Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ellobius_20lutescens_20[genbank_20GCA_5F001685075.1_202016-07-14] 58,423 sequences; 2,353,188,398 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq4138 156 5e-33 seq9705 113 6e-20 seq474 107 2e-18 seq137 105 8e-18 seq3167 93.3 5e-14 >seq4138 Length=267950 Score = 156 bits (172), Expect = 5e-33 Identities = 337/501 (67%), Gaps = 6/501 (1%) Strand=Plus/Plus Query 33242 GTCAACATCTAAAGAAAAATGATTGTCTTCTTGA---GACATAACTCCCATTTTTTGGTA 33298 |||| |||| || | ||| ||| ||| || | ||||| || |||| | || || Sbjct 162532 GTCAGCATCCAAGGTGAAAGAATTCTCTGCTGAATTTGACATCACCTCCATCCTCTGATA 162591 Query 33299 TTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTTTCCATGAA 33358 || ||||| || || || || || || || || ||||| ||||| ||||||||||||| Sbjct 162592 CTCGCCCACTCGCTTCTCAAAGAAGTTTGTCTTCCCTTCTAATGAAATATTTTCCATGAG 162651 Query 33359 ATCAAACGGATTGGTAACATTGTAAAtttttttAAATCCCAATTCAGAAATCAATCTATC 33418 ||||||||||| || ||| |||| || | || || | || || | || || Sbjct 162652 GTCAAACGGATTTTCTACTTTGAAAATCTTGCTGAACCCTAGCTCCAGCATAAGCCTGTC 162711 Query 33419 TGCGACGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATGAGTTTAACTGG 33478 | |||||||| || || ||||||| || ||||| || ||||| || || || Sbjct 162712 CGGCACGAATTCGATGTACTGCTTCATCAGGGTGCAGTTCATCCCGATGAGATTCACAGG 162771 Query 33479 AAGAGCCACAGTAAGAAATTCTTGTTCAATGGATACCGCATTTGTTATAATAAATCTAAC 33538 || ||| | || ||||| || || || | || ||| | | || | | || | Sbjct 162772 CAGGGCCTCCGTGAGAAACTCCTGCTCTAGCCTCACTGCACTGATGAT--TTCTTGTA-C 162828 Query 33539 GGTTTCTTCACTCGGTGGATGTAATAAATGTTTAAACATCAAACATGCGAAATCGCAGTG 33598 || || ||| |||| | || | ||||||| || || || | ||| | Sbjct 162829 TCTTGGCTCCGACGGCTTGTGTACCAGGTGCCTGAACATCAGGCAGGCAAAGACACAGGG 162888 Query 33599 CAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACG 33658 | |||||| ||||| ||||| | ||||| ||||| || || || ||||| || || || Sbjct 162889 TAAACCCTCATCTCTGCTAATAAGCTCGTTGGAAAATGTAAGGCCAGGCATCAGTCCCCG 162948 Query 33659 CTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGC 33718 || || ||||| ||||| || || || || || || |||||||| |||||||| ||||| Sbjct 162949 TTTCTTGAGCCAGAATATTGATGCAAAAGAGCCAGAGAAGAAGATCCCTTCTACAGCAGC 163008 Query 33719 AAAGGCAATAAGTCTCTCTCC 33739 |||||| | || || ||||| Sbjct 163009 AAAGGCCACAACTCGTTCTCC 163029 >seq9705 Length=66704 Score = 113 bits (124), Expect = 6e-20 Identities = 107/137 (78%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 62388 ACTTGGAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACC 62447 || || |||||||| ||||| || || || ||||| || |||||||| || || || | Sbjct 25042 ACCTGAAATTCTCCTGACAAGACCCTGCGCGTGTAGATGTTACTGGTGTAAGGCTCAATG 24983 Query 62448 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 62507 ||||||||||| |||| ||| ||||||||||| ||||| ||||| || || | | |||| Sbjct 24982 GACTCATTATTCCCCAGAATCTGAGCAGTTGAAGCAGTAGGCATTGGGGCAATAAGTAAA 24923 Query 62508 CTATTTCTAAGACCGTA 62524 || ||||| | ||| || Sbjct 24922 CTGTTTCTTATACCATA 24906 Score = 93.3 bits (102), Expect = 5e-14 Identities = 137/193 (71%), Gaps = 6/193 (3%) Strand=Plus/Minus Query 62626 CATATGTATCATATGGTCC---TTCCTTCTCAGCTAGTTTACAACTCGCCTCTAATGCAC 62682 |||| || ||||| ||||| |||||| ||||| | ||| || || || || || | Sbjct 21531 CATACGTTTCATAGGGTCCACATTCCTTG---GCTAGGTCACAGCTGGCTTCCAAAGCTC 21475 Query 62683 CGTAATAAATGGTTTCAAAGATCTTCTTATTTAGATCTTGTGCTTCCGGGCTATCAAATG 62742 | |||||||| ||||||||||| | |||||| | || ||||| ||||| ||||| | Sbjct 21474 CATAATAAATAGTTTCAAAGATTTGCTTATTCAATAACTGGGCTTCTGGGCTTTCAAAGG 21415 Query 62743 GATAATTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTAT 62802 | || | | || || || || || |||| ||||| || ||||| || || || | || Sbjct 21414 GGTACCTCATCAGGATGAAAGCATCTGCTAGACCTTGTACCCCAATTCCAATGGGCCGAT 21355 Query 62803 