Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ellobius_20lutescens_20[genbank_20GCA_5F001685075.1_202016-07-14] 58,423 sequences; 2,353,188,398 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq4138 149 8e-31 seq474 147 3e-30 seq9705 116 5e-21 seq137 111 2e-19 seq3167 98.7 1e-15 >seq4138 Length=267950 Score = 149 bits (164), Expect = 8e-31 Identities = 315/466 (68%), Gaps = 7/466 (2%) Strand=Plus/Plus Query 35852 GACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCT 35911 ||||| || |||| | || || || ||||| || || || || || || || || ||| Sbjct 162569 GACATCACCTCCATCCTCTGATACTCGCCCACTCGCTTCTCAAAGAAGTTTGTCTTCCCT 162628 Query 35912 TCTAATGATATATTTTCCATGAAATCGAATGGATTGATAACATTATAAAtttttttAAAT 35971 |||||||| ||||||||||||| || || ||||| || || |||| || | || Sbjct 162629 TCTAATGAAATATTTTCCATGAGGTCAAACGGATTTTCTACTTTGAAAATCTTGCTGAAC 162688 Query 35972 CCCAATTCAGAAATCAATCTATCTGCGACAAATTCTATATATGTTTTCATCATTTCACAA 36031 || | || || | || || | || ||||| || || ||||||| || Sbjct 162689 CCTAGCTCCAGCATAAGCCTGTCCGGCACGAATTCGATGTACTGCTTCATCAGGGTGCAG 162748 Query 36032 TTCATTCCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACC 36091 ||||| || || || || || || || ||| | || ||||| || || || | || Sbjct 162749 TTCATCCCGATGAGATTCACAGGCAGGGCCTCCGTGAGAAACTCCTGCTCTAGCCTCACT 162808 Query 36092 GCGTCTGTTATAATAGATATTACTGTTTCTTCACTCGG--TGGATACAATAAATGTTTAA 36149 || ||| || || | |||| || || ||| || ||| | || | | Sbjct 162809 GCA-CTG--ATGATTTCTTGTACTCTTGGCTCCGACGGCTTGTGTACCAGG--TGCCTGA 162863 Query 36150 ACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAA 36209 |||||| || || || | ||| ||| |||||| ||||| ||||| | |||||||||| Sbjct 162864 ACATCAGGCAGGCAAAGACACAGGGTAAACCCTCATCTCTGCTAATAAGCTCGTTGGAAA 162923 Query 36210 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAG 36269 | || || || ||||| || || || || || ||||| ||||| || ||||| || |||| Sbjct 162924 ATGTAAGGCCAGGCATCAGTCCCCGTTTCTTGAGCCAGAATATTGATGCAAAAGAGCCAG 162983 Query 36270 AAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCC 36315 | ||||| || |||||||| || |||||||| | || || ||||| Sbjct 162984 AGAAGAAGATCCCTTCTACAGCAGCAAAGGCCACAACTCGTTCTCC 163029 >seq474 Length=570891 Score = 147 bits (162), Expect = 3e-30 Identities = 155/204 (76%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 9227 TTATTTCTTATTAGATACTTCCAAAAGCTGTAACAGATGCAAGAACAGATTGATGATATC 9286 ||| || |||||| | | |||| || | | ||||| |||| |||||||||||| | || Sbjct 286972 TTACTTTTTATTAACTGCGTCCAGAAACCGCAACAGGTGCAGGAACAGATTGATAACGTC 287031 Query 9287 CAAGTAGAAATTGATAGAGGCTAACACATAGTCTTCAGGCGAGAGCTTATGTATTAGTGA 9346 |||||||| | |||| | ||||||||||| ||||| || || ||||| | || || || Sbjct 287032 CAAGTAGAGACTGATGGCAGCTAACACATACTCTTCGGGAGACAGCTTGTACATCAGCGA 287091 Query 9347 GTGCGTGTCATAGATAATGAATCCGCAGAATACAAGGGCCCCAAAAGCAGACAGGACCAG 9406 ||| || |||||||| || ||||| ||||| | ||||| || | || || || ||||| Sbjct 287092 GTGTGTATCATAGATGATAAATCCACAGAAAAGAAGGGTGCCTAGAGAAGCCAAGACCAA 287151 Query 9407 CTCCACTGTTTCACTTTGCACAAA 9430 || ||||||||||| || | ||| Sbjct 287152 TTCTACTGTTTCACTATGGAAAAA 287175 Score = 143 bits (158), Expect = 4e-29 Identities = 103/119 (87%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 9480 CCTGCTCCAAGTTTACTGAAATCTCTCTTTGATTGTAGAGTATATGCAGTCAGAGCAAGA 9539 |||||||||| ||| ||||||||||||||||| ||||||||||| ||||||| ||||| Sbjct 290198 CCTGCTCCAAATTTGCTGAAATCTCTCTTTGACTGTAGAGTATAGGCAGTCAAGCCAAGA 290257 Query 9540 AACACTGCAGTAGTCAGCATGAAAGCTTGCATAACGACATGCACATCATAGAAAGTAAC 9598 || |||||||||||||| || |||||||||| ||| | | ||||||||||||||||| Sbjct 290258 AAGACTGCAGTAGTCAGTATAAAAGCTTGCAGAACCAGGTATACATCATAGAAAGTAAC 290316 >seq9705 Length=66704 Score = 116 bits (128), Expect = 5e-21 Identities = 108/137 (79%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 65181 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACA 65240 || ||||||||||| ||||| || || || ||||| || |||||||| || || || | Sbjct 25042 ACCTGAAATTCTCCTGACAAGACCCTGCGCGTGTAGATGTTACTGGTGTAAGGCTCAATG 24983 Query 65241 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 65300 ||||||||||| |||| ||| ||||||||||| ||||| ||||| || || | | |||| Sbjct 24982 GACTCATTATTCCCCAGAATCTGAGCAGTTGAAGCAGTAGGCATTGGGGCAATAAGTAAA 24923 Query 65301 CTATTTCTAAGACCGTA 65317 || ||||| | ||| || Sbjct 24922 CTGTTTCTTATACCATA 24906 Score = 105 bits (116), Expect = 9e-18 Identities = 123/166 (74%), Gaps = 0/166 (0%) Strand=Plus/Minus Query 66799 CACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTATAA 66858 |||| || | ||| |||||||||||||| | || || || || || || || |||| | Sbjct 8322 CACTGAACACTTTCTTTGTTTCTTTGTGCAAGTTGGAGACAGCAATCCTTGCTGCTAAGA 8263 Query 66859 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCA 66918 ||||||| || || || | |||||| | || || ||| | || || |||||||| |||| Sbjct 8262 TGGCATAGTCAGGGTGCTTTGTAGTCAAGGTTGCAGCTGTCTCAGCAGCCAGAGTATCCA 8203 Query 66919 ATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCAT 66964 ||| || || || |||||| | || | |||||||| || ||||| Sbjct 8202 GTTCCACTGTGGTGACTCCACTGTACAGGCCTTGGATTACTTTCAT 8157 Score = 93.3 bits (102), Expect = 6e-14 Identities = 123/171 (72%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 64906 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 64965 |||| ||||| || |||||||| || |||||| ||| | || || || || ||||| | Sbjct 28164 TCCAGCCGTAGAAGTGCATACTTGTGAGTTTGCCATAGTTGGGCTCAGCAATGTGGATGT 28105 Query 64966 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 65025 | | ||| || |||||||||||||| || || || || || ||||| || | | |||| Sbjct 28104 TTAAAGACTGGCTTTGATCGATGAAAGCACCTCTCTCAGCGGCCATCTTGAGAACAGTCT 28045 Query 65026 TTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAA 65076 | || | |||||||| | || ||||| | |||| | || || |||| Sbjct 28044 TCTGAGAGATTTCCCACACCGTCTTATAGAGCTGCTTCAGGTCATCAGGAA 27994 >seq137 Length=869495 Score = 111 bits (122), Expect = 2e-19 Identities = 106/136 (78%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 36180 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 36239 |||| ||||| ||||| | ||||||||||| || || || ||||| || || || || | Sbjct 366585 CCTCATCTCTGCTAATAAGCTCGTTGGAAAATGTAAGGCCAGGCATCAGTCCCCGTTTCT 366644 Query 36240 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 36299 | ||||| ||||| || ||||| || ||||| ||||| || |||||||| || ||||||| Sbjct 366645 TGAGCCAGAATATTGATGCAAAAGAGCCAGAGAAGAAGATCCCTTCTACAGCAGCAAAGG 366704 Query 36300 CAATAAGTCTCTCTCC 36315 | | || || ||||| Sbjct 366705 CCACAACTCGTTCTCC 366720 Score = 84.2 bits (92), Expect = 3e-11 Identities = 52/56 (93%), Gaps = 0/56 (0%) Strand=Plus/Plus Query 36347 GCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGATA 36402 ||||| |||||||||||||| ||||||||||||||||| |||||||| |||||||| Sbjct 366884 GCCCAGTCGGCCTTCTTTTTCACACAAGGCATTGTCTCAATAGCATTGAAGAGATA 366939 >seq3167 Length=233518 Score = 98.7 bits (108), Expect = 1e-15 Identities = 93/119 (78%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 36182 TCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 36241 || || || || || | |||||| || || |||||||||||||| ||||| | ||| || Sbjct 45201 TCATCCCTGCTGATCAGTTCGTTTGAGAAAGTGAGTCCGGGCATGAGGCCTCTCTTCTTC 45142 Query 36242 AGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGC 36300 ||||| || || | |||||||| ||||| ||||||| ||||| || || |||||||| Sbjct 45141 AGCCAGAAGATAGCAGCAAATGACCCAGAGAAGAAAACGCCTTCCACGGCAGCAAAGGC 45083 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657692144631320