Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ellobius_20lutescens_20[genbank_20GCA_5F001685075.1_202016-07-14] 58,423 sequences; 2,353,188,398 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq3025 118 7e-22 seq1738 109 4e-19 seq22505 107 1e-18 seq5999 107 1e-18 seq2959 95.1 8e-15 seq5338 93.3 3e-14 seq8984 84.2 1e-11 >seq3025 Length=599017 Score = 118 bits (130), Expect = 7e-22 Identities = 154/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 34177 CAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTC 34236 ||| |||||||| | || |||||||| ||||||||||||||||| ||| | || Sbjct 117923 CAGGACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATC 117982 Query 34237 GTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTC 34296 |||| |||||||||||| || || |||| ||||||||| ||| | || |||||||| Sbjct 117983 CTCCAGCTGCTTGCCTGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCTTCCTTGTC 118042 Query 34297 GGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGT 34356 ||||| ||| | | | || | ||| | | ||||| |||| |||||||| Sbjct 118043 CTGGATCTTGGCCTTGACGTTCTCGATGGTGTCGCTGGGCTCGACCTCCAGGGTGATGGT 118102 Query 34357 TTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || || || | |||||||| ||||||||||| Sbjct 118103 CTTACCAGTTAAGGTTTTCACGAAGATCTGCAT 118135 Score = 91.5 bits (100), Expect = 1e-13 Identities = 130/183 (71%), Gaps = 0/183 (0%) Strand=Plus/Plus Query 34177 CAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTC 34236 ||| |||||||| | || |||||||| ||||||||||||||||| ||| | || Sbjct 115665 CAGGACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATC 115724 Query 34237 GTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTC 34296 |||| |||||||||||| || || |||| ||||||||| ||| | || |||||||| Sbjct 115725 CTCCAGCTGCTTGCCTGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCTTCCTTGTC 115784 Query 34297 GGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGT 34356 ||||| ||| | | | || | ||| | | ||||| |||| |||||||| Sbjct 115785 CTGGATCTTGGCCTTGACGTTCTCGATGGTGTCGCTGGGCTCGACCTCCAGGGTGATGGT 115844 Query 34357 TTT 34359 || Sbjct 115845 CTT 115847 >seq1738 Length=291085 Score = 109 bits (120), Expect = 4e-19 Identities = 156/220 (71%), Gaps = 0/220 (0%) Strand=Plus/Minus Query 34170 GCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGAC 34229 |||| | ||||||||||| ||||| ||||| || || |||||| ||||||| | Sbjct 20117 GCAGGCGAAGCACCAGGTGCAAAGTGGACTCTTTTTGGATATTGTAGACGGACAGGGTCC 20058 Query 34230 GGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCT 34289 || | || |||| ||||||||| || || || |||| ||||||||| || | || | Sbjct 20057 GGCCATCCTCCAGCTGCTTGCCAGCAAATATCAGCCTCTGCTGGTCAGGTGGGATGCCTT 19998 Query 34290 CCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCG 34349 ||||||| ||||| ||| | || | || | || | | ||||| || | | Sbjct 19997 CCTTGTCTTGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCGACCTCAAGAG 19938 Query 34350 TGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 ||||||| ||||| | || || ||||||||||||||||| Sbjct 19937 TGATGGTCTTGCCCATCAGGGTCTTCACAAAGATCTGCAT 19898 >seq22505 Length=6242 Score = 107 bits (118), Expect = 1e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || ||||| | ||||||||||| ||||| |||||||| |||||||| |||||| Sbjct 3181 CCTCCACGCAGACGAAGCACCAGGTGCAAAGTGGACTCTTTCTGGATGTTGTAATCGGAC 3240 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || ||| | || |||| ||||||||| || || || |||| ||| ||||| || Sbjct 3241 AGGGTCCGGCCATCCTCCAGCTGCTTGCCGGCAAATATCAGCCTCTGATGGTCAGGTGGG 