Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ellobius_20lutescens_20[genbank_20GCA_5F001685075.1_202016-07-14] 58,423 sequences; 2,353,188,398 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq4138 152 1e-31 seq3025 140 7e-28 seq3071 138 3e-27 seq2959 123 6e-23 seq22505 122 2e-22 seq5999 122 2e-22 seq4728 120 7e-22 seq650 116 9e-21 seq14192 114 3e-20 seq5338 113 1e-19 seq3050 105 2e-17 seq3609 93.3 1e-13 seq12379 86.0 1e-11 seq137 86.0 1e-11 >seq4138 Length=267950 Score = 152 bits (168), Expect = 1e-31 Identities = 330/491 (67%), Gaps = 6/491 (1%) Strand=Plus/Minus Query 269126 GGAGAAAGGTTAGTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCC 269185 |||||| | | || || ||||| ||||||||||| || ||||| || || |||||||| Sbjct 163029 GGAGAACGAGTTGTGGCCTTTGCTGCTGTAGAAGGGATCTTCTTCTCTGGCTCTTTTGCA 162970 Query 269186 GCTATCTTTTGGTTGAAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTG 269245 | || || ||| | |||||| | || || ||||| || | || || || ||||| | Sbjct 162969 TCAATATTCTGGCTCAAGAAACGGGGACTGATGCCTGGCCTTACATTTTCCAACGAGCTT 162910 Query 269246 ATAAGCAGGGACGAAGGTTTACACTGCGACTTCGCTTGTTTATTATTTACTAATTATCTT 269305 || ||||| || || ||||||| ||| | ||| || || | | || | | || Sbjct 162909 ATTAGCAGAGATGAGGGTTTACCCTGTGTCTTTGCCTGCCTGATGTTCAGGCAC---CTG 162853 Query 269306 TCACACAAACCTTCTCAAGATAGAGTATACGAAATTATAGATTCAGCTGTTTCTGTAGAA 269365 |||||| || || | |||||| | ||||| || | ||| || || || | Sbjct 162852 GTACACAAGCCGTCGGAGCCAAGAGTACAAGAAATCATCAGTGCAG-TGAGGCTAGAGCA 162794 Query 269366 ACAGAATTTCTAACGGAAGCTCTATCTATCGATCTTATCGGTATGAATAGCAAATCGATG 269425 || ||||| ||||| || || || | |||| ||||| ||||| ||| |||| Sbjct 162793 GGAG--TTTCTCACGGAGGCCCTGCCTGTGAATCTCATCGGGATGAACTGCACCCTGATG 162736 Query 269426 ATAGAATATATTAAGTTCGTATCTGATAGATTGCTGGTGTCTTTAGGGTTTAGTAAAAAA 269485 | | || || | ||||| | || || | || || ||||||| || || | Sbjct 162735 AAGCAGTACATCGAATTCGTGCCGGACAGGCTTATGCTGGAGCTAGGGTTCAGCAAGATT 162676 Query 269486 TATAACGTTGAAAATCCGTTTAGTTTTATGGAGAATATATCATTAGAAGGTAAGGCTAAT 269545 | || || |||||||||||| | ||||| ||||| ||||||||||| ||| | || Sbjct 162675 TTCAAAGTAGAAAATCCGTTTGACCTCATGGAAAATATTTCATTAGAAGGGAAGACAAAC 162616 Query 269546 TTCTTCGAGAAGCGGGTAAGTAACTATCAGAAAATGGGTGTAATGTCTACTAAAGAAGAA 269605 ||||| |||||||| || | | ||||||| |||| || ||||| | | || ||| Sbjct 162615 TTCTTTGAGAAGCGAGTGGGCGAGTATCAGAGGATGGAGGTGATGTCAAATTCAGCAGAG 162556 Query 269606 AATATTTTCAC 269616 ||| |||||| Sbjct 162555 AATTCTTTCAC 162545 >seq3025 Length=599017 Score = 140 bits (154), Expect = 7e-28 Identities = 175/240 (73%), Gaps = 0/240 (0%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || || || || | || || || || | || || |||||||| || || ||||| Sbjct 117906 ATCCCACCCCTGAGGCGCAGGACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCG 117965 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || || || | || || || || || || || ||||| || |||||||| || ||||| Sbjct 117966 GACAGGGTGCGGCCATCCTCCAGCTGCTTGCCTGCAAAGATCAGCCTCTGCTGGTCAGGG 118025 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || ||||| || ||||| ||||| || || || || || | ||| ||||| || || Sbjct 118026 GGGATGCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCGATGGTGTCGCTGGGCTCG 118085 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTTGTGTACA 104569 ||||| || || || ||||||||||| | ||||| || || ||||||||| | ||| || Sbjct 118086 ACCTCCAGGGTGATGGTCTTACCAGTTAAGGTTTTCACGAAGATCTGCATTGTCTGTCCA 118145 >seq3071 Length=285302 Score = 138 bits (152), Expect = 3e-27 Identities = 147/194 (76%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 104366 GATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCA 104425 || || || || || || |||||||| | ||| || ||||| || || || |||||| Sbjct 253187 GACTCCTTTTGGATGTTGTAGTCAGACAAAGTATGGCCATCTTCCAGCTGCTTGCCAGCA 253246 Query 104426 AAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACA 104485 || || ||| |||| ||||||||||| |||||||| |||||||| ||||| || || ||| Sbjct 253247 AAGATCAGCTTCTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGATCTTGGCCTTGACA 253306 Query 104486 TTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTT 104545 ||||||| || || ||||||||||| || || || || || || ||||| || || Sbjct 253307 TTTTCTATAGTGTCTGAGGGTTCTACCTCAAGCGTGATGGTTTTCCCCGTAAGGGTCTTC 253366 Query 104546 ACAAATATCTGCAT 104559 | || |||||||| Sbjct 253367 ATGAAAATCTGCAT 253380 >seq2959 Length=310600 Score = 123 bits (136), Expect = 6e-23 Identities = 148/201 (74%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || |||||||| || || || ||||| ||||| | || ||||| || || || ||| Sbjct 279647 GTGGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCA 279706 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 ||||| || || | ||| || || || || || || ||||||||||| ||||| || || Sbjct 279707 GCAAAGATGAGTCGCTGCTGGTCGGGGGGGATGCCCTCTTTATCCTGGATCTTGGCCTTC 279766 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 || || || | ||| || || || || ||||| || || || ||||| || || | || Sbjct 279767 ACGTTCTCGATGGTGTCACTGGGCTCGACCTCCAGGGTGATGGTCTTGCCCGTCAAGGTC 279826 Query 104543 TTTACAAATATCTGCATTTTG 104563 || || || || ||||||||| Sbjct 279827 TTCACGAAGATTTGCATTTTG 279847 >seq22505 Length=6242 Score = 122 bits (134), Expect = 2e-22 Identities = 157/217 (72%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 104347 AAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTC 104406 ||| || || || || || || |||||||| || || || || || || || | || || Sbjct 3195 AAGCACCAGGTGCAAAGTGGACTCTTTCTGGATGTTGTAATCGGACAGGGTCCGGCCATC 3254 Query 104407 TTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATC 104466 || || || || || ||||| || |||||||| || ||||| || || ||||| || || Sbjct 3255 CTCCAGCTGCTTGCCGGCAAATATCAGCCTCTGATGGTCAGGTGGGATGCCTTCCTTGTC 3314 Query 104467 CTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGT 104526 || ||||| || || | ||| | | |||||| || || | ||||| || || || || Sbjct 3315 TTGGATCTTGGCCTTGAAATTCTTGATGGTATCACTGGGCTAGACCTCAAGAGTGATGGT 3374 Query 104527 CTTACCAGTAAGTGTTTTTACAAATATCTGCATTTTG 104563 ||| || | || || || |||||||||||||| ||| Sbjct 3375 CTTGCCCATCAGGGTCTTCACAAATATCTGCATGTTG 3411 >seq5999 Length=119422 Score = 122 bits (134), Expect = 2e-22 Identities = 157/217 (72%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 104347 AAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTC 104406 ||| || || || || || || |||||||| || || || || || || || | || || Sbjct 3048 AAGCACCAGGTGCAAAGTGGACTCTTTCTGGATGTTGTAATCGGACAGGGTCCGGCCATC 2989 Query 104407 TTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATC 104466 || || || || || ||||| || |||||||| || ||||| || || ||||| || || Sbjct 2988 CTCCAGCTGCTTGCCGGCAAATATCAGCCTCTGATGGTCAGGTGGGATGCCTTCCTTGTC 2929 Query 104467 CTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGT 104526 || ||||| || || | ||| | | |||||| || || | ||||| || || || || Sbjct 2928 TTGGATCTTGGCCTTGAAATTCTTGATGGTATCACTGGGCTAGACCTCAAGAGTGATGGT 2869 Query 104527 CTTACCAGTAAGTGTTTTTACAAATATCTGCATTTTG 104563 ||| || | || || || |||||||||||||| ||| Sbjct 