Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ellobius_20lutescens_20[genbank_20GCA_5F001685075.1_202016-07-14] 58,423 sequences; 2,353,188,398 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq4138 105 1e-17 seq19747 89.7 1e-12 >seq4138 Length=267950 Score = 105 bits (116), Expect = 1e-17 Identities = 294/447 (66%), Gaps = 8/447 (2%) Strand=Plus/Minus Query 101909 GAACTAATTGTTGCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATTCGCATCC 101968 |||| | |||| ||||||||||| || ||||| |||||||| ||| | || ||||| Sbjct 163026 GAACGAGTTGTGGCCTTTGCTGCTGTAGAAGGGATCTTCTTCTCTGGCTCTTTTGCATCA 162967 Query 101969 ATTTTCTGGATCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGAGTTCATT 102028 || |||||| ||||||| |||| | ||||||| || || | ||||| ||| | ||| Sbjct 162966 ATATTCTGGCTCAAGAAACGGGGACTGATGCCTGGCCTTACATTTTCCAACGAGCTTATT 162907 Query 102029 TCTAGGGACGAAGGTCTTCATCGCGACTTTGCATGCATGCTGTTGAAAAAGGGTTTTGTT 102088 || || || ||| | | | | |||||| ||| || |||| | | | || Sbjct 162906 AGCAGAGATGAGGGTTTACCCTGTGTCTTTGCCTGCCTGATGTT---CAGGCACCTGGTA 162850 Query 102089 GATACCCCATCAAGAG-AAAGGATTCTTGAAATTGTCACTGAAGCCGTCCGAATTGAACA 102147 | | || || ||| ||| | | ||||| ||| | || || | | || || Sbjct 162849 CACAAGCCGTC-GGAGCCAAGAGTACAAGAAATCATCAGT---GCAGTGAGGCTAGAGCA 162794 Query 102148 AGAATTTCTCACAGTTTCCCTGCCTGTTAAATTAGTGGGAATGAACTGCAAGTTGATGAG 102207 || |||||||| | |||||||||| || | | || |||||||||| |||||| Sbjct 162793 GGAGTTTCTCACGGAGGCCCTGCCTGTGAATCTCATCGGGATGAACTGCACCCTGATGAA 162734 Query 102208 CCAGTACATTGAATTTGTGGCAGATAAACTATTGGTTGAAATGGGACTAGAAAAGCACTA 102267 |||||||| ||||| ||| | || | || || | || | || | ||| | Sbjct 162733 GCAGTACATCGAATTCGTGCCGGACAGGCTTATGCTGGAGCTAGGGTTCAGCAAGATTTT 162674 Query 102268 TAATGTTACCAACCCCTTCCCATTCATGGACAATATTTCCCTCGAGAATAAGACCAACTT 102327 || || || || || ||||||| |||||||| | || ||||| ||||| Sbjct 162673 CAAAGTAGAAAATCCGTTTGACCTCATGGAAAATATTTCATTAGAAGGGAAGACAAACTT 162614 Query 102328 TTTTGAAAAGAGAGTCGCCGAGTATCA 102354 ||||| ||| |||| | ||||||||| Sbjct 162613 CTTTGAGAAGCGAGTGGGCGAGTATCA 162587 >seq19747 Length=23491 Score = 89.7 bits (98), Expect = 1e-12 Identities = 99/130 (76%), Gaps = 4/130 (3%) Strand=Plus/Plus Query 35567 GATCTTCACCTTATGGCTCTTCCTCCATGCCACATGACTGCT--CAATTTTATGTGGCTA 35624 ||||||| ||| ||||| || ||||| ||||| || | || ||||| ||||| |||| Sbjct 2635 GATCTTCCCCTAATGGCACTGCCTCCTTGCCA--TGCCCTCTGTCAATTCTATGTAGCTA 2692 Query 35625 ATGGAGAATTGTCGTGCCAGTTGTATCAGCGAAGCGGAGATGTCGGGTTGGGCGTGCCCT 35684 |||| || |||| |||||| | || ||| | |||||| | || |||||||||||| Sbjct 2693 ATGGGGAGCTGTCTTGCCAGCTCTACCAGAGGTCAGGAGATATGGGCCTGGGCGTGCCCT 2752 Query 35685 TCAATATTGC 35694 |||| ||||| Sbjct 2753 TCAACATTGC 2762 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 988843252153965