Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ellobius_20lutescens_20[genbank_20GCA_5F001685075.1_202016-07-14] 58,423 sequences; 2,353,188,398 total letters Query= NC_005038.1 Length=99657 Score E Sequences producing significant alignments: (Bits) Value seq2959 82.4 5e-11 >seq2959 Length=310600 Score = 82.4 bits (90), Expect = 5e-11 Identities = 148/215 (69%), Gaps = 6/215 (3%) Strand=Plus/Plus Query 33161 ACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATCC 33220 |||| |||| || |||||||| || || ||||||||||| | | || | || ||| Sbjct 279635 ACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCC 279694 Query 33221 AATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTC---G 33277 | ||||| ||| ||| || | || |||||||| | ||| ||||| ||||| || | Sbjct 279695 AGCTGCTTGCCAGCAAAGATGAGTCGCTGCTGGTCGGGGGGGATGCCCTCTTTATCCTGG 279754 Query 33278 CTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGTT 33337 | | ||| || || | | || ||||| |||| | || ||||| || || || Sbjct 279755 ATCTTGGCC---TTCACGTTCTCGATGGTGTCACTGGGCTCGACCTCCAGGGTGATGGTC 279811 Query 33338 TTTCCCGTAAGAGTTTTTACGAAAATTTGCATGTT 33372 || ||||| | || || ||||| |||||||| || Sbjct 279812 TTGCCCGTCAAGGTCTTCACGAAGATTTGCATTTT 279846 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 318550620685854