2868 CTTGCCCATCAGGGTCTTCACAAATATCTGCATGTTG 2832 >seq4728 Length=151395 Score = 120 bits (132), Expect = 7e-22 Identities = 147/197 (75%), Gaps = 3/197 (2%) Strand=Plus/Minus Query 104369 TCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAA 104428 ||||| | ||| || |||||| | | ||| | || ||||| |||||||| ||||||||| Sbjct 107912 TCTTT-TAAATGTTGTAGTCAAACAAAGTACAGCCATCTTCCAGTTGTTTACCAGCAAAA 107854 Query 104429 ATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTT 104488 || |||||||| ||||||||| | | || ||| |||||||| || || || ||||||||| Sbjct 107853 ATCAGCCTCTGCTGATCAGGAAGAAATCTTTCCTTATCCTGGATATTGGCCTTTACATTT 107794 Query 104489 TCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTT-ACCAGTAAGTGTTTTTA- 104546 |||| || | ||||| || || ||||| || | || || || || || || | Sbjct 107793 TCTATAGTGTTTGAGGGTTCAACTTCAAGTGTGATGTTTTTCCCCCGTCAGGGTCTTCAT 107734 Query 104547 CAAATATCTGCATTTTG 104563 ||| |||||||| ||| Sbjct 107733 AAAAAATCTGCATCTTG 107717 >seq650 Length=610773 Score = 116 bits (128), Expect = 9e-21 Identities = 155/216 (72%), Gaps = 7/216 (3%) Strand=Plus/Plus Query 104351 ACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCT 104410 || ||||| | || || || || || || | |||||||| | ||| | || ||||| Sbjct 359089 ACCAGATGAAGGGTGGACTCCTTTTGGATGCTGTAGTCAGACAAAGTACGGCCATCTTCC 359148 Query 104411 AGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGA 104470 || || || |||||||| || |||||||| ||||||||||| |||||||| |||||||| Sbjct 359149 AGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGAGGAATTCCTTCCTTATCCTGG 359208 Query 104471 ATCTTTGCTTTTACATTTTCTACG-------GTATCGCTAGGTTCTACCTCTAGTGTAAT 104523 ||||| || || ||||||| | | || || ||||| |||| || | || Sbjct 359209 ATCTTGGCCTTGACATTTTTTCTGTCATTTAGTGTCCGAGGGTTCAACCTTGAGCATGAT 359268 Query 104524 AGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || || || ||||| || || || || |||||||| Sbjct 359269 GGTTTTCCCCGTAAGGGTCTTCACGAAAATCTGCAT 359304 >seq14192 Length=18816 Score = 114 bits (126), Expect = 3e-20 Identities = 155/214 (72%), Gaps = 3/214 (1%) Strand=Plus/Plus Query 104348 AGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCT 104407 || || || || || || || |||||||| || || |||||||| || || | | ||| Sbjct 10469 AGAACCAGGTGCAAGGTGGACTCTTTCTGGATCTTGTAGTCAGACAGGGTGCAGACATCT 10528 Query 104408 TCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGT--ATTCCTTCTTTAT 104465 || | || || |||||||| ||| |||||| || ||||| || || || | ||| | Sbjct 10529 TCCAACTGCTTGCCAGCAAAGATTT-CCTCTGCTGGTCAGGGGGGGAATGCCCTTTTTGT 10587 Query 104466 CCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAG 104525 | ||||||||||| || || || || | | | || || ||||| ||||| || ||||| | Sbjct 10588 CATGAATCTTTGCCTTGACCTTCTCAATGATGTCTCTGGGTTCAACCTCCAGGGTAATGG 10647 Query 104526 TCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 |||| || || || || | | ||| |||||||| Sbjct 10648 TCTTGCCTGTCAGGGTCTGCATAAAGATCTGCAT 10681 >seq5338 Length=92157 Score = 113 bits (124), Expect = 1e-19 Identities = 146/202 (72%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || |||||||| || || || ||||| ||||| | || ||||| || || || ||| Sbjct 52173 GTGGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCA 52232 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 ||||| || || | ||| || || || || || || ||||||||||| ||||| || || Sbjct 52233 GCAAAGATGAGTCGCTGCTGGTCGGGGGGGATGCCCTCTTTATCCTGGATCTTGGCCTTC 52292 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 || || || | ||| || || || | ||||| || || || || || | || || || Sbjct 