Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ellobius_20lutescens_20[genbank_20GCA_5F001685075.1_202016-07-14] 58,423 sequences; 2,353,188,398 total letters Query= NC_003401.1 Length=133719 Score E Sequences producing significant alignments: (Bits) Value seq11739 118 9e-22 seq19747 114 1e-20 seq24782 111 1e-19 >seq11739 Length=28935 Score = 118 bits (130), Expect = 9e-22 Identities = 210/301 (70%), Gaps = 4/301 (1%) Strand=Plus/Plus Query 21280 TGTACTCCGCCCCAAAATGTCTCCACTGGAACCCGTACACCGGCCCCAGATCGCCCTCGC 21339 |||| || || ||||||||||| | ||||| ||||| || || |||| || || || Sbjct 18454 TGTAGTCTGCTACAAAATGTCTCTAATGGAAACCGTAAACTGGGCCCAACTCCCCTTCCT 18513 Query 21340 GGCGGTCCCCGAAGCCCTGCGCCGCCAAAAAGGCG-CGGGACCCGTGCGCGTCCCAAATT 21398 | || | ||| ||| || | | | || | |||||||| | || ||||| ||| Sbjct 18514 GTCGTGCAGAGAATCCCAT-GCTGTCTAGAATATGTCGGGACCCATTGGCATCCCAGATT 18572 Query 21399 TTTACGCCGCGGCGCGACAGTTCGGTGG-AGTCGGTGGAGCCCCTGATAAACCACAGCAA 21457 | || || | | |||||| | | ||| | |||| ||| ||||||||||||||| Sbjct 18573 CTCACTCCTTTGGAGGCCAGTTCTTTAGCAGTTG-TGGATCCCTTGATAAACCACAGCAC 18631 Query 21458 CTCCTCCACGACGCCCCTCCAAAACACCCTTTTGGTGGTTAACAGAGGAAACTCGTCCCT 21517 ||||| || || ||| |||| ||||| | |||||| | | ||||||||| || || || Sbjct 18632 CTCCTTCAAAACACCCTTCCAGAACACTCGTTTGGTTATGAGCAGAGGAAATTCATCTCT 18691 Query 21518 GAGGTTATATCGGGCCTGAAGCCCGAACACGGACCTGGTGCCCACGCCCGTCCTGTCCTC 21577 ||||| ||| | ||||| | || ||||| ||| |||||| |||| | |||||| Sbjct 18692 CAGGTTGTATGGCGCCTGCATGCCTAACACCGACAAGGTGCCAGTGCCCATGTGGTCCTC 18751 Query 21578 C 21578 | Sbjct 18752 C 18752 >seq19747 Length=23491 Score = 114 bits (126), Expect = 1e-20 Identities = 122/161 (76%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 20991 AGGCCCGTGACGTGAGCGATCAGATACGTCAGGAGGGCGTAGCTGGCGATGTTAAACGGG 21050 |||| |||| ||| || |||| || || || |||| |||||||| ||||| || || Sbjct 2807 AGGCTTGTGATGTGTGCAATCATGTAGGTGAGCAGGGAATAGCTGGCAATGTTGAAGGGC 2748 Query 21051 ACCCCGAGGCCCATGTCGGCGGACCTCTGGTACAGCTGGCAGGACAGCTCCCCCCGAGCC 21110 || || |||||||| || | ||||||||||| |||||||| ||||||||||| ||| Sbjct 2747 ACGCCCAGGCCCATATCTCCTGACCTCTGGTAGAGCTGGCAAGACAGCTCCCCATTAGCT 2688 Query 21111 ACGTAAAACTGACACAAAACGTGACAAGGAGGGAGAGCCAT 21151 || || || ||||| | | || |||||||| || ||||| Sbjct 2687 ACATAGAATTGACAGAGGGCATGGCAAGGAGGCAGTGCCAT 2647 >seq24782 Length=13686 Score = 111 bits (122), Expect = 1e-19 Identities = 133/181 (73%), Gaps = 0/181 (0%) Strand=Plus/Minus Query 20991 AGGCCCGTGACGTGAGCGATCAGATACGTCAGGAGGGCGTAGCTGGCGATGTTAAACGGG 21050 ||||| |||| ||| || |||| || || || ||||| |||||||| ||||| || || Sbjct 3255 AGGCCTGTGATGTGTGCAATCATGTAGGTGAGCAGGGCATAGCTGGCAATGTTGAAGGGC 3196 Query 21051 ACCCCGAGGCCCATGTCGGCGGACCTCTGGTACAGCTGGCAGGACAGCTCCCCCCGAGCC 21110 || || ||||| || || | ||||||||||| |||||||| ||||||||||| | Sbjct 3195 ACGCCCAGGCCAATATCTCCTGACCTCTGGTAGAGCTGGCAAGACAGCTCCCCATTCACT 3136 Query 21111 ACGTAAAACTGACACAAAACGTGACAAGGAGGGAGAGCCATCCGCGCGAGGTCCGCGGGG 21170 || || || ||||| | | | |||||||| || |||||| | | || || | |||| Sbjct 3135 ACATAGAATTGACAGAGGGCAAGGCAAGGAGGCAGTGCCATCAGGGGAAGATCTGAGGGG 3076 Query 21171 T 21171 | Sbjct 3075 T 3075 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427471410521040