Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ellobius_20lutescens_20[genbank_20GCA_5F001685075.1_202016-07-14] 58,423 sequences; 2,353,188,398 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq9705 125 6e-24 seq3071 100 3e-16 seq2959 96.9 3e-15 seq1738 91.5 1e-13 seq5338 89.7 5e-13 >seq9705 Length=66704 Score = 125 bits (138), Expect = 6e-24 Identities = 117/149 (79%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 23048 ACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCGTG 23107 ||||| |||||| || |||||||| ||||| ||||| || ||||| || || || ||| Sbjct 20453 ACCTCATCTTTGCTGGTATACTCTACTATTTCTGTACACAGGTTGCTGCATTTGATGGTG 20394 Query 23108 CCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCGTG 23167 |||| || ||||||||| || ||||| || ||||| ||||||||||||||||| || Sbjct 20393 CCCAGGTTCTGCTGGTTGCTCTTCCGATTACAGGAATCTTTGTAGAGCATGTACGGGGTA 20334 Query 23168 CCCGTCTCGACCTGCGACTCGATGATCGC 23196 || ||||| ||| ||||| ||||| || Sbjct 20333 CCTGTCTCTGTCTGTGACTCAATGATGGC 20305 >seq3071 Length=285302 Score = 100 bits (110), Expect = 3e-16 Identities = 155/219 (71%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| |||||| | ||||| || || || ||||| ||||| | || || ||||| || Sbjct 253380 ATGCAGATTTTCATGAAGACCCTTACGGGGAAAACCATCACGCTTGAGGTAGAACCCTCA 253321 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | | |||| ||||| | || ||| |||||||| | || || || ||| Sbjct 253320 GACACTATAGAAAATGTCAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGATCAG 253261 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACT-CTATGACTATGAGCGATTATAA 31371 ||| || || || |||||||| ||| ||||||| | || ||| || || || || Sbjct 253260 CAGAAGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGCCAT-ACTTTGTCTGACTACAA 253202 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACT 31410 ||| ||||| || || | ||||||||||| | ||||| Sbjct 253201 CATCCAAAAGGAGTCCATCCTTCATCTGGTGTTGAGACT 253163 >seq2959 Length=310600 Score = 96.9 bits (106), Expect = 3e-15 Identities = 162/233 (70%), Gaps = 1/233 (0%) Strand=Plus/Minus Query 31187 TCAAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAA 31246 ||||| |||||||| ||||| ||||| |||| ||||| || |||||| | || || || Sbjct 279848 TCAAA-ATGCAAATCTTCGTGAAGACCTTGACGGGCAAGACCATCACCCTGGAGGTCGAG 279790 Query 31247 CCGTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCC 31306 || |||| |||| | || || | || ||| || || ||| | || ||| Sbjct 279789 CCCAGTGACACCATCGAGAACGTGAAGGCCAAGATCCAGGATAAAGAGGGCATCCCCCCC 279730 Query 31307 GACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGAT 31366 ||||||||||| || || || |||||||| ||| ||||||| ||| | ||| Sbjct 279729 GACCAGCAGCGACTCATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGAT 279670 Query 31367 TATAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 || ||||| || ||||| || || || || ||||| || | || ||||| || Sbjct 279669 TACAACATCCAGAAAGAGTCCACCCTGCACCTGGTCCTCCGTCTCAGGGGTGG 279617 >seq1738 Length=291085 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 31182 TTGAATCAAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACG 31241 |||| | |||||||| || || || ||||| |||| ||||| || ||||| | || | Sbjct 19887 TTGATGCCAACATGCAGATCTTTGTGAAGACCCTGATGGGCAAGACCATCACTCTTGAGG 19946 Query 31242 TTGAACCGTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGC 31301 | || || |||| |||| | ||||| | || |||||||||||| | | Sbjct 19947 TCGAGCCCAGTGACACCATCGAGAATGTCAAGGCCAAGATCCAAGACAAGGAAGGCATCC 20006 Query 31302 CGCCCGACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGA 31361 | || ||||||||| | || ||||| |||||||| ||| |||| || ||| || Sbjct 20007 CACCTGACCAGCAGAGGCTGATATTTGCTGGCAAGCAGCTGGAGGATGGCCGGACCCTGT 20066 Query 31362 GCGATTATAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTG 31411 || || || || |||||||| || ||| | || ||||| ||| | ||| Sbjct 20067 CCGTCTACAATATCCAAAAAGAGTCCACTTTGCACCTGGTGCTTCGCCTG 20116 >seq5338 Length=92157 Score = 89.7 bits (98), Expect = 5e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 || |||||||| ||| | ||||| ||||| ||||||| |||||| | || || | ||| Sbjct 52372 AAAATGCAAATCTTCATGAAGACCCTGACCAGCAAAACCATCACCCTGGAGGTGGCGCCG 52313 Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309 |||| |||| | || || | || ||| || || ||| | || |||||| Sbjct 52312 AGTGACACCATCGAGAACGTGAAGGCCAAGATCCAGGATAAAGAGGGCATCCCCCCCGAC 52253 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTAT 31369 |||||||| || || || |||||||| ||| ||||||| ||| | ||||| Sbjct 52252 CAGCAGCGACTCATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGATTAC 52193 Query 31370 AACATTCAAAAAGAATCGACTCTTCATCTGGT 31401 ||||| || ||||| || || || || ||||| Sbjct 52192 AACATCCAGAAAGAGTCCACCCTGCACCTGGT 52161 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445440862370160