Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ellobius_20lutescens_20[genbank_20GCA_5F001685075.1_202016-07-14] 58,423 sequences; 2,353,188,398 total letters Query= NC_002665.1 Length=108873 Score E Sequences producing significant alignments: (Bits) Value seq3937 1160 0.0 seq5147 127 1e-24 seq26410 109 4e-19 seq26392 109 4e-19 seq710 91.5 1e-13 >seq3937 Length=511643 Score = 1160 bits (1286), Expect = 0.0 Identities = 1043/1306 (80%), Gaps = 10/1306 (1%) Strand=Plus/Plus Query 107336 GAAGCTTTGCCGGGGACATCATCTGTGGGCCCTGGGCTGCTATATGCTGCTGGCCGTTGT 107395 |||||| || || | ||||| ||||| ||||||||||||| |||||||||||||| | Sbjct 378073 GAAGCTCTGTTGGCGCTATCATGTGTGGACCCTGGGCTGCTACATGCTGCTGGCCGTCAT 378132 Query 107396 TTCTCTGAGACTTTCCCTCAGGTTTAAATGTGATGTAGATTCCTTGGATCTGGAGTCCAG 107455 | |||||| ||| |||||||| | || ||||| | ||| |||||||| | || | Sbjct 378133 TGCTCTGAAACTGTCCCTCAGACTGAAGTGTGACTTTGATGTTGTGGATCTGAACTCGAA 378192 Query 107456 GGACTTCCAGAGTCAGCACTGTAGGGACATGTTGTACAATAGCCTGAAGCTGCCAGCAAA 107515 ||| || || || |||||||| ||||| | ||||||| | ||||||||||||||||| Sbjct 378193 GGAATTTCAAAGCCAGCACTGCAGGGATTTCCTGTACAAGACCCTGAAGCTGCCAGCAAG 378252 Query 107516 GAGATCCATCAACTGTTCTGGGATCACGCGAGGGGACCAGGAAGCAGTGGTCCAGGCCCT 107575 ||| ||||||||||||| ||| |||| |||||||| ||| |||||||| ||||||| || Sbjct 378253 GAGGCCCATCAACTGTTCCGGGGTCACTCGAGGGGAGCAGAAAGCAGTGATCCAGGCTCT 378312 Query 107576 CCTAGACAACCTGGAAGTGAAGAAAAAGCGGTCGCCTCTCACTGGCACCTATTACCTCAA 107635 || | |||||||| | ||||| |||||| ||| |||| | || | ||||| | Sbjct 378313 GCTGAATAACCTGGAGATTAAGAAGAAGCGGCAGCCCTTCACAGAGGCCGACTACCTTAG 378372 Query 107636 CATAACCAGAGACTGTGAGCGCTTCAAGGCCCAAAGGAAGTTCATACAGTTCCCACTGAG 107695 ||| || ||||||||||| |||||| || |||||||||||||||||||| | ||||| Sbjct 378373 CATGACAGCAGACTGTGAGCAATTCAAGACCAAAAGGAAGTTCATACAGTTCTCGCTGAG 378432 Query 107696 TAAAGAAGAGCTAGACTTCCCCATTGCCTACTCGATGGTGGTCCATGAGAAGATTGAAAA 107755 |||||||||| |||||||||||||| || || |||||||| ||||||||||| || || Sbjct 378433 TAAAGAAGAGGCCGACTTCCCCATTGCGTATTCCATGGTGGTTCATGAGAAGATCGAGAA 378492 Query 107756 CTTTGAACGGCTGCTGCGAGCCGTGTATGCCCCTCAGAACATATACTGTGTCCACGTGGA 107815 ||||||| |||||||||| || ||||| ||||||| ||||||||||||||||||||||| Sbjct 378493 CTTTGAAAGGCTGCTGCGCGCTGTGTACACCCCTCAAAACATATACTGTGTCCACGTGGA 378552 Query 107816 TGTGAAGTCCCCAGAGACTTTCAAAGAGGCGGTCAAGGCCATTATTTCCTGCTTCCCCAA 