Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ellobius_20lutescens_20[genbank_20GCA_5F001685075.1_202016-07-14] 58,423 sequences; 2,353,188,398 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq4138 152 4e-32 seq3167 87.8 2e-12 seq137 84.2 2e-11 >seq4138 Length=267950 Score = 152 bits (168), Expect = 4e-32 Identities = 310/458 (68%), Gaps = 13/458 (3%) Strand=Plus/Plus Query 12841 ATTTGACATAACAGACATTTTTTGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTT 12900 ||||||||| || ||| | ||||| |||| |||| || ||||| |||||||| || Sbjct 162565 ATTTGACATCACCTCCATCCTCTGATACTCGCCCACTCGCTTCTCAAAGAAGTTTGTCTT 162624 Query 12901 TCCTTCTAACGAAATATTTTCCATAAAATCGAAAGGATTT-----TTCGAACAATAGTAT 12955 |||||||| |||||||||||||| | || || |||||| || ||| ||| Sbjct 162625 CCCTTCTAATGAAATATTTTCCATGAGGTCAAACGGATTTTCTACTTTGAA-AAT----C 162679 Query 12956 TTTTTACACCCTAATTCTAGTAACAATCTGTCAGCAACAAACTCTATGTACTGTTTCATT 13015 || | |||||| || || | | ||||| | || || || |||||||| ||||| Sbjct 162680 TTGCTGAACCCTAGCTCCAGCATAAGCCTGTCCGGCACGAATTCGATGTACTGCTTCATC 162739 Query 13016 AAATCACAGTTCATTCCTATTAATTTTACAGGCATAGCTTCTGTTAAAAAGtttttttCT 13075 | |||||||| || || | || ||||||| || || || | ||| | | ||| Sbjct 162740 AGGGTGCAGTTCATCCCGATGAGATTCACAGGCAGGGCCTCCGTGAGAAACTCCTGCTCT 162799 Query 13076 ATATCAACTGCTTCGATAACTATGTCTCTTATTACGTTCTCTAATGGAGGATTTGATAGA 13135 | ||||| ||| || ||| || | ||| | || | | || Sbjct 162800 AGCCTCACTGCACTGAT---GATTTCTTGTACTCTTGGCTCCGACGGCTTGTGTACCAGG 162856 Query 13136 TGCTTAAACATCATACATGCAAAATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCG 13195 ||| | ||||||| || ||||| ||||| | || || |||||||| || || |||||| Sbjct 162857 TGCCTGAACATCAGGCAGGCAAAGACACAGGGTAAACCCTCATCTCTGCTAATAAGCTCG 162916 Query 13196 TTTGAAAATGTTAGACCCGGCATAAGCCCTCGTTTTTTAATCCAAAATATAGCAGCAAAC 13255 || |||||||| || || ||||| || || ||||| || | ||| ||||| | ||||| Sbjct 162917 TTGGAAAATGTAAGGCCAGGCATCAGTCCCCGTTTCTTGAGCCAGAATATTGATGCAAAA 162976 Query 13256 GAACCCGaaaaaaaTATTCCTTCAACTGCTGCAAACGC 13293 || || || || || || ||||| || || ||||| || Sbjct 162977 GAGCCAGAGAAGAAGATCCCTTCTACAGCAGCAAAGGC 163014 >seq3167 Length=233518 Score = 87.8 bits (96), Expect = 2e-12 Identities = 71/86 (83%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 12980 AATCTGTCAGCAACAAACTCTATGTACTGTTTCATTAAATCACAGTTCATTCCTATTAAT 13039 ||||||||||| |||||||| || ||||||||||| ||| ||||||||||||| || | Sbjct 50950 AATCTGTCAGCTACAAACTCAATATACTGTTTCATCAAAACACAGTTCATTCCAATGAGG 50891 Query 13040 TTTACAGGCATAGCTTCTGTTAAAAA 13065 ||||||| |||||||| ||||| Sbjct 50890 CCGACAGGCAAGGCTTCTGTCAAAAA 50865 Score = 84.2 bits (92), Expect = 2e-11 Identities = 104/141 (74%), Gaps = 1/141 (1%) Strand=Plus/Minus Query 13173 CTTCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACCCGGCATAAGCCCTCGTTTTT 13232 ||||||| || || || || |||||||| || || || || ||||| || |||| || | Sbjct 45203 CTTCATCCCTGCTGATCAGTTCGTTTGAGAAAGTGAGTCCGGGCATGAGGCCTCTCTTCT 45144 Query 13233 TAATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaTATTCCTTCAACTGCTGCAAACG 13292 | | ||| || ||||||||||| || || || || || | ||||| || || ||||| | Sbjct 45143 TCAGCCAGAAGATAGCAGCAAATGACCCAGAGAAGAAAACGCCTTCCACGGCAGCAAAGG 45084 Query 13293 CTATCAACCTTTCACCATACG 13313 | | || ||||| || |||| Sbjct 45083 CCACCACTCTTTC-CCCTACG 45064 Score = 82.4 bits (90), Expect = 7e-11 Identities = 66/80 (83%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 12862 TTGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTCCTTCTAACGAAATATTTTC 12921 ||| ||||| ||||| || ||||| || |||||||| ||||| |||||||| ||||| Sbjct 51900 TTGGTATTCAGAAACTCGCTTCTCAAAGAAATTTGTTTTCCCTTCCAACGAAATGTTTTC 51841 Query 12922 CATAAAATCGAAAGGATTTT 12941 ||||||||| || ||||||| Sbjct 51840 CATAAAATCAAAGGGATTTT 51821 >seq137 Length=869495 Score = 84.2 bits (92), Expect = 2e-11 Identities = 79/101 (78%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 12841 ATTTGACATAACAGACATTTTTTGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTT 12900 ||||||||| || ||| | ||||| |||| |||| || ||||| |||||||| || Sbjct 364723 ATTTGACATCACCCCCATCCTCTGATACTCGCCCACTCGCTTCTCAAAGAAGTTTGTCTT 364782 Query 12901 TCCTTCTAACGAAATATTTTCCATAAAATCGAAAGGATTTT 12941 ||||||| |||||||||||||| || || || ||||||| Sbjct 364783 CCCTTCTAGTGAAATATTTTCCATGAAGTCAAACGGATTTT 364823 Score = 84.2 bits (92), Expect = 2e-11 Identities = 78/99 (79%), Gaps = 0/99 (0%) Strand=Plus/Plus Query 13420 AATATAAGTATCTATCAATAAGCTATACATTTCTGAATGAATATTTTCCATCGCTATTTG 13479 ||| ||||| || || | | || |||||||| ||||| || |||||||| || ||||| Sbjct 367955 AATGTAAGTGTCAATGAGGAGACTGTACATTTCAGAATGTATGTTTTCCATGGCAATTTG 368014 Query 13480 GAAACCATAAAAACATCTAGCCTCTGATACCTGAACTTC 13518 ||| ||||| ||||| | ||||||| ||||||||||| Sbjct 368015 GAAGCCATAGAAACAGCGGGCCTCTGTAACCTGAACTTC 368053 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430675527467046