3300 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | || |||||||| ||||| ||| | || || | ||| | | | ||| Sbjct 3301 ATGCCTTCCTTGTCTTGGATCTTGGCCTTGAAATTCTTGATGGTATCACTGGGCTAGACC 3360 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || | |||||||| ||||| | || || |||||||| |||||||| Sbjct 3361 TCAAGAGTGATGGTCTTGCCCATCAGGGTCTTCACAAATATCTGCAT 3407 >seq5999 Length=119422 Score = 107 bits (118), Expect = 1e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || ||||| | ||||||||||| ||||| |||||||| |||||||| |||||| Sbjct 3062 CCTCCACGCAGACGAAGCACCAGGTGCAAAGTGGACTCTTTCTGGATGTTGTAATCGGAC 3003 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || ||| | || |||| ||||||||| || || || |||| ||| ||||| || Sbjct 3002 AGGGTCCGGCCATCCTCCAGCTGCTTGCCGGCAAATATCAGCCTCTGATGGTCAGGTGGG 2943 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | || |||||||| ||||| ||| | || || | ||| | | | ||| Sbjct 2942 ATGCCTTCCTTGTCTTGGATCTTGGCCTTGAAATTCTTGATGGTATCACTGGGCTAGACC 2883 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || | |||||||| ||||| | || || |||||||| |||||||| Sbjct 2882 TCAAGAGTGATGGTCTTGCCCATCAGGGTCTTCACAAATATCTGCAT 2836 >seq2959 Length=310600 Score = 95.1 bits (104), Expect = 8e-15 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 || |||||||| | || |||||||| |||||||| || || || ||| | || Sbjct 279632 AGGACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCT 279691 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 |||| ||||||||| || || ||||| |||||||||||| ||| | || ||| || || Sbjct 279692 TCCAGCTGCTTGCCAGCAAAGATGAGTCGCTGCTGGTCGGGGGGGATGCCCTCTTTATCC 279751 Query 34298 GCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTT 34357 ||||| ||| | | | || | || | | ||||| |||| |||||||| Sbjct 279752 TGGATCTTGGCCTTCACGTTCTCGATGGTGTCACTGGGCTCGACCTCCAGGGTGATGGTC 279811 Query 34358 TTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 ||||| || | || ||||| ||||| ||||| Sbjct 279812 TTGCCCGTCAAGGTCTTCACGAAGATTTGCAT 279843 >seq5338 Length=92157 Score = 93.3 bits (102), Expect = 3e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 34181 ACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCC 34240 |||||||| | || |||||||| |||||||| || || || ||| | || ||| Sbjct 52161 ACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCC 52220 Query 34241 AACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCT 34300 | ||||||||| || || ||||| |||||||||||| ||| | || ||| || || Sbjct 52221 AGCTGCTTGCCAGCAAAGATGAGTCGCTGCTGGTCGGGGGGGATGCCCTCTTTATCCTGG 52280 Query 34301 ATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTG 34360 ||||| ||| | | | || | || ||| | || |||| |||||||||||| Sbjct 52281 ATCTTGGCCTTCACGTTCTCGATGGTGTCACTCGGCGCCACCTCCAGGGTGATGGTTTTG 52340 Query 34361 CCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 | ||| || || |||| ||||| ||||| Sbjct 52341 CTGGTCAGGGTCTTCATGAAGATTTGCAT 52369 >seq8984 Length=72256 Score = 84.2 bits (92), Expect = 1e-11 Identities = 87/114 (76%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 34183 CAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAA 34242 |||||| ||||| |||||||| ||||||||||||||||| ||| | || |||| Sbjct 54603 CAGGTGCAAAGTGGACTCTTTCTGGATGTTGTAGTCGGACAGGGTCCGGCCATCCTCCAG 54544 Query 34243 CTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTC 34296 ||||||||| || || || |||| ||||||||| || | || |||||||| Sbjct 54543 CTGCTTGCCGGCAAATATCAGCCTCTGCTGGTCAGGTGGGATGCCTTCCTTGTC 54490 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 322841962942880