107875 | |||||||||||| |||||||| |||| |||| ||||||| | || |||||||| || Sbjct 378553 TCAGAAGTCCCCAGAAACTTTCAAGCAGGCAGTCAGGGCCATTGTGTCATGCTTCCCAAA 378612 Query 107876 TGTCTTCATGGCCAGTAAGTTGGTCCCGGTGGTTTATGCCTCCTGGTCCAGAGTGCAAGC 107935 |||||| || || |||||| |||| | ||||| || || ||||||||||| ||||| || Sbjct 378613 TGTCTTTATAGCTAGTAAGCTGGTGTCAGTGGTCTACGCTTCCTGGTCCAGGGTGCAGGC 378672 Query 107936 TGACCTGAACTGTATGGAAGACTTGCTCCAGAGCTCAGTGCCATGGAAGTACTTACTGAA 107995 |||||||||||| ||||||||||| ||||||||||| ||||||||||| ||| | ||||| Sbjct 378673 TGACCTGAACTGCATGGAAGACTTACTCCAGAGCTCCGTGCCATGGAAATACCTCCTGAA 378732 Query 107996 TACATGCGGGACAGACTTCCCCATAAAGACCAATGCCGAGATGGTCCTGGCCCTCAAGAT 108055 || || ||||||||||| ||||| ||||||||||| |||||||||| |||||||| | Sbjct 378733 CACCTGTGGGACAGACTTTCCCATCAAGACCAATGCTGAGATGGTCCATTCCCTCAAGCT 378792 Query 108056 GTTGAAGGGTAAGAACAGTATGGAGTCTGAGGTACCTTCTGAGTCCaaaaaaaa----TC 108111 |||| || |||||||||||||||| |||||||| | ||| | |||| | Sbjct 378793 ACTGAATGGGCAGAACAGTATGGAGTCAGAGGTACCACC----CCCACATAAAAGGTCCC 378848 Query 108112 GCTGGAAATACCGCTATGAGGTGACAGACACACTGTACCCTACCAGCAAGATGAAGGACC 108171 |||||||||| | ||||||||||| ||||||| ||||| |||||||||| ||| || Sbjct 378849 GCTGGAAATATCACTATGAGGTGAAAGACACATTGTACAGGACCAGCAAGAGAAAGACCC 378908 Query 108172 CTCCCCCTGATAATTTACCCATGTTCACAGGGAATGCCTATTTTGTGGCCTCTCGAGCCT 108231 |||| ||| |||| || ||||||| || ||||||||||| | ||||| ||||||| || Sbjct 378909 CTCCGCCTAATAACATAACCATGTTTACTGGGAATGCCTACATGGTGGCTTCTCGAGACT 378968 Query 108232 TTGTCCAACATGTCTTAGACAACCCTAAATCCCAAAGACTGGTTGAATGGGTCAAAGACA 108291 | | ||||||| ||| |||| | ||| ||||| ||| | ||||||| ||||||| Sbjct 378969 TCATTGAACATGTATTAAACAATGCCAAAGCCCAACAACTAATCGAATGGGCAAAAGACA 379028 Query 108292 CCTATAGCCCCGACGAACACCTCTGGGCCACCCTTCAGCGTGCTCCGTGGATGCCTGGCT 108351 |||| || || || |||||||| ||||||||||| |||||||| | ||||||||||| | Sbjct 379029 CCTACAGTCCTGATGAACACCTTTGGGCCACCCTCCAGCGTGCCTCCTGGATGCCTGGAT 379088 Query 108352 CTGTTCCTAGCCACCCCAAGTATCACATCTCAGACATGACTGCCATCGCCAGGCTCGTCA 108411 | | ||| |||||||| | | || |||||||||||| || || || ||||| || Sbjct 379089 CAGCTCCCTTGCACCCCAAATTTGACCTCTCAGACATGAGAGCTATTGCAAGGCTAACCA 379148 Query 108412 AGTGGCAGTACCACGAGGGAGATGTC-AGCATGGGGGCGCCTTATGCACCCTGCTCTGGA 108470 |||||||| |||| |||||||| || || || ||||||||||| |||| || || ||| Sbjct 379149 