Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ellobius_20lutescens_20[genbank_20GCA_5F001685075.1_202016-07-14] 58,423 sequences; 2,353,188,398 total letters Query= NC_003494.1 Length=111362 Score E Sequences producing significant alignments: (Bits) Value seq4138 125 5e-24 seq3167 87.8 1e-12 seq137 87.8 1e-12 >seq4138 Length=267950 Score = 125 bits (138), Expect = 5e-24 Identities = 134/177 (76%), Gaps = 0/177 (0%) Strand=Plus/Minus Query 22748 TGGCCTTTGCGGCTGTTGAAGGCGTCATGTTTTCTGGGTCATTTGCGGCCATATTCTGGC 22807 |||||||||| ||||| ||||| || | || ||||| || ||||| | |||||||||| Sbjct 163016 TGGCCTTTGCTGCTGTAGAAGGGATCTTCTTCTCTGGCTCTTTTGCATCAATATTCTGGC 162957 Query 22808 TGAAGAAACGTTCGCTCATGCCAGGGTTGGCGTTTTCCAACGAGTTGATTAGCCGTGACG 22867 | |||||||| || ||||| || | | |||||||||||| | |||||| | || | Sbjct 162956 TCAAGAAACGGGGACTGATGCCTGGCCTTACATTTTCCAACGAGCTTATTAGCAGAGATG 162897 Query 22868 AAGGTCTACACTGTGACTTTGCTTGTATGCTGTTTAGGCAAATGGCAAACAAACCGT 22924 | ||| ||| ||||| |||||| || || |||| ||||| ||| | |||| |||| Sbjct 162896 AGGGTTTACCCTGTGTCTTTGCCTGCCTGATGTTCAGGCACCTGGTACACAAGCCGT 162840 >seq3167 Length=233518 Score = 87.8 bits (96), Expect = 1e-12 Identities = 93/123 (76%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 22748 TGGCCTTTGCGGCTGTTGAAGGCGTCATGTTTTCTGGGTCATTTGCGGCCATATTCTGGC 22807 |||||||||| || || |||||||| | || |||||||||||||| || || ||||||| Sbjct 45081 TGGCCTTTGCTGCCGTGGAAGGCGTTTTCTTCTCTGGGTCATTTGCTGCTATCTTCTGGC 45140 Query 22808 TGAAGAAACGTTCGCTCATGCCAGGGTTGGCGTTTTCCAACGAGTTGATTAGCCGTGACG 22867 ||||||| | |||||||| || | | || || ||||| |||| ||| | || | Sbjct 45141 TGAAGAAGAGAGGCCTCATGCCCGGACTCACTTTCTCAAACGAACTGATCAGCAGGGATG 45200 Query 22868 AAG 22870 ||| Sbjct 45201 AAG 45203 >seq137 Length=869495 Score = 87.8 bits (96), Expect = 1e-12 Identities = 92/121 (76%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 22748 TGGCCTTTGCGGCTGTTGAAGGCGTCATGTTTTCTGGGTCATTTGCGGCCATATTCTGGC 22807 |||||||||| ||||| ||||| || | || ||||| || ||||| | |||||||||| Sbjct 366707 TGGCCTTTGCTGCTGTAGAAGGGATCTTCTTCTCTGGCTCTTTTGCATCAATATTCTGGC 366648 Query 22808 TGAAGAAACGTTCGCTCATGCCAGGGTTGGCGTTTTCCAACGAGTTGATTAGCCGTGACG 22867 | |||||||| || ||||| || | | |||||||||||| | |||||| | || | Sbjct 366647 TCAAGAAACGGGGACTGATGCCTGGCCTTACATTTTCCAACGAGCTTATTAGCAGAGATG 366588 Query 22868 A 22868 | Sbjct 366587 A 366587 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355979950878469