Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ellobius_20lutescens_20[genbank_20GCA_5F001685075.1_202016-07-14] 58,423 sequences; 2,353,188,398 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq4138 176 4e-39 seq3167 100 3e-16 seq137 98.7 9e-16 >seq4138 Length=267950 Score = 176 bits (194), Expect = 4e-39 Identities = 324/473 (68%), Gaps = 13/473 (3%) Strand=Plus/Plus Query 15925 ATTTGACATAACTGACATTTTTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTT 15984 ||||||||| || ||| | ||||| || | |||| ||| |||||||| ||||| || Sbjct 162565 ATTTGACATCACCTCCATCCTCTGATACTCGCCCACTCGCTTCTCAAAGAAGTTTGTCTT 162624 Query 15985 TCCTTCTAATGAAATATTTTCCATAAAATCAAAAGGATTTT-----TTGAACAATAGTAT 16039 ||||||||||||||||||||||| | ||||| ||||||| ||||| | | | Sbjct 162625 CCCTTCTAATGAAATATTTTCCATGAGGTCAAACGGATTTTCTACTTTGAAAA----TCT 162680 Query 16040 TTATCGCATCCCAATTCCAACAATAATCTATCCGCCACAAATTCTATATACTGTTTCATT 16099 | | | | || | |||| || | || |||| ||| ||||| || ||||| ||||| Sbjct 162681 TGCT-GAACCCTAGCTCCAGCATAAGCCTGTCCGGCACGAATTCGATGTACTGCTTCATC 162739 Query 16100 AAATCACAGTTCATTCCTATTAATTTAACAGGGATTGCTTCTGTTAAAAAAtttttttCT 16159 | |||||||| || || | || ||||| | || || || | ||| | | ||| Sbjct 162740 AGGGTGCAGTTCATCCCGATGAGATTCACAGGCAGGGCCTCCGTGAGAAACTCCTGCTCT 162799 Query 16160 ATATTAACCGCTTCAATGATTATATCTCTTACTACACTATTTAACGGAGGGTTTAATAAG 16219 | | || || | |||| || ||| |||| | |||| || || | | Sbjct 162800 AGCCTCACTGC---ACTGATGATTTCTTGTACTCTTGGCTCCGACGGCTTGTGTACCAGG 162856 Query 16220 TGTTTAAACATTATACAAGCAAAATCACAATGCAATCCTTCGTCCCTACTTATTAACTCG 16279 || | ||||| | || ||||| |||| | || || || || || || || | |||| Sbjct 162857 TGCCTGAACATCAGGCAGGCAAAGACACAGGGTAAACCCTCATCTCTGCTAATAAGCTCG 162916 Query 16280 TTTGAAAATGTAAGACCTGGCATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAAT 16339 || ||||||||||| || ||||| ||||| ||||| || | ||| ||||| | ||||| Sbjct 162917 TTGGAAAATGTAAGGCCAGGCATCAGTCCCCGTTTCTTGAGCCAGAATATTGATGCAAAA 162976 Query 16340 GAACCAGAAAAGAATATACCTTCAACTGCGGCAAATGCAACCAATCGCTCACC 16392 || ||||| ||||| || ||||| || || ||||| || || | ||| || || Sbjct 162977 GAGCCAGAGAAGAAGATCCCTTCTACAGCAGCAAAGGCCACAACTCGTTCTCC 163029 >seq3167 Length=233518 Score = 100 bits (110), Expect = 3e-16 Identities = 72/83 (87%), Gaps = 0/83 (0%) Strand=Plus/Minus Query 15946 TTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATTTTC 16005 ||| |||||| ||||| ||| ||||||||||||||||| ||||| || ||||| ||||| Sbjct 51900 TTGGTATTCAGAAACTCGCTTCTCAAAGAAATTTGTTTTCCCTTCCAACGAAATGTTTTC 51841 Query 16006 CATAAAATCAAAAGGATTTTTTG 16028 |||||||||||| ||||||| || Sbjct 51840 CATAAAATCAAAGGGATTTTCTG 51818 >seq137 Length=869495 Score = 98.7 bits (108), Expect = 9e-16 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 16259 TCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGACCTGGCATTAGTCCTCGTTTTTTA 16318 || || || || || | |||||| ||||||||||| || ||||| ||||| ||||| || Sbjct 366587 TCATCTCTGCTAATAAGCTCGTTGGAAAATGTAAGGCCAGGCATCAGTCCCCGTTTCTTG 366646 Query 16319 ATCCAAAATATAGCGGCAAATGAACCAGAAAAGAATATACCTTCAACTGCGGCAAATGCA 16378 | ||| ||||| | ||||| || ||||| ||||| || ||||| || || ||||| || Sbjct 366647 AGCCAGAATATTGATGCAAAAGAGCCAGAGAAGAAGATCCCTTCTACAGCAGCAAAGGCC 366706 Query 16379 ACCAATCGCTCACC 16392 || | ||| || || Sbjct 366707 ACAACTCGTTCTCC 366720 Score = 96.9 bits (106), Expect = 3e-15 Identities = 89/113 (79%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 15913 ATTATCTTTTTTATTTGACATAACTGACATTTTTTGATATTCACTAACTCTCTTTTCAAA 15972 ||| ||| || ||||||||| || ||| | ||||| || | |||| ||| ||||| Sbjct 364711 ATTCTCTGTTGAATTTGACATCACCCCCATCCTCTGATACTCGCCCACTCGCTTCTCAAA 364770 Query 15973 GAAATTTGTTTTTCCTTCTAATGAAATATTTTCCATAAAATCAAAAGGATTTT 16025 ||| ||||| || ||||||| ||||||||||||||| || ||||| ||||||| Sbjct 364771 GAAGTTTGTCTTCCCTTCTAGTGAAATATTTTCCATGAAGTCAAACGGATTTT 364823 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462174233267800