AGTGGCAGGACCATGAGGGAGACATCGAGGAT-GGGGCGCCTTACACACCTTGTTCAGGA 379207 Query 108471 ATCCATCGGAGGGCCATCTGCATTTACGGGGCCGGGGACCTGTACTGGATTCTCCAGAAC 108530 |||| | | |||| |||| ||||| ||| | ||||||||| ||||||| || |||||| Sbjct 379208 GTCCACCAGCGGGCTGTCTGTATTTATGGGTCTGGGGACCTGCACTGGATACTTCAGAAC 379267 Query 108531 CATCACCTCTTGGCAAACAAGTTTGACCCGAGGGTGGATGATAACGTCCTGCAGTGCTTA 108590 |||||||||||||| |||||||||||||| | |||||||||||| || || ||||| ||| Sbjct 379268 CATCACCTCTTGGCCAACAAGTTTGACCCAAAGGTGGATGATAATGTTCTTCAGTGTTTA 379327 Query 108591 GAAGAGTACCTACGTCATAAGGCCATCTATGGGACTGAACTTTGAG 108636 || || || |||| || || |||||||| ||||||||||| |||| Sbjct 379328 GAGGAATATTTACGCCACAAAGCCATCTACGGGACTGAACTGTGAG 379373 >seq5147 Length=163313 Score = 127 bits (140), Expect = 1e-24 Identities = 244/356 (69%), Gaps = 4/356 (1%) Strand=Plus/Minus Query 107688 CCACTGAGTAAAGAAGAGCTAGACTTCCCCATTGCCTACTCGATGGTGGTCCATGAGAAG 107747 || || |||||||| ||| ||||||| |||||||| || || || ||||| ||| | ||| Sbjct 92665 CCCCTTAGTAAAGAGGAGGTAGACTTTCCCATTGCGTATTCCATAGTGGTTCATCACAAG 92606 Query 107748 ATTGAAAACTTTGAACGGCTGCTGCGAGCCGTGTATGCCCCTCAGAACATATACTGTGTC 107807 ||||||| |||| |||| ||| | ||| | ||| |||||||| | || || | Sbjct 92605 ATTGAAATGCTTGAGAGGCTCCTGAGGGCCATCTATATGCCTCAGAATTTCTATTGCATT 92546 Query 107808 CACGTGGATGTGAAGTCCCCAGAGACTTTCAAAGAGGCGGTCAAGGCCATTATTTCCTGC 107867 |||||||| || | ||| | || || ||||| | || |||| || ||| Sbjct 92545 CACGTGGACAAAAAAGCAGAGGAGCCCTTTTTAGCCGCGGTGATGGGCATTGCGTCTTGC 92486 Query 107868 TTCCCCAATGTCTTCATGGCCAGTAAGTTGGTCCCGGTGGTTTATGCCTCCTGGTCCAGA 107927 || || ||||| ||||||| || ||| || |||||||| |||||| | Sbjct 92485 TTGAAGAACGTCTTTGTGGCCAGCCAGCTGGAGAACGTCGTTTATGCGTCCTGGAGTCGG 92426 Query 107928 GTGCAAGCTGACCTGAACTGTATGGAAGACTTGCTCCAGAGCTCAGTGCCA--TGGAAGT 107985 || || |||||||| ||||| ||| | ||| || | ||| | ||||| | ||||||| Sbjct 92425 GTTCAGGCTGACCTCAACTGCATGAAGGACCTG-TACAGCA-TGAGTGCAAACTGGAAGT 92368 Query 107986 ACTTACTGAATACATGCGGGACAGACTTCCCCATAAAGACCAATGCCGAGATGGTC 108041 |||| | || ||||| | |||||||| || || ||||| || |||||| Sbjct 92367 ACTTGATCAACCTTTGCGGTATGGACTTCCCTATTAAAACCAACCTGGAAATGGTC 92312 Score = 114 bits (126), Expect = 9e-21 Identities = 192/274 (70%), Gaps = 8/274 (3%) Strand=Plus/Minus Query 108288 GACACCTATAGCCCCGACGAACACCTCTGGGCCACCCTTCAGCGTGCTCCGTGGA-TGCC 108346 ||||| |||||||| || || |||| ||||||||| | || | | ||| || | | || Sbjct 