52293 ACGTTCTCGATGGTGTCACTCGGCGCCACCTCCAGGGTGATGGTTTTGCTGGTCAGGGTC 52352 Query 104543 TTTACAAATATCTGCATTTTGT 104564 || | || || |||||||||| Sbjct 52353 TTCATGAAGATTTGCATTTTGT 52374 >seq3050 Length=242780 Score = 105 bits (116), Expect = 2e-17 Identities = 129/171 (75%), Gaps = 4/171 (2%) Strand=Plus/Minus Query 104369 TCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAA 104428 || || ||||| || |||||||| | ||| || ||||| || ||||| |||||| || Sbjct 220468 TCCTTTTGAATGTTCTAGTCAGACAAAGTATGGCCATCTTCCAGCTGTTTACCAGCATAA 220409 Query 104429 ATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTT 104488 | | ||||||| ||||||| || ||||| || ||||||||| |||| || ||||||||| Sbjct 220408 -TCAACCTCTGTGGATCAGGGGGAATTCCCTCCTTATCCTGAGTCTTGGCCTTTACATTT 220350 Query 104489 TCTACGGTATCGCTA-GGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAG 104538 |||| || | || | ||||| ||| ||| || ||||| || ||||| Sbjct 220349 TCTATAGTGT-GCGAGGGTTCAGCCTGGAGT-ACATGGTCTTCCCTGTAAG 220301 >seq3609 Length=131252 Score = 93.3 bits (102), Expect = 1e-13 Identities = 114/156 (73%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 104406 CTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTAT 104465 ||||| || || || ||||| ||| || ||||||| ||| | ||||| || ||||||| Sbjct 106624 CTTCTGACTGCTTGCCTGCAAAGATTTGCTTCTGTTGGTCAAGGGGTATGCCCTCTTTAT 106683 Query 104466 CCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAG 104525 |||||||||| | || ||||| || | ||| | || | || || ||||| ||||| | Sbjct 106684 CCTGAATCTTGACCTTCACATTCTCAATGGTGTTACTGGACTCCACTTCTAGGGTAATGG 106743 Query 104526 TCTTACCAGTAAGTGTTTTTACAAATATCTGCATTT 104561 |||| || | || || ||||| || ||||||| Sbjct 106744 TCTTGTGGGTCTGGGTCTTCACAAAGATTTGCATTT 106779 >seq12379 Length=26009 Score = 86.0 bits (94), Expect = 1e-11 Identities = 154/224 (69%), Gaps = 1/224 (0%) Strand=Plus/Minus Query 104342 AGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTA 104401 ||||| | ||| | ||| | || || || || ||||| || ||| ||| | || | Sbjct 21934 AGCCTCAATACAAAATGAAGGGTGGACTCCTTTTGAATGTTGTAGGCAGGCAAAGGACGG 21875 Query 104402 CCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCT 104461 |||||||| || || | |||||||| || ||||||| ||||||||||| ||||||| Sbjct 21874 CCGTCTTCCAGCTGCTCACCAGCAAAGATCAGCCTCTACTGATCAGGAGGAATTCCTTTC 21815 Query 104462 TTATCCTGAATCTTTGCTTTTACA-TTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGT 104520 | || | ||||| |||||| ||||||| || || | ||| |||||| Sbjct 21814 CTCTCGGGGATCTTGATCTTTACATTTTTCTATAGTGTCTAAGGATTCAGTCTCTAGCCA 21755 Query 104521 AATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTTGT 104564 || |||| || ||||| || | | || |||||||| |||| Sbjct 21754 GATGCTCTTCCCTGTAAGGGTCTCCATGAAAATCTGCATCTTGT 21711 >seq137 Length=869495 Score = 86.0 bits (94), Expect = 1e-11 Identities = 106/145 (73%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 269489 AACGTTGAAAATCCGTTTAGTTTTATGGAGAATATATCATTAGAAGGTAAGGCTAATTTC 269548 || || |||||||||||| || ||||| ||||| ||| ||||||| ||| | || ||| Sbjct 364830 AAAGTAGAAAATCCGTTTGACTTCATGGAAAATATTTCACTAGAAGGGAAGACAAACTTC 364771 Query 269549 TTCGAGAAGCGGGTAAGTAACTATCAGAAAATGGGTGTAATGTCTACTAAAGAAGAAAAT 269608 || |||||||| || | | ||||||| ||||| || ||||| | | | ||| ||| Sbjct 364770 TTTGAGAAGCGAGTGGGCGAGTATCAGAGGATGGGGGTGATGTCAAATTCAACAGAGAAT 364711 Query 269609 ATTTTCACTACAGATGCAGAATTCT 269633 |||||| ||||| || |||| Sbjct 364710 TCTTTCACCTTGGATGCTGACTTCT 364686 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1150536526844484