Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ellobius_20lutescens_20[genbank_20GCA_5F001685075.1_202016-07-14] 58,423 sequences; 2,353,188,398 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq4138 163 4e-35 seq137 120 4e-22 seq9705 114 2e-20 seq3167 102 1e-16 >seq4138 Length=267950 Score = 163 bits (180), Expect = 4e-35 Identities = 341/503 (68%), Gaps = 10/503 (2%) Strand=Plus/Plus Query 41725 GTCAACATCTAAAGAAAAATGATTGTCTTCTTGA---GACATAACTCCCATTTTTTGGTA 41781 |||| |||| || | ||| ||| ||| || | ||||| || |||| | || || Sbjct 162532 GTCAGCATCCAAGGTGAAAGAATTCTCTGCTGAATTTGACATCACCTCCATCCTCTGATA 162591 Query 41782 TTCACCCACACGTTTTTCGAAAAAATTAGTCTTTCCTTCCAATGATATATTTTCCATGAA 41841 || ||||| || || || || || || ||||| ||||| ||||| ||||||||||||| Sbjct 162592 CTCGCCCACTCGCTTCTCAAAGAAGTTTGTCTTCCCTTCTAATGAAATATTTTCCATGAG 162651 Query 41842 ATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAATCAATCTATC 41901 ||||||||||| || || |||| || | || || | || || | || || Sbjct 162652 GTCAAACGGATTTTCTACTTTGAAAATCTTGCTGAACCCTAGCTCCAGCATAAGCCTGTC 162711 Query 41902 TGCGATGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGTTTAACTGG 41961 | | |||||| || || ||||||| || ||||| || || || || || || Sbjct 162712 CGGCACGAATTCGATGTACTGCTTCATCAGGGTGCAGTTCATCCCGATGAGATTCACAGG 162771 Query 41962 AAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAATAGATCTTAC 42021 || ||| | || ||||| || || || | || || ||| || || | ||| Sbjct 162772 CAGGGCCTCCGTGAGAAACTCCTGCTCTAGCCTCACTGCA-CTG--ATGATTTCTTGTAC 162828 Query 42022 TGTTTCTTCACTCGG--TGGATACAATAAATGTTTAAACATCAAACATGCGAAATCGCAG 42079 | || || ||| || ||| | || | ||||||| || || || | ||| Sbjct 162829 TCTTGGCTCCGACGGCTTGTGTACCAGG--TGCCTGAACATCAGGCAGGCAAAGACACAG 162886 Query 42080 TGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCA 42139 | | |||||||||||| ||||| | ||||||||||| || || || ||||| || || Sbjct 162887 GGTAAACCCTCATCTCTGCTAATAAGCTCGTTGGAAAATGTAAGGCCAGGCATCAGTCCC 162946 Query 42140 CGCTTTTTAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCC 42199 || || || ||||| ||||| || ||||| || ||||| |||||||| |||||||| || Sbjct 162947 CGTTTCTTGAGCCAGAATATTGATGCAAAAGAGCCAGAGAAGAAGATCCCTTCTACAGCA 163006 Query 42200 GCAAAGGCAATAAGTCTCTCTCC 42222 |||||||| | || || ||||| Sbjct 163007 GCAAAGGCCACAACTCGTTCTCC 163029 >seq137 Length=869495 Score = 120 bits (132), Expect = 4e-22 Identities = 108/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 42087 CCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 42146 |||||||||| ||||| | ||||||||||| || || || ||||| || || || || | Sbjct 366585 CCTCATCTCTGCTAATAAGCTCGTTGGAAAATGTAAGGCCAGGCATCAGTCCCCGTTTCT 366644 Query 42147 TAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGG 42206 | ||||| ||||| || ||||| || ||||| |||||||| |||||||| || ||||||| Sbjct 366645 TGAGCCAGAATATTGATGCAAAAGAGCCAGAGAAGAAGATCCCTTCTACAGCAGCAAAGG 366704 Query 42207 CAATAAGTCTCTCTCC 42222 | | || || ||||| Sbjct 366705 CCACAACTCGTTCTCC 366720 Score = 91.5 bits (100), Expect = 2e-13 Identities = 136/189 (72%), Gaps = 3/189 (2%) Strand=Plus/Plus Query 42451 ATTTTCGTTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATA 42510 |||||| || ||||| || ||||| || ||||| || |||| || || |||||||| Sbjct 369133 ATTTTCATTGACTATGCCATCACTCGCCGCAAAGAAAGCCAGGACGTGAGATATAAAATG 369192 Query 42511 TTTTTCGTCCGGTGTTAATTTATTCCAATCATTGA-TATCTTTAGATATATCTACTTCTT 42569 | | ||||| ||| || | |||| | |||| |||| || || | || || || | Sbjct 369193 TCTCTCGTCGGGT-TTCAGCGCTTCCCAGTGTTGAATATCCTTGGAGAGGTCCACCTCCT 369251 Query 42570 CTACCGTCCAAAATGATGCTTCTGCCTTTTTATACATATTCCAGATATCATGATATTGAA 42629 | ||||||| || || || || || || || ||||| | |||||||||||| |||| | Sbjct 369252 CAGCCGTCCAGAAGGAGGCCTCGGCTTTCTTGTACATCTGCCAGATATCATGGTATTCGA 369311 Query 42630 TTGGGAAAA 42638 |||||||| Sbjct 369312 -TGGGAAAA 369319 Score = 86.0 bits (94), Expect = 8e-12 Identities = 101/135 (75%), Gaps = 5/135 (4%) Strand=Plus/Plus Query 41723 AAGTCAACATCTAAAGAAAAATGATTGTCTTCTTGA----GACATAACTCCCATTTTTTG 41778 |||||| |||| || | ||| ||| ||| |||| ||||| || ||||| | || Sbjct 364688 AAGTCAGCATCCAAGGTGAAAGAATTCTCTG-TTGAATTTGACATCACCCCCATCCTCTG 364746 Query 41779 GTATTCACCCACACGTTTTTCGAAAAAATTAGTCTTTCCTTCCAATGATATATTTTCCAT 41838 || || ||||| || || || || || || ||||| ||||| | ||| ||||||||||| Sbjct 364747 ATACTCGCCCACTCGCTTCTCAAAGAAGTTTGTCTTCCCTTCTAGTGAAATATTTTCCAT 364806 Query 41839 GAAATCAAACGGATT 41853 ||| ||||||||||| Sbjct 364807 GAAGTCAAACGGATT 364821 >seq9705 Length=66704 Score = 114 bits (126), Expect = 2e-20 Identities = 107/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 71143 ACTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATACGGTTCCACT 71202 || ||||||||||| ||||| || || || ||||| || |||||||| || || || | Sbjct 25042 ACCTGAAATTCTCCTGACAAGACCCTGCGCGTGTAGATGTTACTGGTGTAAGGCTCAATG 24983 Query 71203 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAGA 71262 ||||||||||| |||| ||| ||||||||||| ||||| ||||| || || | | || | Sbjct 24982 GACTCATTATTCCCCAGAATCTGAGCAGTTGAAGCAGTAGGCATTGGGGCAATAAGTAAA 24923 Query 71263 CTATTTCTAAGACCAT 71278 || ||||| | ||||| Sbjct 24922 CTGTTTCTTATACCAT 24907 Score = 96.9 bits (106), Expect = 5e-15 Identities = 124/171 (73%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 70868 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAGCTAGGATCGGCTATGTGAATAT 70927 |||| ||||| || |||||||| || |||||| |||| | || || || ||||| || | Sbjct 28164 TCCAGCCGTAGAAGTGCATACTTGTGAGTTTGCCATAGTTGGGCTCAGCAATGTGGATGT 28105 Query 70928 TCATCGACTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 70987 | | ||||| |||||||||||||| || || || || || ||||| || | | |||| Sbjct 28104 TTAAAGACTGGCTTTGATCGATGAAAGCACCTCTCTCAGCGGCCATCTTGAGAACAGTCT 28045 Query 70988 TTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAA 71038 | || | |||||||| | || ||||| | |||| | || || |||| Sbjct 