92062 GACACGTATAGCCCGGATGAGTACCTTTGGGCCACCATCCAAAG-GATCCCTGAAGTCCC 92004 Query 108347 TGGCTCTGTTCCT---AGCCACCCCAAGTATCACATCTCAGACATGACTGCCATCGCCAG 108403 ||| ||| | || ||||| |||||| || | || ||||||| ||| |||| || Sbjct 92003 TGGTTCTCTCCCCTCAAGCCAT---AAGTATGACTTGTCCGACATGAATGCTGTCGCTAG 91947 Query 108404 GCTCGTCAAGTGGCAGTACCACGAGGGAGATGTCAGCATGGGGGCGCCTTATGCACCCTG 108463 | | ||||||||||||||| || || ||||| || || || ||||| |||| || Sbjct 91946 GTTTGTCAAGTGGCAGTACTTTGAAGGTGATGTTTCCAAAGGTGCTCCTTACCCACCGTG 91887 Query 108464 CTCTGGAATCCATCGGAGGGCCATCTGCATTTACGGGGCCGGGGACCTGTACTGGATTCT 108523 | ||| ||||| | | || | ||| ||| || || || ||| || |||||| || Sbjct 91886 CAGCGGAGTCCATGTGCGCTCCGTGTGCGTTTTTGGAGCTGGTGACTTGAGCTGGATGCT 91827 Query 108524 CCAGAACCATCACCTCTTGGCAAACAAGTTTGAC 108557 | || || ||| |||| || || ||||||||| Sbjct 91826 TCGCAAACACCACTTCTTCGCCAATAAGTTTGAC 91793 >seq26410 Length=4188 Score = 109 bits (120), Expect = 4e-19 Identities = 202/290 (70%), Gaps = 20/290 (7%) Strand=Plus/Minus Query 107749 TTGAAAACTTTGAACGGCTGCTGCGAGCCGTGTA--TGCCCCTCAGAACATATACTGTGT 107806 |||| | ||||||| |||| | | || | || |||||| ||||| | |||||||| Sbjct 2474 TTGACACCTTTGAAAGGCTCTTCAGGGCGATTTACATGCCCC--AGAACGTCTACTGTGT 2417 Query 107807 CCACGTGGATGTGAAGTCCCCAGAGACTTTCAAAGAGGCGGTCAAGGCCATTATTTC-CT 107865 ||||||||| ||| | |||||||||| || || || ||| || | ||| | || Sbjct 2416 GCACGTGGATAAGAAAGCATCAGAGACTTTTAAGGATGCCGTCCAG-CAGTTACTAAGCT 2358 Query 107866 GCTTCCCCAATGTCTTCATGGCCAGTAAGTT---GGTCCCGGTGGTTTATGCCTCCTGGT 107922 |||||||||||| |||| ||||| |||| |||| ||||| ||||| || | Sbjct 2357 GCTTCCCCAATGCCTTCCTGGCCTCTAAGACAGAGGTC---GTGGTCTATGCTGGCTTCT 2301 Query 107923 CCAGAGTGCAAGCTGACCTGAACTGTATGGAAGA----CTTGCTCCAGAGCTCAGTGCCA 107978 || | | || || ||||||||||| |||||||| | ||| | ||| || || Sbjct 2300 CCCGGCTCCAGGCAGACCTGAACTGCATGGAAGATCTGGTGGCTTCTGAG----GTCCCC 2245 Query 107979 TGGAAGTACTTACTGAATACATGCGGGACAGACTTCCCCATAAAGACCAA 108028 ||||||| | || || || |||||| ||||||||| | || ||||| Sbjct 2244 TGGAAGTTTGTCCTCAACACCTGCGGGCAGGACTTCCCCCTGAAAACCAA 2195 >seq26392 Length=4195 Score = 109 bits (120), Expect = 4e-19 Identities = 202/290 (70%), Gaps = 20/290 (7%) Strand=Plus/Minus Query 107749 TTGAAAACTTTGAACGGCTGCTGCGAGCCGTGTA--TGCCCCTCAGAACATATACTGTGT 107806 |||| | ||||||| |||| | | || | || |||||| ||||| | |||||||| Sbjct 