Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ellobius_20lutescens_20[genbank_20GCA_5F001685075.1_202016-07-14] 58,423 sequences; 2,353,188,398 total letters Query= NC_005336.1 Length=139962 Score E Sequences producing significant alignments: (Bits) Value seq686 105 6e-18 seq4729 96.9 3e-15 >seq686 Length=494244 Score = 105 bits (116), Expect = 6e-18 Identities = 136/185 (74%), Gaps = 2/185 (1%) Strand=Plus/Plus Query 5315 ATGCGTTCGCATATTAGCTGAGCTATCCTGTCTCCCTTCTTAACCTCAAAGT-CGCTGTT 5373 || ||||| || || ||||| || |||| || || || || || ||||| | | || || Sbjct 395369 ATTCGTTCACAGATGAGCTGTGCAATCCGATCACCTTTTTTTACTTCAAACTTCTCT-TT 395427 Query 5374 TCCGAAGTTAAACAGCACCACCCCGACATTGCCTCGGTAGTCTTCGTCGATAACGCCAGC 5433 ||| |||||||||||||| || || ||||| |||| || |||| ||| || || || || Sbjct 395428 TCCAAAGTTAAACAGCACAACACCAACATTTCCTCTATAATCTTTGTCTATGACACCGGC 395487 Query 5434 GCCCACGTCGATAAAGTGTTTGACCGCAAGGCCGGAACGTGGTGCTATGCGTCCGTAGCA 5493 || || || || ||||| || || || | ||| || | | | |||| | ||||||||| Sbjct 395488 TCCTACATCTATGAAGTGCTTTACTGCCAAGCCAGACCATAGAGCTACTCTTCCGTAGCA 395547 Query 5494 ACCAG 5498 |||| Sbjct 395548 CCCAG 395552 >seq4729 Length=178566 Score = 96.9 bits (106), Expect = 3e-15 Identities = 100/131 (76%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 128874 GGCTACCTCGGGTGCCAGGCACTCTCTGAGATGATACAGTTTTACTTGGAAGAGGTGATG 128933 || ||| | || ||||| | | || || ||||| ||||||||| ||| |||||||||| Sbjct 55100 GGTTACTTGGGTTGCCAAACCTTGTCAGAAATGATCCAGTTTTACCTGGTAGAGGTGATG 55041 Query 128934 CCGCAGGCGGAAAATCACGGGCCGGACATCAAAGAGCACGTTAACTCGCTGGGAGAAAAG 128993 || ||||| || || || || || || ||||| ||||| | ||||| |||||||| ||| Sbjct 55040 CCCCAGGCAGAGAACCATGGCCCAGAAATCAAGGAGCATTTGAACTCCCTGGGAGAGAAG 54981 Query 128994 CTCAAAACGCT 129004 || || || || Sbjct 54980 CTGAAGACCCT 54970 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 447423413479760