GTCTCTTATTAGA 62815 | | ||||| || Sbjct 21354 GGCGTTTATTTGA 21342 Score = 93.3 bits (102), Expect = 5e-14 Identities = 123/171 (72%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 62113 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 62172 |||| ||||| || |||||||| || |||||| ||| | || || || || ||||| | Sbjct 28164 TCCAGCCGTAGAAGTGCATACTTGTGAGTTTGCCATAGTTGGGCTCAGCAATGTGGATGT 28105 Query 62173 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 62232 | | ||| || |||||||||||||| || || || || || ||||| || | | |||| Sbjct 28104 TTAAAGACTGGCTTTGATCGATGAAAGCACCTCTCTCAGCGGCCATCTTGAGAACAGTCT 28045 Query 62233 TTTGTGCAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAA 62283 | || | |||||||| | || ||||| | |||| | || || |||| Sbjct 28044 TCTGAGAGATTTCCCACACCGTCTTATAGAGCTGCTTCAGGTCATCAGGAA 27994 >seq474 Length=570891 Score = 107 bits (118), Expect = 2e-18 Identities = 95/119 (80%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 188489 GTTACTTTCTATGATGCGCGTATCGTTATACAAGCTTTCATGTTGACTACTGCAGTGTTT 188548 |||||||||||||||| | ||| | |||||||| || ||||||||||||| ||| Sbjct 290316 GTTACTTTCTATGATGTATACCTGGTTCTGCAAGCTTTTATACTGACTACTGCAGTCTTT 290257 Query 188549 CTTGCTCTGACTACATGTACTCTACAATCAAAGAGAGATTTCAGTAAACTTGTAACAGG 188607 |||| ||||| | | ||||||||| ||||||||||||||||| ||| ||| | |||| Sbjct 290256 CTTGGCTTGACTGCCTATACTCTACAGTCAAAGAGAGATTTCAGCAAATTTGGAGCAGG 290198 Score = 82.4 bits (90), Expect = 1e-10 Identities = 60/70 (86%), Gaps = 0/70 (0%) Strand=Plus/Minus Query 188172 TGCTCCTCCATCGAGGACGACTTCAACTATGACAGCTCGGTGGCGTCTGCCAGCGTGCAC 188231 || |||||||||||||| ||||||||||| | ||||| ||||| || |||||||||||| Sbjct 303394 TGTTCCTCCATCGAGGATGACTTCAACTACGGCAGCTGCGTGGCCTCGGCCAGCGTGCAC 303335 Query 188232 ATACGAATGG 188241 || || |||| Sbjct 303334 ATCCGCATGG 303325 >seq137 Length=869495 Score = 105 bits (116), Expect = 8e-18 Identities = 105/136 (77%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 33604 CCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33663 |||| ||||| ||||| | ||||| ||||| || || || ||||| || || || || | Sbjct 366585 CCTCATCTCTGCTAATAAGCTCGTTGGAAAATGTAAGGCCAGGCATCAGTCCCCGTTTCT 366644 Query 33664 TAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33723 | ||||| ||||| || || || || || || |||||||| |||||||| |||||||||| Sbjct 366645 TGAGCCAGAATATTGATGCAAAAGAGCCAGAGAAGAAGATCCCTTCTACAGCAGCAAAGG 366704 Query 33724 CAATAAGTCTCTCTCC 33739 | | || || ||||| Sbjct 366705 CCACAACTCGTTCTCC 366720 Score = 82.4 bits (90), Expect = 1e-10 Identities = 100/135 (74%), Gaps = 5/135 (4%) Strand=Plus/Plus Query 33240 AAGTCAACATCTAAAGAAAAATGATTGTCTTCTTGA----GACATAACTCCCATTTTTTG 33295 |||||| |||| || | ||| ||| ||| |||| ||||| || ||||| | || Sbjct 364688 AAGTCAGCATCCAAGGTGAAAGAATTCTCTG-TTGAATTTGACATCACCCCCATCCTCTG 364746 Query 33296 GTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTTTCCAT 33355 || || ||||| || || || || || || || || ||||| | ||| ||||||||||| Sbjct 364747 ATACTCGCCCACTCGCTTCTCAAAGAAGTTTGTCTTCCCTTCTAGTGAAATATTTTCCAT 364806 Query 33356 GAAATCAAACGGATT 33370 ||| ||||||||||| Sbjct 364807 GAAGTCAAACGGATT 364821 >seq3167 Length=233518 Score = 93.3 bits (102), Expect = 5e-14 Identities = 92/119 (77%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 33606 TCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 33665 || || || || || | |||||| || || |||||||||||||| ||||| | ||| || Sbjct 45201 TCATCCCTGCTGATCAGTTCGTTTGAGAAAGTGAGTCCGGGCATGAGGCCTCTCTTCTTC 45142 Query 33666 AGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGGC 33724 ||||| || || | ||| ||||| || || ||||| | ||||| || ||||||||||| Sbjct 45141 AGCCAGAAGATAGCAGCAAATGACCCAGAGAAGAAAACGCCTTCCACGGCAGCAAAGGC 45083 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629357652079440