Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ellobius_20lutescens_20[genbank_20GCA_5F001685075.1_202016-07-14] 58,423 sequences; 2,353,188,398 total letters Query= NC_002686.2 Length=124784 Score E Sequences producing significant alignments: (Bits) Value seq11739 129 5e-25 seq948 93.3 3e-14 seq19747 89.7 4e-13 >seq11739 Length=28935 Score = 129 bits (142), Expect = 5e-25 Identities = 293/433 (68%), Gaps = 12/433 (3%) Strand=Plus/Minus Query 19987 GGAACTGGAACGTTATCTGTATTTGGAATGCAATCTCGATATAACTTGAGAAATGAATTT 20046 || ||||| || || || || || || ||||| | | ||| ||| ||||| |||||||| Sbjct 18739 GGCACTGGCACCTTGTCGGTGTTAGGCATGCAGGCGCCATACAACCTGAGAGATGAATTT 18680 Query 20047 CCCTTATTAACTACGAAACGGGTATTTTGGAAAGGCGTTGTTGAAG-AGTTATTATGGTT 20105 || | | | || ||||| || || ||||| || ||| |||||| || | | ||||| Sbjct 18679 CCTCTGCTCATAACCAAACGAGTGTTCTGGAAGGGTGTT-TTGAAGGAGGTGCTGTGGTT 18621 Query 20106 TATTAAAGGATCAACAAATTCTACCGAGCTTGTAGAAAAAGGAGTTAAGATTTGGAGCGC 20165 ||| || ||||| |||| | ||| || || | |||||||| | || ||| || Sbjct 18620 TATCAAGGGATCCACAACTGCTAAAGAACTGGCCTCCAAAGGAGTGAGAATCTGGGATGC 18561 Query 20166 ACATGGATCTAAGCAATTTTTACACAGCAATGGATT---TGACAACCGTCAAGAGGGGGA 20222 |||| || || || || |||||| ||||| || || || || || ||||| Sbjct 18560 CAATGGGTCCCGACATATTCTAGACAGCATGGGATTCTCTG-CA--CGACAGGAAGGGGA 18504 Query 20223 TTTGGGTCCTGTGTATGGATTTCAATGGAGACATTTTGGAGCTGAATATGTTGACATGAA 20282 ||||| || || || || || || | ||||||||||| ||| || || || ||| | Sbjct 18503 GTTGGGCCCAGTTTACGGTTTCCATTAGAGACATTTTGTAGCAGACTACAAAGATATGGA 18444 Query 20283 CACAAATTATTTTGGACAAGGAGTAGATCAATTACAAAATGTTATTAATTTAATTAAAAC 20342 || |||| || | |||||||||| || | ||||| || ||| | | | ||||| Sbjct 18443 TTCAGATTACTTGAGTCAAGGAGTAGGCCAGCTGCAAAAAGTGATTGA--CAGTCAAAAC 18386 Query 20343 GAACCCAAACGACAGAAGAATTATTTTATGCGCCTGGAACGCTAAAGATGTGCCTTTAAT 20402 | || || | |||||||| || ||| | ||||| | |||||| | || | || Sbjct 18385 CAGTCCTGACAAGAGAAGAAT--CTTGATGTGTTCGGAACCCAAAAGATCTTCCCCTGAT 18328 Query 20403 GGCTTTGCCTCCA 20415 ||| | |||||| Sbjct 18327 GGCACTTCCTCCA 18315 >seq948 Length=285047 Score = 93.3 bits (102), Expect = 3e-14 Identities = 145/206 (70%), Gaps = 1/206 (0%) Strand=Plus/Minus Query 20569 GGTGACTTAGTCCACACCATAGGAGACGCGCATATTTACCTTAATCATATAGAACCTTTA 20628 || || || ||||||||| | ||||| || ||||||||||| |||||||| || || | | Sbjct 208650 GGGGATTTTGTCCACACCTTGGGAGATGCACATATTTACCTGAATCATATCGAGCCCTGA 208591 Query 20629 AAATTACAGTTAACACGACAACCAAAACAATTCCCAACTCTTCGCATTACTCGAACTGTT 20688 ||||| ||| | ||| | |||| || ||||||| || ||| || || ||| Sbjct 208590 AAATT-CAGCTTCAGCGAGAGCCAAGACCTTTCCCAAAGCTCAAAATTCTTCAAAAAGTT 208532 Query 20689 AAAGATATTAACGATTTTAAAGCTGATGATTTTGTGTTAGAAGGTTATAATCCCCATAAT 20748 | ||| | ||||| |||| ||| || ||| | | ||||||||||||| ||| Sbjct 208531 GAGACAATTGATGATTTCAAAGTTGAAGACTTTCAGATTGAAGGTTATAATCTACATCCA 208472 Query 20749 TCAATTCCAATGGAAATGTCTGTTTA 20774 | ||| |||||||||| | |||| Sbjct 208471 GCGATTAAAATGGAAATGGCCATTTA 208446 >seq19747 Length=23491 Score = 89.7 bits (98), Expect = 4e-13 Identities = 117/162 (72%), Gaps = 0/162 (0%) Strand=Plus/Plus Query 20388 AGATGTGCCTTTAATGGCTTTGCCTCCATGTCATATGCTATGCCAATTTTACGTTGCTAA 20447 |||| | || ||||||| ||||||| || ||| || || ||||| || || ||||| Sbjct 2634 AGATCTTCCCCTAATGGCACTGCCTCCTTGCCATGCCCTCTGTCAATTCTATGTAGCTAA 2693 Query 20448 TAATGAATTGTCGTGTCAAATGTATCAACGATCCGCTGATATGGGACTGGGTGTTCCTTT 20507 | || |||| || || | || || | || | |||||||| ||||| || || || Sbjct 2694 TGGGGAGCTGTCTTGCCAGCTCTACCAGAGGTCAGGAGATATGGGCCTGGGCGTGCCCTT 2753 Query 20508 CAATATTGCAAGTTATGCGCTGCTTACGTATATGATTGCACA 20549 ||| ||||| || ||| | ||||| || || ||||||||||| Sbjct 2754 CAACATTGCCAGCTATTCCCTGCTCACCTACATGATTGCACA 2795 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 398899768891735