2481 TTGACACCTTTGAAAGGCTCTTCAGGGCGATTTACATGCCCC--AGAACGTCTACTGTGT 2424 Query 107807 CCACGTGGATGTGAAGTCCCCAGAGACTTTCAAAGAGGCGGTCAAGGCCATTATTTC-CT 107865 ||||||||| ||| | |||||||||| || || || ||| || | ||| | || Sbjct 2423 GCACGTGGATAAGAAAGCATCAGAGACTTTTAAGGATGCCGTCCAG-CAGTTACTAAGCT 2365 Query 107866 GCTTCCCCAATGTCTTCATGGCCAGTAAGTT---GGTCCCGGTGGTTTATGCCTCCTGGT 107922 |||||||||||| |||| ||||| |||| |||| ||||| ||||| || | Sbjct 2364 GCTTCCCCAATGCCTTCCTGGCCTCTAAGACAGAGGTC---GTGGTCTATGCTGGCTTCT 2308 Query 107923 CCAGAGTGCAAGCTGACCTGAACTGTATGGAAGA----CTTGCTCCAGAGCTCAGTGCCA 107978 || | | || || ||||||||||| |||||||| | ||| | ||| || || Sbjct 2307 CCCGGCTCCAGGCAGACCTGAACTGCATGGAAGATCTGGTGGCTTCTGAG----GTCCCC 2252 Query 107979 TGGAAGTACTTACTGAATACATGCGGGACAGACTTCCCCATAAAGACCAA 108028 ||||||| | || || || |||||| ||||||||| | || ||||| Sbjct 2251 TGGAAGTTTGTCCTCAACACCTGCGGGCAGGACTTCCCCCTGAAAACCAA 2202 >seq710 Length=334933 Score = 91.5 bits (100), Expect = 1e-13 Identities = 227/338 (67%), Gaps = 14/338 (4%) Strand=Plus/Plus Query 107698 AAGAAGAGCTAGACTTCCCCATTGCCTACTCGATGGTGGTCCATGAGAAGA-TTGAAAAC 107756 |||||||| | | ||||||| | |||||| | |||||| |||| | ||| || || || Sbjct 56822 AAGAAGAGGTCGCCTTCCCCCTAGCCTACGCCATGGTGATCCACAA--AGACTTCAACAC 56879 Query 107757 -TTTGAACGGCTGCTGCGAGCCGTGTATGCCCCTCAGAACATATACTGTGTCCACGTGGA 107815 |||||| |||| | | ||| | || | || ||||| | ||||| || |||||||| Sbjct 56880 CTTTGAAAGGCTCTTCAGGGCCATTTACACGCCCCAGAATGTCTACTGCGTGCACGTGGA 56939 Query 107816 TGTGAAGTCCCCAGAGACTTTCAAAGAGGCGGTCAAGGCCATTATTTCC-TGCTTCCCCA 107874 || ||| |||| | || || ||| | ||||| ||| ||| | |||||||| | Sbjct 56940 TGAGAAAGCCCCCGGGAAGTTTAAAAAAGCGGTGT-GGCAGTTACTCGAGTGCTTCCCGA 56998 Query 107875 ATGTCTTCATGGCCAGTAAGTTGGTCCCGGTGGTTTATGCCTCCTGGTCCAGAGTGCAAG 107934 | | || |||| |||| |||||| |||| || ||| | | || | Sbjct 56999 ACGCTTTTCTGGCTTCTAAGACTAAGAAGGTGGTCTATGGTGGCTTCTCCCGGCTCCAGG 57058 Query 107935 CTGACCTGAACTGTATGGAAGA----CTTGCTCCAGAGCTCAGTGCCATGGAAGTACTTA 107990 | ||||||||||| |||||||| | ||| | || || || ||||| ||| | Sbjct 57059 CAGACCTGAACTGCATGGAAGATCTGTTGGCTTCCAAG----GTCCCCTGGAAATACGTC 57114 Query 107991 CTGAATACATGCGGGACAGACTTCCCCATAAAGACCAA 108028 || || || |||||| ||||||||| | || ||||| Sbjct 57115 CTCAACACCTGCGGGCAGGACTTCCCCCTGAAAACCAA 57152 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 348020822057502