTAC 43189 || | |||||||| ||||| ||||| ||||| || |||||||||||||| || Sbjct 1636 TCCAGGGTGATGGTCTTGCCGGTTAGGGTCTTCACGAAGATTTGCATTTTGAC 1688 >seq5338 Length=92157 Score = 122 bits (134), Expect = 1e-22 Identities = 154/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 42975 ACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCT 43034 |||| |||| ||| ||| || || || |||||||||| ||||| || | || || Sbjct 52161 ACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCC 52220 Query 43035 AGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 43094 |||||||| ||||| || ||||||||||||||||||| || | || ||| || ||| | Sbjct 52221 AGCTGCTTGCCAGCAAAGATGAGTCGCTGCTGGTCGGGGGGGATGCCCTCTTTATCCTGG 52280 Query 43095 ATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTG 43154 || || || | || | | ||||| |||| |||| || | |||||||||||| Sbjct 52281 ATCTTGGCCTTCACGTTCTCGATGGTGTCACTCGGCGCCACCTCCAGGGTGATGGTTTTG 52340 Query 43155 CCCGTTAGCGTCTTTACAAAGATTTGCATTTT 43186 | || || ||||| | |||||||||||||| Sbjct 52341 CTGGTCAGGGTCTTCATGAAGATTTGCATTTT 52372 >seq5675 Length=152738 Score = 102 bits (112), Expect = 9e-17 Identities = 67/74 (91%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 60064 TTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCAC 60123 |||||| || | ||||||||||||| ||||||||||||||||||||| ||||||||||| Sbjct 46064 TTCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCAC 46005 Query 60124 TATACTACCGAGGA 60137 ||||||| |||||| Sbjct 46004 TATACTAACGAGGA 45991 >seq3025 Length=599017 Score = 102 bits (112), Expect = 9e-17 Identities = 67/74 (91%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 ||||| || | ||||||||||||| ||||||||||||||||||||| |||||||||||| Sbjct 134232 TCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACT 134291 Query 60125 ATACTACCGAGGAT 60138 |||||| ||||||| Sbjct 134292 ATACTAACGAGGAT 134305 Score = 100 bits (110), Expect = 3e-16 Identities = 66/73 (90%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 ||||| || | ||||||||||||| ||||||||||||||||||||| |||||||||||| Sbjct 131735 TCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACT 131794 Query 60125 ATACTACCGAGGA 60137 |||||| |||||| Sbjct 131795 ATACTAACGAGGA 131807 >seq6255 Length=77292 Score = 100 bits (110), Expect = 3e-16 Identities = 66/73 (90%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 ||||| || | ||||||||||||| ||||||||||||||||||||| |||||||||||| Sbjct 19382 TCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACT 19323 Query 60125 ATACTACCGAGGA 60137 |||||| |||||| Sbjct 19322 ATACTAACGAGGA 19310 >seq2940 Length=212193 Score = 100 bits (110), Expect = 3e-16 Identities = 66/73 (90%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 ||||| || | ||||||||||||| ||||||||||||||||||||| |||||||||||| Sbjct 159897 TCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACT 159956 Query 60125 ATACTACCGAGGA 60137 |||||| |||||| Sbjct 159957 ATACTAACGAGGA 159969 Score = 98.7 bits (108), Expect = 1e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 128258 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 128199 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 128198 TACTAACGAGGA 128187 Score = 95.1 bits (104), Expect = 1e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 ||||| | | ||||||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 154450 CTCCTTGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 154509 Query 60126 TACTACCGAGGA 60137 ||||| | |||| Sbjct 154510 TACTAACAAGGA 154521 >seq861 Length=573511 Score = 98.7 bits (108), Expect = 1e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 354880 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 354939 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 354940 TACTAACGAGGA 354951 >seq3120 Length=319906 Score = 93.3 bits (102), Expect = 5e-14 Identities = 65/74 (88%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 ||||| || | ||||||||||| | || |||||||||||||||||| |||||||||||| Sbjct 136029 TCTCCCCGTCGGGGAATCGAACACCGGCCTCCCGCGTGACAGGCGGGGATACTCACCACT 135970 Query 60125 ATACTACCGAGGAT 60138 |||||| ||||||| Sbjct 135969 ATACTAACGAGGAT 135956 >seq412 Length=495752 Score = 91.5 bits (100), Expect = 2e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 ||||| || | |||||| |||||| ||||||||||||||||||||| ||||| |||||| Sbjct 97265 TCTCCCCGTCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACT 97324 Query 60125 ATACTACCGAGGA 60137 |||||| |||||| Sbjct 97325 ATACTAACGAGGA 97337 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571400008754440