Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ellobius_20lutescens_20[genbank_20GCA_5F001685075.1_202016-07-14] 58,423 sequences; 2,353,188,398 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq4138 118 1e-21 seq3167 84.2 2e-11 >seq4138 Length=267950 Score = 118 bits (130), Expect = 1e-21 Identities = 121/158 (77%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 13872 CACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAAT 13931 || ||||| |||| | | ||||||||||| |||||||| ||||| |||||||| | Sbjct 162872 CAGGCAAAGACACAGGGTAAACCCTCATCTCTGCTAATAAGCTCGTTGGAAAATGTAAGG 162931 Query 13932 CCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAAT 13991 || ||||||| ||| ||||| || | ||| ||||||| ||||| || || || ||||| Sbjct 162932 CCAGGCATCAGTCCCCGTTTCTTGAGCCAGAATATTGATGCAAAAGAGCCAGAGAAGAAG 162991 Query 13992 ATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCC 14029 || || || || |||||||| || | | ||||||||| Sbjct 162992 ATCCCTTCTACAGCAGCAAAGGCCACAACTCGTTCTCC 163029 >seq3167 Length=233518 Score = 84.2 bits (92), Expect = 2e-11 Identities = 90/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 13896 TCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttttt 13955 ||||| || || || ||||||||||| || || | ||| ||||| | |||| || || Sbjct 45201 TCATCCCTGCTGATCAGTTCGTTTGAGAAAGTGAGTCCGGGCATGAGGCCTCTCTTCTTC 45142 Query 13956 AACCAAAATATTGCAGCAAATGACCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGC 14014 | ||| || || |||||||||||||| || ||||| | || || || |||||||| || Sbjct 45141 AGCCAGAAGATAGCAGCAAATGACCCAGAGAAGAAAACGCCTTCCACGGCAGCAAAGGC 45083 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479377660638200