Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ellobius_20lutescens_20[genbank_20GCA_5F001685075.1_202016-07-14] 58,423 sequences; 2,353,188,398 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq4138 163 4e-35 seq137 123 4e-23 seq9705 107 3e-18 seq3167 107 3e-18 >seq4138 Length=267950 Score = 163 bits (180), Expect = 4e-35 Identities = 316/464 (68%), Gaps = 3/464 (1%) Strand=Plus/Plus Query 49654 GACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCT 49713 ||||| || |||| | || || || ||||| || || || || || || || || ||| Sbjct 162569 GACATCACCTCCATCCTCTGATACTCGCCCACTCGCTTCTCAAAGAAGTTTGTCTTCCCT 162628 Query 49714 TCCAATGATATATTTTCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAAT 49773 || ||||| ||||||||||||| ||||||||||| || || |||| || | || Sbjct 162629 TCTAATGAAATATTTTCCATGAGGTCAAACGGATTTTCTACTTTGAAAATCTTGCTGAAC 162688 Query 49774 CCCAATTCAGAAATCAATCTATCCGCGACAAATTCTATATATGTTTTCATCATTTCACAA 49833 || | || || | || |||| || ||||| || || ||||||| || Sbjct 162689 CCTAGCTCCAGCATAAGCCTGTCCGGCACGAATTCGATGTACTGCTTCATCAGGGTGCAG 162748 Query 49834 TTCATTCCTATAAGTTTAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACC 49893 ||||| || || || || || || || ||| | || ||||| || || || | || Sbjct 162749 TTCATCCCGATGAGATTCACAGGCAGGGCCTCCGTGAGAAACTCCTGCTCTAGCCTCACT 162808 Query 49894 GCATCTGTTATAATAGATCTAACGGTTTCTTCACTCGGTGGATGCAATAAATGTTTAAAC 49953 ||| ||| || || | || || || ||| || | | || | ||| Sbjct 162809 GCA-CTG--ATGATTTCTTGTACTCTTGGCTCCGACGGCTTGTGTACCAGGTGCCTGAAC 162865 Query 49954 ATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAAC 50013 |||| || || || | ||| | | |||||| ||||| ||||| || ||||||||||| Sbjct 162866 ATCAGGCAGGCAAAGACACAGGGTAAACCCTCATCTCTGCTAATAAGCTCGTTGGAAAAT 162925 Query 50014 GTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCAGAA 50073 || || || ||||| || || || || || ||||| ||||| || ||||| || ||||| Sbjct 162926 GTAAGGCCAGGCATCAGTCCCCGTTTCTTGAGCCAGAATATTGATGCAAAAGAGCCAGAG 162985 Query 50074 AAGAAGATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCC 50117 |||||||| |||||||| || |||||||| |||| || ||||| Sbjct 162986 AAGAAGATCCCTTCTACAGCAGCAAAGGCCACAACTCGTTCTCC 163029 >seq137 Length=869495 Score = 123 bits (136), Expect = 4e-23 Identities = 109/136 (80%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 49982 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 50041 |||| ||||| ||||| || ||||||||||| || || || ||||| || || || || | Sbjct 366585 CCTCATCTCTGCTAATAAGCTCGTTGGAAAATGTAAGGCCAGGCATCAGTCCCCGTTTCT 366644 Query 50042 TAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGG 50101 | ||||| ||||| || ||||| || ||||| |||||||| |||||||| || ||||||| Sbjct 366645 TGAGCCAGAATATTGATGCAAAAGAGCCAGAGAAGAAGATCCCTTCTACAGCAGCAAAGG 366704 Query 50102 CAACAAGTCTCTCTCC 50117 | |||| || ||||| Sbjct 366705 CCACAACTCGTTCTCC 366720 >seq9705 Length=66704 Score = 107 bits (118), Expect = 3e-18 Identities = 106/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 79060 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATATGGTTCCACC 79119 || ||||||||||| ||||| || || || ||||| || |||||||| || || || | Sbjct 25042 ACCTGAAATTCTCCTGACAAGACCCTGCGCGTGTAGATGTTACTGGTGTAAGGCTCAATG 24983 Query 79120 GATTCATTATTTCCCAAAATTTGAGCAGTTGATGCCGTTGGCATAGGTGCCACCAATAAA 79179 || |||||||| |||| ||| ||||||||||| || || ||||| || || | | |||| Sbjct 24982 GACTCATTATTCCCCAGAATCTGAGCAGTTGAAGCAGTAGGCATTGGGGCAATAAGTAAA 24923 Query 79180 CTATTTCTAAGACCGTA 79196 || ||||| | ||| || Sbjct 24922 CTGTTTCTTATACCATA 24906 Score = 96.9 bits (106), Expect = 5e-15 Identities = 124/171 (73%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 78785 TCCATCCGTAGAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 78844 |||| |||||||| |||||||| || |||||| ||| | || || || || ||||| | Sbjct 28164 TCCAGCCGTAGAAGTGCATACTTGTGAGTTTGCCATAGTTGGGCTCAGCAATGTGGATGT 28105 Query 78845 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 78904 | | ||| || |||||||||||||| || || || || || ||||| || | | |||| Sbjct 28104 TTAAAGACTGGCTTTGATCGATGAAAGCACCTCTCTCAGCGGCCATCTTGAGAACAGTCT 28045 Query 78905 TTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAA 78955 | || | |||||||| | || ||||| | |||| | || || |||| Sbjct 28044 TCTGAGAGATTTCCCACACCGTCTTATAGAGCTGCTTCAGGTCATCAGGAA 27994 Score = 84.2 bits (92), Expect = 3e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 79939 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGC 79998 ||||| ||||| |||||||| ||||||||||| || | || ||||| | || || ||| Sbjct 18665 ACTCGCTTCATGAAGAGATCCGGAATCCAAAGGGCAAAGAAGAGATCCCGGGCTCGCTGC 18606 Query 79999 TCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGT 80058 || || || ||||| ||||| || | || |||||| | | || || | ||||| || Sbjct 18605 TCTTCCTTCCCTGTGTTCTTCTTCAAGTCAAGGAACTCAAAGATGTCTAAGTGCCAAGGC 18546 Query 80059 TCCAAGTATATGGC 80072 |||| ||| || || Sbjct 18545 TCCAGGTAAATAGC 18532 >seq3167 Length=233518 Score = 107 bits (118), Expect = 3e-18 Identities = 104/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 49984 TCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 50043 || || || || || |||||||| || || |||||||||||||| ||||| | ||| || Sbjct 45201 TCATCCCTGCTGATCAGTTCGTTTGAGAAAGTGAGTCCGGGCATGAGGCCTCTCTTCTTC 45142 Query 50044 AGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGGCA 50103 ||||| || || | |||||||||||||| ||||| | ||||| || || |||||||| Sbjct 45141 AGCCAGAAGATAGCAGCAAATGACCCAGAGAAGAAAACGCCTTCCACGGCAGCAAAGGCC 45082 Query 50104 ACAAGTCTCTCTCC 50117 || | ||| || || Sbjct 45081 ACCACTCTTTCCCC 45068 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 717744257273720