28044 TCTGAGAGATTTCCCACACCGTCTTATAGAGCTGCTTCAGGTCATCAGGAA 27994 Score = 95.1 bits (104), Expect = 2e-14 Identities = 135/190 (71%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 71381 CATATGTATCGTATGGTCCTTCTTTTTCGGCTAGTTCACAACTCGCCTCTAATGCTCCAT 71440 |||| || || || ||||| || | |||||| ||||| || || || || ||||||| Sbjct 21531 CATACGTTTCATAGGGTCCACATTCCTTGGCTAGGTCACAGCTGGCTTCCAAAGCTCCAT 21472 Query 71441 AATAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCCGGGCTATCAAATGGAT 71500 ||||||| ||||| || || | |||||| | || ||||| ||||| ||||| || | Sbjct 21471 AATAAATAGTTTCAAAGATTTGCTTATTCAATAACTGGGCTTCTGGGCTTTCAAAGGGGT 21412 Query 71501 AATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACGCCAATACCGATAGGTCTGTGTC 71560 | | | || || || || ||||||| ||||| || ||||| || || || | || | Sbjct 21411 ACCTCATCAGGATGAAAGCATCTGCTAGACCTTGTACCCCAATTCCAATGGGCCGATGGC 21352 Query 71561 TCTTATTAGA 71570 ||||| || Sbjct 21351 GTTTATTTGA 21342 Score = 93.3 bits (102), Expect = 6e-14 Identities = 116/159 (73%), Gaps = 0/159 (0%) Strand=Plus/Minus Query 72397 CTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAAC 72456 ||||||| ||| |||| | || || ||||| || | || ||||| || || |||||| Sbjct 13139 CTAGACAGTTGTGGACGGTTGGTCCCGGCATTGAAGAGAGTTGGAGAGGCATGAGTAAAC 13080 Query 72457 CATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATCCCATTGATGTATT 72516 || || ||||| || || ||||| || ||||| || | || ||||| || || || Sbjct 13079 CACTTCTCAGAAAGCAGGTTGTATGTTTCAATGGCAGCGTCAATATCTTCTTTGTGAATC 13020 Query 72517 CCTACCGCGACACGCATTAACATATGCTGAGGTCTTTCA 72555 || || | || | ||| ||||||||||| ||||||||| Sbjct 13019 CCCACAGATACCCTCATCAACATATGCTGTGGTCTTTCA 12981 Score = 84.2 bits (92), Expect = 3e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 72022 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGC 72081 ||||| ||||| |||||||| ||||||||||| || | || ||||| | || || ||| Sbjct 18665 ACTCGCTTCATGAAGAGATCCGGAATCCAAAGGGCAAAGAAGAGATCCCGGGCTCGCTGC 18606 Query 72082 TCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGT 72141 || || || ||||| ||||| || | || |||||| | | || || | ||||| || Sbjct 18605 TCTTCCTTCCCTGTGTTCTTCTTCAAGTCAAGGAACTCAAAGATGTCTAAGTGCCAAGGC 18546 Query 72142 TCCAAGTATATGGC 72155 |||| ||| || || Sbjct 18545 TCCAGGTAAATAGC 18532 >seq3167 Length=233518 Score = 102 bits (112), Expect = 1e-16 Identities = 94/119 (79%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 42089 TCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 42148 ||||| || || || | |||||| || || |||||||||||||| ||||| | ||| || Sbjct 45201 TCATCCCTGCTGATCAGTTCGTTTGAGAAAGTGAGTCCGGGCATGAGGCCTCTCTTCTTC 45142 Query 42149 AGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGGC 42207 ||||| || |||| |||||||| ||||| ||||| | ||||| || || |||||||| Sbjct 45141 AGCCAGAAGATAGCAGCAAATGACCCAGAGAAGAAAACGCCTTCCACGGCAGCAAAGGC 45083 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 670649075431480